data_5LAX # _model_server_result.job_id mJwrZ6fEjZA7mc5C-5oqtQ _model_server_result.datetime_utc '2025-07-31 12:25:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":200}' # _entry.id 5LAX # _exptl.entry_id 5LAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LAX _cell.length_a 69.176 _cell.length_b 73.45 _cell.length_c 144.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,H,I,L 1 1 C,D,F,G,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 15 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 B SG CYS 117 B CYS 117 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 C SG CYS 107 C CYS 107 1_555 C SG CYS 163 C CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 D SG CYS 15 D CYS 15 1_555 D SG CYS 79 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf6 D SG CYS 117 D CYS 117 1_555 D SG CYS 173 D CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 237 n n C1 O1B MLA doub 238 n n C1 C2 MLA sing 239 n n O1A H1A MLA sing 240 n n C2 C3 MLA sing 241 n n C2 HC21 MLA sing 242 n n C2 HC22 MLA sing 243 n n C3 O3A MLA doub 244 n n C3 O3B MLA sing 245 n n O3B H3B MLA sing 246 n n # _atom_sites.entry_id 5LAX _atom_sites.fract_transf_matrix[1][1] 0.014456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MLA D 1 200 200 MLA MLA . H 5 HOH A 1 201 125 HOH HOH . H 5 HOH A 2 202 194 HOH HOH . H 5 HOH A 3 203 205 HOH HOH . H 5 HOH A 4 204 252 HOH HOH . H 5 HOH A 5 205 49 HOH HOH . H 5 HOH A 6 206 217 HOH HOH . H 5 HOH A 7 207 258 HOH HOH . H 5 HOH A 8 208 195 HOH HOH . H 5 HOH A 9 209 20 HOH HOH . H 5 HOH A 10 210 157 HOH HOH . H 5 HOH A 11 211 220 HOH HOH . H 5 HOH A 12 212 43 HOH HOH . H 5 HOH A 13 213 100 HOH HOH . H 5 HOH A 14 214 172 HOH HOH . H 5 HOH A 15 215 198 HOH HOH . H 5 HOH A 16 216 126 HOH HOH . H 5 HOH A 17 217 121 HOH HOH . H 5 HOH A 18 218 187 HOH HOH . H 5 HOH A 19 219 266 HOH HOH . H 5 HOH A 20 220 41 HOH HOH . H 5 HOH A 21 221 31 HOH HOH . H 5 HOH A 22 222 199 HOH HOH . H 5 HOH A 23 223 91 HOH HOH . H 5 HOH A 24 224 104 HOH HOH . H 5 HOH A 25 225 94 HOH HOH . H 5 HOH A 26 226 134 HOH HOH . H 5 HOH A 27 227 204 HOH HOH . H 5 HOH A 28 228 48 HOH HOH . H 5 HOH A 29 229 29 HOH HOH . H 5 HOH A 30 230 38 HOH HOH . H 5 HOH A 31 231 222 HOH HOH . H 5 HOH A 32 232 127 HOH HOH . H 5 HOH A 33 233 261 HOH HOH . H 5 HOH A 34 234 59 HOH HOH . H 5 HOH A 35 235 30 HOH HOH . H 5 HOH A 36 236 93 HOH HOH . H 5 HOH A 37 237 58 HOH HOH . H 5 HOH A 38 238 40 HOH HOH . H 5 HOH A 39 239 116 HOH HOH . H 5 HOH A 40 240 11 HOH HOH . H 5 HOH A 41 241 27 HOH HOH . H 5 HOH A 42 242 109 HOH HOH . H 5 HOH A 43 243 206 HOH HOH . H 5 HOH A 44 244 14 HOH HOH . H 5 HOH A 45 245 106 HOH HOH . H 5 HOH A 46 246 55 HOH HOH . H 5 HOH A 47 247 39 HOH HOH . H 5 HOH A 48 248 35 HOH HOH . H 5 HOH A 49 249 239 HOH HOH . H 5 HOH A 50 250 196 HOH HOH . H 5 HOH A 51 251 158 HOH HOH . H 5 HOH A 52 252 13 HOH HOH . H 5 HOH A 53 253 113 HOH HOH . H 5 HOH A 54 254 159 HOH HOH . H 5 HOH A 55 255 163 HOH HOH . H 5 HOH A 56 256 212 HOH HOH . H 5 HOH A 57 257 34 HOH HOH . H 5 HOH A 58 258 263 HOH HOH . H 5 HOH A 59 259 17 HOH HOH . H 5 HOH A 60 260 139 HOH HOH . H 5 HOH A 61 261 6 HOH HOH . H 5 HOH A 62 262 110 HOH HOH . H 5 HOH A 63 263 10 HOH HOH . H 5 HOH A 64 264 99 HOH HOH . H 5 HOH A 65 265 160 HOH HOH . H 5 HOH A 66 266 33 HOH HOH . H 5 HOH A 67 267 161 HOH HOH . H 5 HOH A 68 268 101 HOH HOH . H 5 HOH A 69 269 46 HOH HOH . H 5 HOH A 70 270 202 HOH HOH . H 5 HOH A 71 271 201 HOH HOH . H 5 HOH A 72 272 150 HOH HOH . H 5 HOH A 73 273 132 HOH HOH . H 5 HOH A 74 274 197 HOH HOH . H 5 HOH A 75 275 216 HOH HOH . H 5 HOH A 76 276 213 HOH HOH . H 5 HOH A 77 277 131 HOH HOH . H 5 HOH A 78 278 54 HOH HOH . H 5 HOH A 79 279 219 HOH HOH . H 5 HOH A 80 280 130 HOH HOH . H 5 HOH A 81 281 207 HOH HOH . H 5 HOH A 82 282 190 HOH HOH . H 5 HOH A 83 283 208 HOH HOH . H 5 HOH A 84 284 135 HOH HOH . H 5 HOH A 85 285 15 HOH HOH . H 5 HOH A 86 286 221 HOH HOH . H 5 HOH A 87 287 26 HOH HOH . H 5 HOH A 88 288 200 HOH HOH . H 5 HOH A 89 289 107 HOH HOH . H 5 HOH A 90 290 47 HOH HOH . H 5 HOH A 91 291 56 HOH HOH . H 5 HOH A 92 292 180 HOH HOH . H 5 HOH A 93 293 211 HOH HOH . H 5 HOH A 94 294 146 HOH HOH . H 5 HOH A 95 295 51 HOH HOH . H 5 HOH A 96 296 152 HOH HOH . H 5 HOH A 97 297 115 HOH HOH . H 5 HOH A 98 298 151 HOH HOH . H 5 HOH A 99 299 177 HOH HOH . H 5 HOH A 100 300 138 HOH HOH . H 5 HOH A 101 301 136 HOH HOH . I 5 HOH B 1 201 255 HOH HOH . I 5 HOH B 2 202 9 HOH HOH . I 5 HOH B 3 203 103 HOH HOH . I 5 HOH B 4 204 226 HOH HOH . I 5 HOH B 5 205 145 HOH HOH . I 5 HOH B 6 206 36 HOH HOH . I 5 HOH B 7 207 124 HOH HOH . I 5 HOH B 8 208 165 HOH HOH . I 5 HOH B 9 209 112 HOH HOH . I 5 HOH B 10 210 140 HOH HOH . I 5 HOH B 11 211 120 HOH HOH . I 5 HOH B 12 212 166 HOH HOH . I 5 HOH B 13 213 1 HOH HOH . I 5 HOH B 14 214 65 HOH HOH . I 5 HOH B 15 215 170 HOH HOH . I 5 HOH B 16 216 171 HOH HOH . I 5 HOH B 17 217 63 HOH HOH . I 5 HOH B 18 218 82 HOH HOH . I 5 HOH B 19 219 64 HOH HOH . I 5 HOH B 20 220 83 HOH HOH . I 5 HOH B 21 221 179 HOH HOH . I 5 HOH B 22 222 62 HOH HOH . I 5 HOH B 23 223 142 HOH HOH . I 5 HOH B 24 224 102 HOH HOH . I 5 HOH B 25 225 88 HOH HOH . I 5 HOH B 26 226 147 HOH HOH . I 5 HOH B 27 227 84 HOH HOH . I 5 HOH B 28 228 234 HOH HOH . I 5 HOH B 29 229 186 HOH HOH . I 5 HOH B 30 230 227 HOH HOH . I 5 HOH B 31 231 90 HOH HOH . I 5 HOH B 32 232 71 HOH HOH . I 5 HOH B 33 233 67 HOH HOH . I 5 HOH B 34 234 5 HOH HOH . I 5 HOH B 35 235 228 HOH HOH . I 5 HOH B 36 236 66 HOH HOH . I 5 HOH B 37 237 188 HOH HOH . I 5 HOH B 38 238 69 HOH HOH . I 5 HOH B 39 239 243 HOH HOH . I 5 HOH B 40 240 181 HOH HOH . I 5 HOH B 41 241 12 HOH HOH . I 5 HOH B 42 242 122 HOH HOH . I 5 HOH B 43 243 53 HOH HOH . I 5 HOH B 44 244 192 HOH HOH . I 5 HOH B 45 245 141 HOH HOH . I 5 HOH B 46 246 60 HOH HOH . I 5 HOH B 47 247 123 HOH HOH . I 5 HOH B 48 248 167 HOH HOH . I 5 HOH B 49 249 70 HOH HOH . I 5 HOH B 50 250 95 HOH HOH . I 5 HOH B 51 251 174 HOH HOH . I 5 HOH B 52 252 117 HOH HOH . I 5 HOH B 53 253 209 HOH HOH . I 5 HOH B 54 254 229 HOH HOH . I 5 HOH B 55 255 114 HOH HOH . I 5 HOH B 56 256 52 HOH HOH . I 5 HOH B 57 257 175 HOH HOH . J 5 HOH C 1 201 223 HOH HOH . J 5 HOH C 2 202 19 HOH HOH . J 5 HOH C 3 203 241 HOH HOH . J 5 HOH C 4 204 68 HOH HOH . J 5 HOH C 5 205 133 HOH HOH . J 5 HOH C 6 206 18 HOH HOH . J 5 HOH C 7 207 233 HOH HOH . J 5 HOH C 8 208 164 HOH HOH . J 5 HOH C 9 209 231 HOH HOH . J 5 HOH C 10 210 118 HOH HOH . J 5 HOH C 11 211 238 HOH HOH . J 5 HOH C 12 212 265 HOH HOH . J 5 HOH C 13 213 16 HOH HOH . J 5 HOH C 14 214 24 HOH HOH . J 5 HOH C 15 215 236 HOH HOH . J 5 HOH C 16 216 244 HOH HOH . J 5 HOH C 17 217 75 HOH HOH . J 5 HOH C 18 218 119 HOH HOH . J 5 HOH C 19 219 74 HOH HOH . J 5 HOH C 20 220 144 HOH HOH . J 5 HOH C 21 221 8 HOH HOH . J 5 HOH C 22 222 22 HOH HOH . J 5 HOH C 23 223 42 HOH HOH . J 5 HOH C 24 224 162 HOH HOH . J 5 HOH C 25 225 44 HOH HOH . J 5 HOH C 26 226 156 HOH HOH . J 5 HOH C 27 227 237 HOH HOH . J 5 HOH C 28 228 89 HOH HOH . J 5 HOH C 29 229 73 HOH HOH . J 5 HOH C 30 230 176 HOH HOH . J 5 HOH C 31 231 96 HOH HOH . J 5 HOH C 32 232 262 HOH HOH . J 5 HOH C 33 233 169 HOH HOH . J 5 HOH C 34 234 235 HOH HOH . J 5 HOH C 35 235 129 HOH HOH . J 5 HOH C 36 236 191 HOH HOH . J 5 HOH C 37 237 2 HOH HOH . J 5 HOH C 38 238 50 HOH HOH . J 5 HOH C 39 239 105 HOH HOH . J 5 HOH C 40 240 245 HOH HOH . J 5 HOH C 41 241 230 HOH HOH . J 5 HOH C 42 242 128 HOH HOH . J 5 HOH C 43 243 149 HOH HOH . J 5 HOH C 44 244 242 HOH HOH . J 5 HOH C 45 245 210 HOH HOH . J 5 HOH C 46 246 80 HOH HOH . J 5 HOH C 47 247 143 HOH HOH . K 5 HOH D 1 301 183 HOH HOH . K 5 HOH D 2 302 256 HOH HOH . K 5 HOH D 3 303 111 HOH HOH . K 5 HOH D 4 304 189 HOH HOH . K 5 HOH D 5 305 259 HOH HOH . K 5 HOH D 6 306 32 HOH HOH . K 5 HOH D 7 307 249 HOH HOH . K 5 HOH D 8 308 260 HOH HOH . K 5 HOH D 9 309 86 HOH HOH . K 5 HOH D 10 310 254 HOH HOH . K 5 HOH D 11 311 98 HOH HOH . K 5 HOH D 12 312 92 HOH HOH . K 5 HOH D 13 313 240 HOH HOH . K 5 HOH D 14 314 25 HOH HOH . K 5 HOH D 15 315 225 HOH HOH . K 5 HOH D 16 316 37 HOH HOH . K 5 HOH D 17 317 193 HOH HOH . K 5 HOH D 18 318 173 HOH HOH . K 5 HOH D 19 319 137 HOH HOH . K 5 HOH D 20 320 148 HOH HOH . K 5 HOH D 21 321 76 HOH HOH . K 5 HOH D 22 322 23 HOH HOH . K 5 HOH D 23 323 78 HOH HOH . K 5 HOH D 24 324 224 HOH HOH . K 5 HOH D 25 325 21 HOH HOH . K 5 HOH D 26 326 178 HOH HOH . K 5 HOH D 27 327 253 HOH HOH . K 5 HOH D 28 328 153 HOH HOH . K 5 HOH D 29 329 185 HOH HOH . K 5 HOH D 30 330 218 HOH HOH . K 5 HOH D 31 331 28 HOH HOH . K 5 HOH D 32 332 257 HOH HOH . K 5 HOH D 33 333 7 HOH HOH . K 5 HOH D 34 334 85 HOH HOH . K 5 HOH D 35 335 251 HOH HOH . K 5 HOH D 36 336 264 HOH HOH . K 5 HOH D 37 337 247 HOH HOH . K 5 HOH D 38 338 168 HOH HOH . K 5 HOH D 39 339 232 HOH HOH . K 5 HOH D 40 340 246 HOH HOH . K 5 HOH D 41 341 97 HOH HOH . K 5 HOH D 42 342 72 HOH HOH . K 5 HOH D 43 343 154 HOH HOH . K 5 HOH D 44 344 87 HOH HOH . K 5 HOH D 45 345 77 HOH HOH . K 5 HOH D 46 346 248 HOH HOH . K 5 HOH D 47 347 61 HOH HOH . K 5 HOH D 48 348 250 HOH HOH . K 5 HOH D 49 349 215 HOH HOH . K 5 HOH D 50 350 81 HOH HOH . K 5 HOH D 51 351 155 HOH HOH . K 5 HOH D 52 352 79 HOH HOH . K 5 HOH D 53 353 184 HOH HOH . K 5 HOH D 54 354 214 HOH HOH . K 5 HOH D 55 355 45 HOH HOH . K 5 HOH D 56 356 57 HOH HOH . L 5 HOH E 1 101 203 HOH HOH . L 5 HOH E 2 102 4 HOH HOH . L 5 HOH E 3 103 3 HOH HOH . L 5 HOH E 4 104 108 HOH HOH . M 5 HOH F 1 101 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . G 4 2.346 38.561 -22.677 1 63.64 ? C1 MLA 200 D 1 HETATM 2 O O1A MLA . . . G 4 3.318 38.213 -21.96 1 57.95 ? O1A MLA 200 D 1 HETATM 3 O O1B MLA . . . G 4 2.439 39.442 -23.586 1 68.28 ? O1B MLA 200 D 1 HETATM 4 C C2 MLA . . . G 4 1.009 37.878 -22.438 1 59.6 ? C2 MLA 200 D 1 HETATM 5 C C3 MLA . . . G 4 0.52 37.953 -20.998 1 60.66 ? C3 MLA 200 D 1 HETATM 6 O O3A MLA . . . G 4 -0.477 37.266 -20.708 1 61.11 ? O3A MLA 200 D 1 HETATM 7 O O3B MLA . . . G 4 1.075 38.673 -20.129 1 62.25 ? O3B MLA 200 D 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #