data_5LAY
#
_model_server_result.job_id            vA3QhgOhKNvEbd1oNTqV7Q 
_model_server_result.datetime_utc      '2024-10-12 15:25:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lay 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":202}' 
#
_entry.id    5LAY 
#
_exptl.entry_id    5LAY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              514.419 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(3~{S},3'~{S},4'~{S},5'~{S})-4'-azanyl-6-chloranyl-3'-(3-chloranyl-2-fluoranyl-phenyl)-1'-[(3-ethoxyphenyl)methyl]-5'-methyl-spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5LAY 
_cell.length_a            71.45 
_cell.length_b            71.45 
_cell.length_c            520.977 
_cell.Z_PDB               72 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LAY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,I,J,K,V 1 1 
B,L,M,W 2 1 
C,N,O,X 3 1 
D,P,Q,Y 4 1 
E,R,S,T,Z 5 1 
F,U,AA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 M N N 
? 4 O N N 
? 4 Q N N 
? 4 T N N 
? 4 U N N 
#
_chem_comp.formula           'C27 H26 Cl2 F N3 O2' 
_chem_comp.formula_weight    514.419 
_chem_comp.id                6SS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(3~{S},3'~{S},4'~{S},5'~{S})-4'-azanyl-6-chloranyl-3'-(3-chloranyl-2-fluoranyl-phenyl)-1'-[(3-ethoxyphenyl)methyl]-5'-methyl-spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL2 C30 6SS sing 1 n n 
C30 C32 6SS doub 2 n y 
C30 C29 6SS sing 3 n y 
C32 C33 6SS sing 4 n y 
CL1 C2 6SS sing 5 n n 
C29 C28 6SS doub 6 n y 
C33 N34 6SS sing 7 n n 
C33 C27 6SS doub 8 n y 
C2 C3 6SS doub 9 n y 
C2 C37 6SS sing 10 n y 
C28 C27 6SS sing 11 n y 
C3 C4 6SS sing 12 n y 
F38 C37 6SS sing 13 n n 
N34 C35 6SS sing 14 n n 
C27 C26 6SS sing 15 n n 
C37 C6 6SS doub 16 n y 
C4 C5 6SS doub 17 n y 
C35 C26 6SS sing 18 n n 
C35 O36 6SS doub 19 n n 
C6 C5 6SS sing 20 n y 
C6 C7 6SS sing 21 n n 
C26 C7 6SS sing 22 n n 
C26 N15 6SS sing 23 n n 
C7 C9 6SS sing 24 n n 
C18 C19 6SS doub 25 n y 
C18 C17 6SS sing 26 n y 
C16 N15 6SS sing 27 n n 
C16 C17 6SS sing 28 n n 
N15 C12 6SS sing 29 n n 
C19 C20 6SS sing 30 n y 
C17 C25 6SS doub 31 n y 
C9 C12 6SS sing 32 n n 
C9 N11 6SS sing 33 n n 
C12 C14 6SS sing 34 n n 
C20 C21 6SS doub 35 n y 
C25 C21 6SS sing 36 n y 
C21 O22 6SS sing 37 n n 
O22 C23 6SS sing 38 n n 
C23 C24 6SS sing 39 n n 
C3 H1 6SS sing 40 n n 
C4 H2 6SS sing 41 n n 
C5 H3 6SS sing 42 n n 
C7 H4 6SS sing 43 n n 
C12 H5 6SS sing 44 n n 
C16 H6 6SS sing 45 n n 
C16 H7 6SS sing 46 n n 
C18 H8 6SS sing 47 n n 
C19 H9 6SS sing 48 n n 
C23 H10 6SS sing 49 n n 
C23 H11 6SS sing 50 n n 
C24 H12 6SS sing 51 n n 
C24 H13 6SS sing 52 n n 
C24 H14 6SS sing 53 n n 
C32 H15 6SS sing 54 n n 
C9 H16 6SS sing 55 n n 
N11 H17 6SS sing 56 n n 
N11 H18 6SS sing 57 n n 
C14 H20 6SS sing 58 n n 
C14 H21 6SS sing 59 n n 
C14 H22 6SS sing 60 n n 
C20 H24 6SS sing 61 n n 
C25 H25 6SS sing 62 n n 
C28 H26 6SS sing 63 n n 
C29 H27 6SS sing 64 n n 
N34 H28 6SS sing 65 n n 
#
_atom_sites.entry_id                     5LAY 
_atom_sites.fract_transf_matrix[1][1]    0.013996 
_atom_sites.fract_transf_matrix[1][2]    0.00808 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016161 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GOL A 1 201 6 GOL GOL . 
H 2 GOL A 1 202 7 GOL GOL . 
I 2 GOL A 1 203 8 GOL GOL . 
J 3 SO4 A 1 204 13 SO4 SO4 . 
K 4 6SS A 1 205 1 6SS INX . 
L 3 SO4 B 1 201 14 SO4 SO4 . 
M 4 6SS B 1 202 2 6SS INX . 
N 2 GOL C 1 201 5 GOL GOL . 
O 4 6SS C 1 202 3 6SS INX . 
P 3 SO4 D 1 201 12 SO4 SO4 . 
Q 4 6SS D 1 202 4 6SS INX . 
R 2 GOL E 1 201 9 GOL GOL . 
S 3 SO4 E 1 202 15 SO4 SO4 . 
T 4 6SS E 1 203 5 6SS INX . 
U 4 6SS F 1 201 6 6SS INX . 
V 5 HOH A 1 301 10 HOH HOH . 
V 5 HOH A 2 302 291 HOH HOH . 
V 5 HOH A 3 303 185 HOH HOH . 
V 5 HOH A 4 304 49 HOH HOH . 
V 5 HOH A 5 305 306 HOH HOH . 
V 5 HOH A 6 306 201 HOH HOH . 
V 5 HOH A 7 307 304 HOH HOH . 
V 5 HOH A 8 308 51 HOH HOH . 
V 5 HOH A 9 309 162 HOH HOH . 
V 5 HOH A 10 310 21 HOH HOH . 
V 5 HOH A 11 311 311 HOH HOH . 
V 5 HOH A 12 312 280 HOH HOH . 
V 5 HOH A 13 313 310 HOH HOH . 
V 5 HOH A 14 314 18 HOH HOH . 
V 5 HOH A 15 315 102 HOH HOH . 
V 5 HOH A 16 316 230 HOH HOH . 
V 5 HOH A 17 317 94 HOH HOH . 
V 5 HOH A 18 318 317 HOH HOH . 
V 5 HOH A 19 319 314 HOH HOH . 
V 5 HOH A 20 320 325 HOH HOH . 
V 5 HOH A 21 321 320 HOH HOH . 
V 5 HOH A 22 322 116 HOH HOH . 
V 5 HOH A 23 323 166 HOH HOH . 
V 5 HOH A 24 324 235 HOH HOH . 
V 5 HOH A 25 325 175 HOH HOH . 
V 5 HOH A 26 326 321 HOH HOH . 
W 5 HOH B 1 301 305 HOH HOH . 
W 5 HOH B 2 302 315 HOH HOH . 
W 5 HOH B 3 303 167 HOH HOH . 
W 5 HOH B 4 304 1 HOH HOH . 
W 5 HOH B 5 305 50 HOH HOH . 
W 5 HOH B 6 306 211 HOH HOH . 
W 5 HOH B 7 307 326 HOH HOH . 
W 5 HOH B 8 308 87 HOH HOH . 
W 5 HOH B 9 309 285 HOH HOH . 
W 5 HOH B 10 310 88 HOH HOH . 
W 5 HOH B 11 311 318 HOH HOH . 
W 5 HOH B 12 312 95 HOH HOH . 
W 5 HOH B 13 313 7 HOH HOH . 
W 5 HOH B 14 314 25 HOH HOH . 
W 5 HOH B 15 315 41 HOH HOH . 
W 5 HOH B 16 316 284 HOH HOH . 
W 5 HOH B 17 317 149 HOH HOH . 
W 5 HOH B 18 318 17 HOH HOH . 
W 5 HOH B 19 319 122 HOH HOH . 
W 5 HOH B 20 320 219 HOH HOH . 
W 5 HOH B 21 321 286 HOH HOH . 
W 5 HOH B 22 322 74 HOH HOH . 
W 5 HOH B 23 323 110 HOH HOH . 
X 5 HOH C 1 301 43 HOH HOH . 
X 5 HOH C 2 302 197 HOH HOH . 
X 5 HOH C 3 303 237 HOH HOH . 
X 5 HOH C 4 304 309 HOH HOH . 
X 5 HOH C 5 305 16 HOH HOH . 
X 5 HOH C 6 306 324 HOH HOH . 
X 5 HOH C 7 307 257 HOH HOH . 
X 5 HOH C 8 308 322 HOH HOH . 
X 5 HOH C 9 309 114 HOH HOH . 
X 5 HOH C 10 310 308 HOH HOH . 
X 5 HOH C 11 311 125 HOH HOH . 
X 5 HOH C 12 312 198 HOH HOH . 
X 5 HOH C 13 313 217 HOH HOH . 
X 5 HOH C 14 314 157 HOH HOH . 
Y 5 HOH D 1 301 91 HOH HOH . 
Y 5 HOH D 2 302 307 HOH HOH . 
Y 5 HOH D 3 303 73 HOH HOH . 
Y 5 HOH D 4 304 319 HOH HOH . 
Y 5 HOH D 5 305 323 HOH HOH . 
Y 5 HOH D 6 306 61 HOH HOH . 
Y 5 HOH D 7 307 103 HOH HOH . 
Y 5 HOH D 8 308 39 HOH HOH . 
Y 5 HOH D 9 309 313 HOH HOH . 
Y 5 HOH D 10 310 105 HOH HOH . 
Y 5 HOH D 11 311 13 HOH HOH . 
Y 5 HOH D 12 312 169 HOH HOH . 
Y 5 HOH D 13 313 109 HOH HOH . 
Y 5 HOH D 14 314 69 HOH HOH . 
Y 5 HOH D 15 315 316 HOH HOH . 
Y 5 HOH D 16 316 180 HOH HOH . 
Y 5 HOH D 17 317 28 HOH HOH . 
Y 5 HOH D 18 318 82 HOH HOH . 
Y 5 HOH D 19 319 241 HOH HOH . 
Y 5 HOH D 20 320 247 HOH HOH . 
Y 5 HOH D 21 321 120 HOH HOH . 
Y 5 HOH D 22 322 312 HOH HOH . 
Y 5 HOH D 23 323 294 HOH HOH . 
Y 5 HOH D 24 324 278 HOH HOH . 
Y 5 HOH D 25 325 60 HOH HOH . 
Y 5 HOH D 26 326 282 HOH HOH . 
Z 5 HOH E 1 301 159 HOH HOH . 
Z 5 HOH E 2 302 303 HOH HOH . 
Z 5 HOH E 3 303 244 HOH HOH . 
Z 5 HOH E 4 304 243 HOH HOH . 
Z 5 HOH E 5 305 273 HOH HOH . 
Z 5 HOH E 6 306 101 HOH HOH . 
AA 5 HOH F 1 301 172 HOH HOH . 
AA 5 HOH F 2 302 155 HOH HOH . 
AA 5 HOH F 3 303 194 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 6SS . . . M 4 34.894 -5.755 6.886 1 7.73 ? C2 6SS 202 B 1 
HETATM 2 C C3 6SS . . . M 4 34.957 -5.368 5.558 1 7.34 ? C3 6SS 202 B 1 
HETATM 3 C C4 6SS . . . M 4 34.563 -4.087 5.2 1 7.11 ? C4 6SS 202 B 1 
HETATM 4 C C5 6SS . . . M 4 34.102 -3.194 6.16 1 6.95 ? C5 6SS 202 B 1 
HETATM 5 C C6 6SS . . . M 4 34.026 -3.576 7.506 1 6.91 ? C6 6SS 202 B 1 
HETATM 6 C C7 6SS . . . M 4 33.536 -2.652 8.618 1 6.39 ? C7 6SS 202 B 1 
HETATM 7 C C12 6SS . . . M 4 32.867 -0.494 9.465 1 5.66 ? C12 6SS 202 B 1 
HETATM 8 C C16 6SS . . . M 4 30.45 -1.054 9.957 1 5.88 ? C16 6SS 202 B 1 
HETATM 9 C C17 6SS . . . M 4 30.335 -0.357 11.29 1 5.66 ? C17 6SS 202 B 1 
HETATM 10 C C18 6SS . . . M 4 30.573 -1.055 12.469 1 5.24 ? C18 6SS 202 B 1 
HETATM 11 C C19 6SS . . . M 4 30.47 -0.403 13.687 1 5.27 ? C19 6SS 202 B 1 
HETATM 12 C C21 6SS . . . M 4 29.882 1.651 12.547 1 5.71 ? C21 6SS 202 B 1 
HETATM 13 C C23 6SS . . . M 4 28.862 3.622 13.575 1 6.27 ? C23 6SS 202 B 1 
HETATM 14 C C24 6SS . . . M 4 28.435 5.029 13.138 1 6.19 ? C24 6SS 202 B 1 
HETATM 15 C C27 6SS . . . M 4 31.493 -3.946 9.356 1 6.69 ? C27 6SS 202 B 1 
HETATM 16 C C30 6SS . . . M 4 30.117 -6.338 9.82 1 7 ? C30 6SS 202 B 1 
HETATM 17 C C32 6SS . . . M 4 29.826 -5.582 8.701 1 6.93 ? C32 6SS 202 B 1 
HETATM 18 C C33 6SS . . . M 4 30.515 -4.384 8.457 1 6.9 ? C33 6SS 202 B 1 
HETATM 19 C C35 6SS . . . M 4 31.21 -2.427 7.533 1 6.34 ? C35 6SS 202 B 1 
HETATM 20 C C37 6SS . . . M 4 34.433 -4.869 7.85 1 7.45 ? C37 6SS 202 B 1 
HETATM 21 CL CL1 6SS . . . M 4 35.367 -7.348 7.385 1 8.92 ? CL1 6SS 202 B 1 
HETATM 22 C C9 6SS . . . M 4 33.841 -1.143 8.436 1 5.94 ? C9 6SS 202 B 1 
HETATM 23 N N11 6SS . . . M 4 35.266 -0.878 8.685 1 5.58 ? N11 6SS 202 B 1 
HETATM 24 C C14 6SS . . . M 4 33.59 -0.074 10.748 1 5.12 ? C14 6SS 202 B 1 
HETATM 25 N N15 6SS . . . M 4 31.837 -1.548 9.778 1 6.03 ? N15 6SS 202 B 1 
HETATM 26 C C20 6SS . . . M 4 30.126 0.945 13.734 1 5.56 ? C20 6SS 202 B 1 
HETATM 27 O O22 6SS . . . M 4 29.553 2.974 12.498 1 6.12 ? O22 6SS 202 B 1 
HETATM 28 C C25 6SS . . . M 4 29.994 0.988 11.33 1 5.73 ? C25 6SS 202 B 1 
HETATM 29 C C26 6SS . . . M 4 32.008 -2.647 8.798 1 6.3 ? C26 6SS 202 B 1 
HETATM 30 C C28 6SS . . . M 4 31.774 -4.702 10.48 1 6.73 ? C28 6SS 202 B 1 
HETATM 31 C C29 6SS . . . M 4 31.095 -5.895 10.705 1 6.7 ? C29 6SS 202 B 1 
HETATM 32 CL CL2 6SS . . . M 4 29.256 -7.822 10.118 1 7.58 ? CL2 6SS 202 B 1 
HETATM 33 N N34 6SS . . . M 4 30.383 -3.471 7.416 1 6.61 ? N34 6SS 202 B 1 
HETATM 34 O O36 6SS . . . M 4 31.265 -1.498 6.76 1 6.32 ? O36 6SS 202 B 1 
HETATM 35 F F38 6SS . . . M 4 34.4 -5.307 9.127 1 7.59 ? F38 6SS 202 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           35 
#