data_5LAV
#
_model_server_result.job_id            xMNRWHV2i46SBwaGS0t82g 
_model_server_result.datetime_utc      '2024-11-24 00:12:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lav 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5LAV 
#
_exptl.entry_id    5LAV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              418.359 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(3~{S},3'~{S},4'~{S})-4'-azanyl-6-chloranyl-3'-(3-chlorophenyl)-1'-(2,2-dimethylpropyl)spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5LAV 
_cell.length_a            56.651 
_cell.length_b            56.651 
_cell.length_c            104.085 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LAV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H25 Cl2 N3 O' 
_chem_comp.formula_weight    418.359 
_chem_comp.id                6SK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(3~{S},3'~{S},4'~{S})-4'-azanyl-6-chloranyl-3'-(3-chlorophenyl)-1'-(2,2-dimethylpropyl)spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL1 C2 6SK sing 1 n n 
C2 C7 6SK doub 2 n y 
C2 C3 6SK sing 3 n y 
C7 C6 6SK sing 4 n y 
N12 C10 6SK sing 5 n n 
C3 C4 6SK doub 6 n y 
C6 C8 6SK sing 7 n n 
C6 C5 6SK doub 8 n y 
C8 C10 6SK sing 9 n n 
C8 C20 6SK sing 10 n n 
C4 C5 6SK sing 11 n y 
C22 C23 6SK doub 12 n y 
C22 C21 6SK sing 13 n y 
C23 C24 6SK sing 14 n y 
C10 C13 6SK sing 15 n n 
C13 N14 6SK sing 16 n n 
C21 C20 6SK sing 17 n n 
C21 C27 6SK doub 18 n y 
C19 C16 6SK sing 19 n n 
C20 N14 6SK sing 20 n n 
C20 C29 6SK sing 21 n n 
C24 CL2 6SK sing 22 n n 
C24 C26 6SK doub 23 n y 
N14 C15 6SK sing 24 n n 
C17 C16 6SK sing 25 n n 
C27 C26 6SK sing 26 n y 
C27 N28 6SK sing 27 n n 
C16 C15 6SK sing 28 n n 
C16 C18 6SK sing 29 n n 
C29 N28 6SK sing 30 n n 
C29 O30 6SK doub 31 n n 
C3 H1 6SK sing 32 n n 
C4 H2 6SK sing 33 n n 
C5 H3 6SK sing 34 n n 
C7 H4 6SK sing 35 n n 
C8 H5 6SK sing 36 n n 
C15 H6 6SK sing 37 n n 
C15 H7 6SK sing 38 n n 
C17 H8 6SK sing 39 n n 
C17 H9 6SK sing 40 n n 
C17 H10 6SK sing 41 n n 
C18 H11 6SK sing 42 n n 
C18 H12 6SK sing 43 n n 
C18 H13 6SK sing 44 n n 
C19 H14 6SK sing 45 n n 
C19 H15 6SK sing 46 n n 
C19 H16 6SK sing 47 n n 
C23 H17 6SK sing 48 n n 
C10 H18 6SK sing 49 n n 
N12 H19 6SK sing 50 n n 
N12 H20 6SK sing 51 n n 
C13 H22 6SK sing 52 n n 
C13 H23 6SK sing 53 n n 
C22 H25 6SK sing 54 n n 
C26 H26 6SK sing 55 n n 
N28 H27 6SK sing 56 n n 
#
_atom_sites.entry_id                     5LAV 
_atom_sites.fract_transf_matrix[1][1]    0.017652 
_atom_sites.fract_transf_matrix[1][2]    0.010191 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020383 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009608 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 6SK A 1 201 1 6SK INX . 
C 3 SO4 A 1 202 1 SO4 SO4 . 
D 4 HOH A 1 301 13 HOH HOH . 
D 4 HOH A 2 302 5 HOH HOH . 
D 4 HOH A 3 303 4 HOH HOH . 
D 4 HOH A 4 304 32 HOH HOH . 
D 4 HOH A 5 305 17 HOH HOH . 
D 4 HOH A 6 306 2 HOH HOH . 
D 4 HOH A 7 307 20 HOH HOH . 
D 4 HOH A 8 308 3 HOH HOH . 
D 4 HOH A 9 309 21 HOH HOH . 
D 4 HOH A 10 310 31 HOH HOH . 
D 4 HOH A 11 311 18 HOH HOH . 
D 4 HOH A 12 312 24 HOH HOH . 
D 4 HOH A 13 313 9 HOH HOH . 
D 4 HOH A 14 314 16 HOH HOH . 
D 4 HOH A 15 315 8 HOH HOH . 
D 4 HOH A 16 316 12 HOH HOH . 
D 4 HOH A 17 317 11 HOH HOH . 
D 4 HOH A 18 318 1 HOH HOH . 
D 4 HOH A 19 319 22 HOH HOH . 
D 4 HOH A 20 320 23 HOH HOH . 
D 4 HOH A 21 321 15 HOH HOH . 
D 4 HOH A 22 322 14 HOH HOH . 
D 4 HOH A 23 323 29 HOH HOH . 
D 4 HOH A 24 324 7 HOH HOH . 
D 4 HOH A 25 325 19 HOH HOH . 
D 4 HOH A 26 326 30 HOH HOH . 
D 4 HOH A 27 327 27 HOH HOH . 
D 4 HOH A 28 328 26 HOH HOH . 
D 4 HOH A 29 329 25 HOH HOH . 
D 4 HOH A 30 330 28 HOH HOH . 
D 4 HOH A 31 331 6 HOH HOH . 
D 4 HOH A 32 332 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 6SK . . . B 2 -2.064 11.304 -2.928 1 27.65 ? C2 6SK 201 A 1 
HETATM 2 C C3 6SK . . . B 2 -1.457 10.219 -2.319 1 32.32 ? C3 6SK 201 A 1 
HETATM 3 C C4 6SK . . . B 2 -2.161 9.478 -1.379 1 32.39 ? C4 6SK 201 A 1 
HETATM 4 C C5 6SK . . . B 2 -3.473 9.811 -1.057 1 33.64 ? C5 6SK 201 A 1 
HETATM 5 C C6 6SK . . . B 2 -4.091 10.905 -1.675 1 30.37 ? C6 6SK 201 A 1 
HETATM 6 C C7 6SK . . . B 2 -3.372 11.632 -2.614 1 32.5 ? C7 6SK 201 A 1 
HETATM 7 C C8 6SK . . . B 2 -5.52 11.355 -1.406 1 32.39 ? C8 6SK 201 A 1 
HETATM 8 C C15 6SK . . . B 2 -7.816 12.903 1.086 1 36.64 ? C15 6SK 201 A 1 
HETATM 9 C C16 6SK . . . B 2 -9.067 13.706 0.701 1 38.49 ? C16 6SK 201 A 1 
HETATM 10 C C17 6SK . . . B 2 -10.187 12.798 0.181 1 38.29 ? C17 6SK 201 A 1 
HETATM 11 C C18 6SK . . . B 2 -9.58 14.411 1.949 1 37.07 ? C18 6SK 201 A 1 
HETATM 12 C C19 6SK . . . B 2 -8.718 14.783 -0.33 1 37.56 ? C19 6SK 201 A 1 
HETATM 13 C C21 6SK . . . B 2 -5.074 13.612 -0.36 1 28.29 ? C21 6SK 201 A 1 
HETATM 14 C C23 6SK . . . B 2 -4.462 15.793 -1.185 1 27.93 ? C23 6SK 201 A 1 
HETATM 15 C C24 6SK . . . B 2 -3.571 15.975 -0.133 1 24.76 ? C24 6SK 201 A 1 
HETATM 16 C C27 6SK . . . B 2 -4.18 13.787 0.692 1 29.13 ? C27 6SK 201 A 1 
HETATM 17 CL CL1 6SK . . . B 2 -1.23 12.242 -4.107 1 35.01 ? CL1 6SK 201 A 1 
HETATM 18 C C10 6SK . . . B 2 -6.519 10.195 -1.144 1 34 ? C10 6SK 201 A 1 
HETATM 19 N N12 6SK . . . B 2 -6.982 9.593 -2.399 1 36.17 ? N12 6SK 201 A 1 
HETATM 20 C C13 6SK . . . B 2 -7.682 10.905 -0.428 1 36.45 ? C13 6SK 201 A 1 
HETATM 21 N N14 6SK . . . B 2 -7.192 12.286 -0.108 1 35.75 ? N14 6SK 201 A 1 
HETATM 22 C C20 6SK . . . B 2 -5.7 12.248 -0.165 1 29.33 ? C20 6SK 201 A 1 
HETATM 23 C C22 6SK . . . B 2 -5.216 14.624 -1.294 1 30.66 ? C22 6SK 201 A 1 
HETATM 24 CL CL2 6SK . . . B 2 -2.616 17.422 0.037 1 29.02 ? CL2 6SK 201 A 1 
HETATM 25 C C26 6SK . . . B 2 -3.434 14.968 0.806 1 26.31 ? C26 6SK 201 A 1 
HETATM 26 N N28 6SK . . . B 2 -4.19 12.671 1.513 1 29.31 ? N28 6SK 201 A 1 
HETATM 27 C C29 6SK . . . B 2 -5.044 11.723 1.094 1 32.3 ? C29 6SK 201 A 1 
HETATM 28 O O30 6SK . . . B 2 -5.221 10.661 1.649 1 32.93 ? O30 6SK 201 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#