data_5LAS # _model_server_result.job_id lU1ag3rvOvWHO2-bpLrG8w _model_server_result.datetime_utc '2024-11-13 20:18:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5las # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5LAS # _exptl.entry_id 5LAS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.25 _cell.angle_gamma 90 _cell.entry_id 5LAS _cell.length_a 43.579 _cell.length_b 73.642 _cell.length_c 70.146 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 A CYS 281 1_555 C SG CYS 18 C CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 143 A CYS 317 1_555 C SG CYS 3 C CYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 107 B CYS 281 1_555 D SG CYS 18 D CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 143 B CYS 317 1_555 D SG CYS 3 D CYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc4 E MN MN . A MN 501 1_555 F O2 OGA . A OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc5 E MN MN . A MN 501 1_555 F O2' OGA . A OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc6 E MN MN . A MN 501 1_555 I O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc7 B NE2 HIS 139 B HIS 313 1_555 G MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc8 B OD1 ASP 141 B ASP 315 1_555 G MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc9 B NE2 HIS 200 B HIS 374 1_555 G MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc10 G MN MN . B MN 501 1_555 H O2' OGA . B OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc11 G MN MN . B MN 501 1_555 H O1 OGA . B OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc12 G MN MN . B MN 501 1_555 J O HOH . B HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LAS _atom_sites.fract_transf_matrix[1][1] 0.022947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000502 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MN A 1 501 501 MN MN . F 4 OGA A 1 502 600 OGA OGA . G 3 MN B 1 501 501 MN MN . H 4 OGA B 1 502 600 OGA OGA . I 5 HOH A 1 601 1155 HOH HOH . I 5 HOH A 2 602 1187 HOH HOH . I 5 HOH A 3 603 1015 HOH HOH . I 5 HOH A 4 604 1113 HOH HOH . I 5 HOH A 5 605 1174 HOH HOH . I 5 HOH A 6 606 1071 HOH HOH . I 5 HOH A 7 607 1037 HOH HOH . I 5 HOH A 8 608 1050 HOH HOH . I 5 HOH A 9 609 1075 HOH HOH . I 5 HOH A 10 610 1078 HOH HOH . I 5 HOH A 11 611 1144 HOH HOH . I 5 HOH A 12 612 1031 HOH HOH . I 5 HOH A 13 613 1205 HOH HOH . I 5 HOH A 14 614 1021 HOH HOH . I 5 HOH A 15 615 1176 HOH HOH . I 5 HOH A 16 616 1059 HOH HOH . I 5 HOH A 17 617 1033 HOH HOH . I 5 HOH A 18 618 1076 HOH HOH . I 5 HOH A 19 619 1051 HOH HOH . I 5 HOH A 20 620 1039 HOH HOH . I 5 HOH A 21 621 1110 HOH HOH . I 5 HOH A 22 622 1040 HOH HOH . I 5 HOH A 23 623 1030 HOH HOH . I 5 HOH A 24 624 1057 HOH HOH . I 5 HOH A 25 625 1026 HOH HOH . I 5 HOH A 26 626 1154 HOH HOH . I 5 HOH A 27 627 1054 HOH HOH . I 5 HOH A 28 628 1134 HOH HOH . I 5 HOH A 29 629 1203 HOH HOH . I 5 HOH A 30 630 1083 HOH HOH . I 5 HOH A 31 631 1063 HOH HOH . I 5 HOH A 32 632 1173 HOH HOH . I 5 HOH A 33 633 1077 HOH HOH . I 5 HOH A 34 634 1029 HOH HOH . I 5 HOH A 35 635 1119 HOH HOH . I 5 HOH A 36 636 1032 HOH HOH . I 5 HOH A 37 637 1020 HOH HOH . I 5 HOH A 38 638 1153 HOH HOH . I 5 HOH A 39 639 1079 HOH HOH . I 5 HOH A 40 640 1121 HOH HOH . I 5 HOH A 41 641 1172 HOH HOH . I 5 HOH A 42 642 1131 HOH HOH . I 5 HOH A 43 643 1118 HOH HOH . I 5 HOH A 44 644 1081 HOH HOH . I 5 HOH A 45 645 1073 HOH HOH . I 5 HOH A 46 646 1016 HOH HOH . I 5 HOH A 47 647 1188 HOH HOH . I 5 HOH A 48 648 1022 HOH HOH . I 5 HOH A 49 649 1117 HOH HOH . I 5 HOH A 50 650 1103 HOH HOH . I 5 HOH A 51 651 1087 HOH HOH . I 5 HOH A 52 652 1028 HOH HOH . I 5 HOH A 53 653 1068 HOH HOH . I 5 HOH A 54 654 1056 HOH HOH . I 5 HOH A 55 655 1062 HOH HOH . I 5 HOH A 56 656 1209 HOH HOH . I 5 HOH A 57 657 1141 HOH HOH . I 5 HOH A 58 658 1058 HOH HOH . I 5 HOH A 59 659 1123 HOH HOH . I 5 HOH A 60 660 1126 HOH HOH . I 5 HOH A 61 661 1161 HOH HOH . I 5 HOH A 62 662 1060 HOH HOH . I 5 HOH A 63 663 1125 HOH HOH . I 5 HOH A 64 664 1018 HOH HOH . I 5 HOH A 65 665 1024 HOH HOH . I 5 HOH A 66 666 1175 HOH HOH . I 5 HOH A 67 667 1086 HOH HOH . I 5 HOH A 68 668 1043 HOH HOH . I 5 HOH A 69 669 1127 HOH HOH . I 5 HOH A 70 670 1148 HOH HOH . I 5 HOH A 71 671 1146 HOH HOH . I 5 HOH A 72 672 1124 HOH HOH . I 5 HOH A 73 673 1093 HOH HOH . I 5 HOH A 74 674 1023 HOH HOH . I 5 HOH A 75 675 1179 HOH HOH . I 5 HOH A 76 676 1049 HOH HOH . I 5 HOH A 77 677 1112 HOH HOH . I 5 HOH A 78 678 1090 HOH HOH . I 5 HOH A 79 679 1147 HOH HOH . I 5 HOH A 80 680 1092 HOH HOH . I 5 HOH A 81 681 1150 HOH HOH . I 5 HOH A 82 682 1044 HOH HOH . I 5 HOH A 83 683 1067 HOH HOH . I 5 HOH A 84 684 1159 HOH HOH . I 5 HOH A 85 685 1200 HOH HOH . I 5 HOH A 86 686 1111 HOH HOH . I 5 HOH A 87 687 1129 HOH HOH . I 5 HOH A 88 688 1152 HOH HOH . I 5 HOH A 89 689 1171 HOH HOH . I 5 HOH A 90 690 1170 HOH HOH . I 5 HOH A 91 691 1177 HOH HOH . I 5 HOH A 92 692 1201 HOH HOH . I 5 HOH A 93 693 1047 HOH HOH . I 5 HOH A 94 694 1132 HOH HOH . I 5 HOH A 95 695 1091 HOH HOH . I 5 HOH A 96 696 1128 HOH HOH . I 5 HOH A 97 697 1066 HOH HOH . I 5 HOH A 98 698 1089 HOH HOH . I 5 HOH A 99 699 1164 HOH HOH . I 5 HOH A 100 700 1202 HOH HOH . J 5 HOH B 1 601 1097 HOH HOH . J 5 HOH B 2 602 1105 HOH HOH . J 5 HOH B 3 603 1088 HOH HOH . J 5 HOH B 4 604 1160 HOH HOH . J 5 HOH B 5 605 1138 HOH HOH . J 5 HOH B 6 606 1048 HOH HOH . J 5 HOH B 7 607 1184 HOH HOH . J 5 HOH B 8 608 1149 HOH HOH . J 5 HOH B 9 609 1180 HOH HOH . J 5 HOH B 10 610 1120 HOH HOH . J 5 HOH B 11 611 1191 HOH HOH . J 5 HOH B 12 612 1098 HOH HOH . J 5 HOH B 13 613 1002 HOH HOH . J 5 HOH B 14 614 1009 HOH HOH . J 5 HOH B 15 615 1034 HOH HOH . J 5 HOH B 16 616 1096 HOH HOH . J 5 HOH B 17 617 1095 HOH HOH . J 5 HOH B 18 618 1001 HOH HOH . J 5 HOH B 19 619 1004 HOH HOH . J 5 HOH B 20 620 1003 HOH HOH . J 5 HOH B 21 621 1181 HOH HOH . J 5 HOH B 22 622 1084 HOH HOH . J 5 HOH B 23 623 1104 HOH HOH . J 5 HOH B 24 624 1182 HOH HOH . J 5 HOH B 25 625 1085 HOH HOH . J 5 HOH B 26 626 1013 HOH HOH . J 5 HOH B 27 627 1011 HOH HOH . J 5 HOH B 28 628 1027 HOH HOH . J 5 HOH B 29 629 1045 HOH HOH . J 5 HOH B 30 630 1072 HOH HOH . J 5 HOH B 31 631 1094 HOH HOH . J 5 HOH B 32 632 1167 HOH HOH . J 5 HOH B 33 633 1183 HOH HOH . J 5 HOH B 34 634 1069 HOH HOH . J 5 HOH B 35 635 1115 HOH HOH . J 5 HOH B 36 636 1019 HOH HOH . J 5 HOH B 37 637 1100 HOH HOH . J 5 HOH B 38 638 1042 HOH HOH . J 5 HOH B 39 639 1005 HOH HOH . J 5 HOH B 40 640 1168 HOH HOH . J 5 HOH B 41 641 1106 HOH HOH . J 5 HOH B 42 642 1109 HOH HOH . J 5 HOH B 43 643 1114 HOH HOH . J 5 HOH B 44 644 1082 HOH HOH . J 5 HOH B 45 645 1158 HOH HOH . J 5 HOH B 46 646 1165 HOH HOH . J 5 HOH B 47 647 1025 HOH HOH . J 5 HOH B 48 648 1007 HOH HOH . J 5 HOH B 49 649 1035 HOH HOH . J 5 HOH B 50 650 1108 HOH HOH . J 5 HOH B 51 651 1038 HOH HOH . J 5 HOH B 52 652 1197 HOH HOH . J 5 HOH B 53 653 1046 HOH HOH . J 5 HOH B 54 654 1190 HOH HOH . J 5 HOH B 55 655 1107 HOH HOH . J 5 HOH B 56 656 1194 HOH HOH . J 5 HOH B 57 657 1189 HOH HOH . J 5 HOH B 58 658 1006 HOH HOH . J 5 HOH B 59 659 1145 HOH HOH . J 5 HOH B 60 660 1010 HOH HOH . J 5 HOH B 61 661 1133 HOH HOH . J 5 HOH B 62 662 1137 HOH HOH . J 5 HOH B 63 663 1195 HOH HOH . J 5 HOH B 64 664 1162 HOH HOH . J 5 HOH B 65 665 1166 HOH HOH . J 5 HOH B 66 666 1080 HOH HOH . J 5 HOH B 67 667 1185 HOH HOH . J 5 HOH B 68 668 1198 HOH HOH . J 5 HOH B 69 669 1207 HOH HOH . J 5 HOH B 70 670 1122 HOH HOH . J 5 HOH B 71 671 1169 HOH HOH . J 5 HOH B 72 672 1061 HOH HOH . J 5 HOH B 73 673 1142 HOH HOH . J 5 HOH B 74 674 1151 HOH HOH . J 5 HOH B 75 675 1157 HOH HOH . J 5 HOH B 76 676 1206 HOH HOH . J 5 HOH B 77 677 1099 HOH HOH . J 5 HOH B 78 678 1192 HOH HOH . J 5 HOH B 79 679 1193 HOH HOH . K 5 HOH C 1 501 1036 HOH HOH . K 5 HOH C 2 502 1130 HOH HOH . K 5 HOH C 3 503 1064 HOH HOH . K 5 HOH C 4 504 1116 HOH HOH . K 5 HOH C 5 505 1053 HOH HOH . K 5 HOH C 6 506 1052 HOH HOH . K 5 HOH C 7 507 1017 HOH HOH . K 5 HOH C 8 508 1070 HOH HOH . K 5 HOH C 9 509 1102 HOH HOH . K 5 HOH C 10 510 1178 HOH HOH . K 5 HOH C 11 511 1204 HOH HOH . K 5 HOH C 12 512 1143 HOH HOH . K 5 HOH C 13 513 1139 HOH HOH . L 5 HOH D 1 501 1008 HOH HOH . L 5 HOH D 2 502 1012 HOH HOH . L 5 HOH D 3 503 1065 HOH HOH . L 5 HOH D 4 504 1196 HOH HOH . L 5 HOH D 5 505 1041 HOH HOH . L 5 HOH D 6 506 1163 HOH HOH . L 5 HOH D 7 507 1074 HOH HOH . L 5 HOH D 8 508 1135 HOH HOH . L 5 HOH D 9 509 1055 HOH HOH . L 5 HOH D 10 510 1199 HOH HOH . L 5 HOH D 11 511 1101 HOH HOH . L 5 HOH D 12 512 1014 HOH HOH . L 5 HOH D 13 513 1208 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.944 _atom_site.Cartn_y 15.563 _atom_site.Cartn_z 38.681 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #