data_5LAK # _model_server_result.job_id U1wcntlVFyWfTybuyE-OJg _model_server_result.datetime_utc '2025-03-06 08:02:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 5LAK # _exptl.entry_id 5LAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.9 _cell.angle_gamma 90 _cell.entry_id 5LAK _cell.length_a 72.192 _cell.length_b 110.15 _cell.length_c 98.496 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,I,M,N 1 1 C,D,F,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 153 A CYS 153 1_555 E C ECC 5 I ECC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? covale ? covale2 B SG CYS 153 B CYS 153 1_555 G C ECC 5 K ECC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? covale ? covale3 C SG CYS 153 C CYS 153 1_555 F C ECC 5 J ECC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? covale ? covale4 E C BEZ 1 I BEZ 1 1_555 E N TYR 2 I TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.532 ? covale ? covale5 E C ASN 4 I ASN 4 1_555 E N ECC 5 I ECC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 F C BEZ 1 J BEZ 1 1_555 F N TYR 2 J TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? covale ? covale7 F C ASN 4 J ASN 4 1_555 F N ECC 5 J ECC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 G C BEZ 1 K BEZ 1 1_555 G N TYR 2 K TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.535 ? covale ? covale9 G C ASN 4 K ASN 4 1_555 G N ECC 5 K ECC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5LAK _atom_sites.fract_transf_matrix[1][1] 0.013852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003946 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 1PE A 1 401 1 1PE PEG . I 4 PGE B 1 401 3 PGE PGE . J 4 PGE C 1 401 4 PGE PGE . K 3 1PE C 1 402 3 1PE PEG . L 3 1PE D 1 401 2 1PE PEG . M 5 HOH A 1 501 29 HOH HOH . M 5 HOH A 2 502 140 HOH HOH . M 5 HOH A 3 503 137 HOH HOH . M 5 HOH A 4 504 148 HOH HOH . M 5 HOH A 5 505 22 HOH HOH . M 5 HOH A 6 506 51 HOH HOH . M 5 HOH A 7 507 62 HOH HOH . M 5 HOH A 8 508 23 HOH HOH . M 5 HOH A 9 509 30 HOH HOH . M 5 HOH A 10 510 74 HOH HOH . M 5 HOH A 11 511 146 HOH HOH . M 5 HOH A 12 512 63 HOH HOH . M 5 HOH A 13 513 125 HOH HOH . M 5 HOH A 14 514 134 HOH HOH . M 5 HOH A 15 515 82 HOH HOH . M 5 HOH A 16 516 116 HOH HOH . M 5 HOH A 17 517 119 HOH HOH . M 5 HOH A 18 518 178 HOH HOH . M 5 HOH A 19 519 176 HOH HOH . M 5 HOH A 20 520 106 HOH HOH . M 5 HOH A 21 521 60 HOH HOH . M 5 HOH A 22 522 59 HOH HOH . M 5 HOH A 23 523 151 HOH HOH . M 5 HOH A 24 524 54 HOH HOH . M 5 HOH A 25 525 65 HOH HOH . M 5 HOH A 26 526 117 HOH HOH . M 5 HOH A 27 527 38 HOH HOH . M 5 HOH A 28 528 11 HOH HOH . M 5 HOH A 29 529 123 HOH HOH . M 5 HOH A 30 530 108 HOH HOH . M 5 HOH A 31 531 26 HOH HOH . M 5 HOH A 32 532 139 HOH HOH . M 5 HOH A 33 533 91 HOH HOH . M 5 HOH A 34 534 20 HOH HOH . M 5 HOH A 35 535 3 HOH HOH . M 5 HOH A 36 536 9 HOH HOH . M 5 HOH A 37 537 104 HOH HOH . M 5 HOH A 38 538 110 HOH HOH . M 5 HOH A 39 539 37 HOH HOH . M 5 HOH A 40 540 45 HOH HOH . M 5 HOH A 41 541 46 HOH HOH . M 5 HOH A 42 542 133 HOH HOH . M 5 HOH A 43 543 67 HOH HOH . M 5 HOH A 44 544 34 HOH HOH . M 5 HOH A 45 545 1 HOH HOH . M 5 HOH A 46 546 97 HOH HOH . M 5 HOH A 47 547 98 HOH HOH . M 5 HOH A 48 548 87 HOH HOH . M 5 HOH A 49 549 158 HOH HOH . M 5 HOH A 50 550 24 HOH HOH . M 5 HOH A 51 551 53 HOH HOH . M 5 HOH A 52 552 88 HOH HOH . M 5 HOH A 53 553 114 HOH HOH . M 5 HOH A 54 554 161 HOH HOH . M 5 HOH A 55 555 115 HOH HOH . M 5 HOH A 56 556 86 HOH HOH . M 5 HOH A 57 557 132 HOH HOH . M 5 HOH A 58 558 147 HOH HOH . M 5 HOH A 59 559 79 HOH HOH . M 5 HOH A 60 560 138 HOH HOH . M 5 HOH A 61 561 174 HOH HOH . M 5 HOH A 62 562 64 HOH HOH . M 5 HOH A 63 563 41 HOH HOH . M 5 HOH A 64 564 95 HOH HOH . M 5 HOH A 65 565 81 HOH HOH . M 5 HOH A 66 566 149 HOH HOH . M 5 HOH A 67 567 164 HOH HOH . N 5 HOH B 1 501 55 HOH HOH . N 5 HOH B 2 502 163 HOH HOH . N 5 HOH B 3 503 166 HOH HOH . N 5 HOH B 4 504 131 HOH HOH . N 5 HOH B 5 505 48 HOH HOH . N 5 HOH B 6 506 52 HOH HOH . N 5 HOH B 7 507 71 HOH HOH . N 5 HOH B 8 508 96 HOH HOH . N 5 HOH B 9 509 159 HOH HOH . N 5 HOH B 10 510 25 HOH HOH . N 5 HOH B 11 511 111 HOH HOH . N 5 HOH B 12 512 27 HOH HOH . N 5 HOH B 13 513 33 HOH HOH . N 5 HOH B 14 514 141 HOH HOH . N 5 HOH B 15 515 5 HOH HOH . N 5 HOH B 16 516 4 HOH HOH . N 5 HOH B 17 517 14 HOH HOH . N 5 HOH B 18 518 15 HOH HOH . N 5 HOH B 19 519 68 HOH HOH . N 5 HOH B 20 520 93 HOH HOH . N 5 HOH B 21 521 171 HOH HOH . N 5 HOH B 22 522 49 HOH HOH . N 5 HOH B 23 523 160 HOH HOH . N 5 HOH B 24 524 35 HOH HOH . N 5 HOH B 25 525 152 HOH HOH . N 5 HOH B 26 526 31 HOH HOH . N 5 HOH B 27 527 89 HOH HOH . N 5 HOH B 28 528 107 HOH HOH . N 5 HOH B 29 529 61 HOH HOH . N 5 HOH B 30 530 21 HOH HOH . N 5 HOH B 31 531 128 HOH HOH . N 5 HOH B 32 532 122 HOH HOH . O 5 HOH C 1 501 135 HOH HOH . O 5 HOH C 2 502 40 HOH HOH . O 5 HOH C 3 503 157 HOH HOH . O 5 HOH C 4 504 17 HOH HOH . O 5 HOH C 5 505 77 HOH HOH . O 5 HOH C 6 506 76 HOH HOH . O 5 HOH C 7 507 136 HOH HOH . O 5 HOH C 8 508 150 HOH HOH . O 5 HOH C 9 509 153 HOH HOH . O 5 HOH C 10 510 175 HOH HOH . O 5 HOH C 11 511 177 HOH HOH . O 5 HOH C 12 512 18 HOH HOH . O 5 HOH C 13 513 84 HOH HOH . O 5 HOH C 14 514 142 HOH HOH . O 5 HOH C 15 515 16 HOH HOH . O 5 HOH C 16 516 172 HOH HOH . O 5 HOH C 17 517 102 HOH HOH . O 5 HOH C 18 518 80 HOH HOH . O 5 HOH C 19 519 155 HOH HOH . O 5 HOH C 20 520 58 HOH HOH . O 5 HOH C 21 521 100 HOH HOH . O 5 HOH C 22 522 78 HOH HOH . O 5 HOH C 23 523 103 HOH HOH . O 5 HOH C 24 524 101 HOH HOH . O 5 HOH C 25 525 12 HOH HOH . O 5 HOH C 26 526 50 HOH HOH . O 5 HOH C 27 527 19 HOH HOH . O 5 HOH C 28 528 69 HOH HOH . O 5 HOH C 29 529 168 HOH HOH . O 5 HOH C 30 530 179 HOH HOH . O 5 HOH C 31 531 143 HOH HOH . O 5 HOH C 32 532 39 HOH HOH . O 5 HOH C 33 533 118 HOH HOH . O 5 HOH C 34 534 36 HOH HOH . O 5 HOH C 35 535 154 HOH HOH . O 5 HOH C 36 536 32 HOH HOH . O 5 HOH C 37 537 92 HOH HOH . O 5 HOH C 38 538 121 HOH HOH . O 5 HOH C 39 539 169 HOH HOH . O 5 HOH C 40 540 42 HOH HOH . O 5 HOH C 41 541 127 HOH HOH . O 5 HOH C 42 542 99 HOH HOH . O 5 HOH C 43 543 94 HOH HOH . O 5 HOH C 44 544 47 HOH HOH . O 5 HOH C 45 545 43 HOH HOH . O 5 HOH C 46 546 75 HOH HOH . O 5 HOH C 47 547 85 HOH HOH . O 5 HOH C 48 548 126 HOH HOH . P 5 HOH D 1 501 144 HOH HOH . P 5 HOH D 2 502 120 HOH HOH . P 5 HOH D 3 503 170 HOH HOH . P 5 HOH D 4 504 44 HOH HOH . P 5 HOH D 5 505 73 HOH HOH . P 5 HOH D 6 506 57 HOH HOH . P 5 HOH D 7 507 145 HOH HOH . P 5 HOH D 8 508 7 HOH HOH . P 5 HOH D 9 509 8 HOH HOH . P 5 HOH D 10 510 28 HOH HOH . P 5 HOH D 11 511 10 HOH HOH . P 5 HOH D 12 512 109 HOH HOH . P 5 HOH D 13 513 173 HOH HOH . P 5 HOH D 14 514 167 HOH HOH . P 5 HOH D 15 515 13 HOH HOH . P 5 HOH D 16 516 2 HOH HOH . P 5 HOH D 17 517 66 HOH HOH . P 5 HOH D 18 518 6 HOH HOH . P 5 HOH D 19 519 112 HOH HOH . P 5 HOH D 20 520 90 HOH HOH . P 5 HOH D 21 521 70 HOH HOH . P 5 HOH D 22 522 72 HOH HOH . P 5 HOH D 23 523 124 HOH HOH . P 5 HOH D 24 524 83 HOH HOH . P 5 HOH D 25 525 129 HOH HOH . P 5 HOH D 26 526 165 HOH HOH . P 5 HOH D 27 527 156 HOH HOH . P 5 HOH D 28 528 56 HOH HOH . P 5 HOH D 29 529 113 HOH HOH . P 5 HOH D 30 530 105 HOH HOH . P 5 HOH D 31 531 130 HOH HOH . P 5 HOH D 32 532 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . H 3 16.307 22.601 26.507 1 54.65 ? OH2 1PE 401 A 1 HETATM 2 C C12 1PE . . . H 3 15.389 21.798 25.78 1 57.29 ? C12 1PE 401 A 1 HETATM 3 C C22 1PE . . . H 3 14.241 22.602 25.245 1 60.39 ? C22 1PE 401 A 1 HETATM 4 O OH3 1PE . . . H 3 14.717 23.573 24.321 1 60.02 ? OH3 1PE 401 A 1 HETATM 5 C C13 1PE . . . H 3 13.947 25.323 22.877 1 46.04 ? C13 1PE 401 A 1 HETATM 6 C C23 1PE . . . H 3 13.756 23.911 23.329 1 52.72 ? C23 1PE 401 A 1 HETATM 7 O OH4 1PE . . . H 3 13.717 26.224 23.951 1 42.24 ? OH4 1PE 401 A 1 HETATM 8 C C14 1PE . . . H 3 14.351 28.278 25.003 1 33.19 ? C14 1PE 401 A 1 HETATM 9 C C24 1PE . . . H 3 14.252 27.519 23.718 1 38.65 ? C24 1PE 401 A 1 HETATM 10 O OH5 1PE . . . H 3 13.06 28.475 25.563 1 34 ? OH5 1PE 401 A 1 HETATM 11 C C15 1PE . . . H 3 11.69 29.494 27.21 1 35.5 ? C15 1PE 401 A 1 HETATM 12 C C25 1PE . . . H 3 13.086 29.119 26.831 1 28.02 ? C25 1PE 401 A 1 HETATM 13 O OH6 1PE . . . H 3 11.107 30.223 26.139 1 35.68 ? OH6 1PE 401 A 1 HETATM 14 C C16 1PE . . . H 3 9.603 31.917 25.417 1 29.65 ? C16 1PE 401 A 1 HETATM 15 C C26 1PE . . . H 3 9.893 30.883 26.468 1 32 ? C26 1PE 401 A 1 HETATM 16 O OH7 1PE . . . H 3 8.266 32.389 25.483 1 23.5 ? OH7 1PE 401 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #