data_5LAZ # _model_server_result.job_id wjy1YenFIYgoQjbcp31Veg _model_server_result.datetime_utc '2025-01-10 23:05:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5laz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5LAZ # _exptl.entry_id 5LAZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 566.45 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4-[(2~{R},3~{a}~{S},5~{S},6~{S},6~{a}~{S})-6'-chloranyl-6-(3-chloranyl-2-fluoranyl-phenyl)-4-(cyclopropylmethyl)-2'-oxidanylidene-spiro[1,2,3,3~{a},6,6~{a}-hexahydropyrrolo[3,2-b]pyrrole-5,3'-1~{H}-indole]-2-yl]benzoic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LAZ _cell.length_a 55.839 _cell.length_b 55.839 _cell.length_c 105.739 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LAZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C ZN ZN . A ZN 202 1_555 E O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc2 C ZN ZN . A ZN 202 1_555 E O HOH . A HOH 303 10_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? # _chem_comp.formula 'C30 H26 Cl2 F N3 O3' _chem_comp.formula_weight 566.45 _chem_comp.id 6ST _chem_comp.mon_nstd_flag . _chem_comp.name "4-[(2~{R},3~{a}~{S},5~{S},6~{S},6~{a}~{S})-6'-chloranyl-6-(3-chloranyl-2-fluoranyl-phenyl)-4-(cyclopropylmethyl)-2'-oxidanylidene-spiro[1,2,3,3~{a},6,6~{a}-hexahydropyrrolo[3,2-b]pyrrole-5,3'-1~{H}-indole]-2-yl]benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C2 6ST doub 1 n n C2 O1 6ST sing 2 n n C2 C4 6ST sing 3 n n C9 C4 6ST doub 4 n y C9 C8 6ST sing 5 n y C4 C5 6ST sing 6 n y C8 C7 6ST doub 7 n y C5 C6 6ST doub 8 n y C7 C6 6ST sing 9 n y C7 C10 6ST sing 10 n n CL2 C24 6ST sing 11 n n C10 N17 6ST sing 12 n n C10 C12 6ST sing 13 n n F27 C26 6ST sing 14 n n N17 C15 6ST sing 15 n n C24 C26 6ST doub 16 n y C24 C23 6ST sing 17 n y C26 C20 6ST sing 18 n y C23 C22 6ST doub 19 n y C20 C18 6ST sing 20 n n C20 C21 6ST doub 21 n y C12 C13 6ST sing 22 n n C15 C18 6ST sing 23 n n C15 C13 6ST sing 24 n n C18 C28 6ST sing 25 n n C22 C21 6ST sing 26 n y C37 C36 6ST doub 27 n y C37 C38 6ST sing 28 n y C36 C34 6ST sing 29 n y C13 N39 6ST sing 30 n n N39 C28 6ST sing 31 n n N39 C40 6ST sing 32 n n C28 C38 6ST sing 33 n n C28 C29 6ST sing 34 n n C38 C32 6ST doub 35 n y C34 CL3 6ST sing 36 n n C34 C33 6ST doub 37 n y C43 C41 6ST sing 38 n n C43 C42 6ST sing 39 n n C41 C40 6ST sing 40 n n C41 C42 6ST sing 41 n n C32 C33 6ST sing 42 n y C32 N31 6ST sing 43 n n C29 O30 6ST doub 44 n n C29 N31 6ST sing 45 n n C5 H1 6ST sing 46 n n C6 H2 6ST sing 47 n n C8 H3 6ST sing 48 n n C12 H4 6ST sing 49 n n C12 H5 6ST sing 50 n n C15 H6 6ST sing 51 n n C18 H7 6ST sing 52 n n C21 H8 6ST sing 53 n n C23 H9 6ST sing 54 n n C33 H10 6ST sing 55 n n C36 H11 6ST sing 56 n n C37 H12 6ST sing 57 n n C40 H13 6ST sing 58 n n C40 H14 6ST sing 59 n n O1 H15 6ST sing 60 n n C9 H16 6ST sing 61 n n C10 H17 6ST sing 62 n n C13 H18 6ST sing 63 n n N17 H19 6ST sing 64 n n C22 H21 6ST sing 65 n n N31 H22 6ST sing 66 n n C41 H24 6ST sing 67 n n C42 H25 6ST sing 68 n n C42 H26 6ST sing 69 n n C43 H27 6ST sing 70 n n C43 H28 6ST sing 71 n n # _atom_sites.entry_id 5LAZ _atom_sites.fract_transf_matrix[1][1] 0.017909 _atom_sites.fract_transf_matrix[1][2] 0.01034 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6ST A 1 201 1 6ST INX . C 3 ZN A 1 202 1 ZN ZN . D 4 SO4 A 1 203 2 SO4 SO4 . E 5 HOH A 1 301 29 HOH HOH . E 5 HOH A 2 302 38 HOH HOH . E 5 HOH A 3 303 33 HOH HOH . E 5 HOH A 4 304 2 HOH HOH . E 5 HOH A 5 305 31 HOH HOH . E 5 HOH A 6 306 8 HOH HOH . E 5 HOH A 7 307 25 HOH HOH . E 5 HOH A 8 308 10 HOH HOH . E 5 HOH A 9 309 28 HOH HOH . E 5 HOH A 10 310 12 HOH HOH . E 5 HOH A 11 311 30 HOH HOH . E 5 HOH A 12 312 14 HOH HOH . E 5 HOH A 13 313 7 HOH HOH . E 5 HOH A 14 314 11 HOH HOH . E 5 HOH A 15 315 3 HOH HOH . E 5 HOH A 16 316 35 HOH HOH . E 5 HOH A 17 317 21 HOH HOH . E 5 HOH A 18 318 37 HOH HOH . E 5 HOH A 19 319 6 HOH HOH . E 5 HOH A 20 320 13 HOH HOH . E 5 HOH A 21 321 22 HOH HOH . E 5 HOH A 22 322 4 HOH HOH . E 5 HOH A 23 323 15 HOH HOH . E 5 HOH A 24 324 26 HOH HOH . E 5 HOH A 25 325 32 HOH HOH . E 5 HOH A 26 326 19 HOH HOH . E 5 HOH A 27 327 18 HOH HOH . E 5 HOH A 28 328 9 HOH HOH . E 5 HOH A 29 329 39 HOH HOH . E 5 HOH A 30 330 16 HOH HOH . E 5 HOH A 31 331 1 HOH HOH . E 5 HOH A 32 332 17 HOH HOH . E 5 HOH A 33 333 5 HOH HOH . E 5 HOH A 34 334 24 HOH HOH . E 5 HOH A 35 335 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 6ST . . . B 2 -12.718 8.306 -6.848 1 15.95 ? C2 6ST 201 A 1 HETATM 2 C C4 6ST . . . B 2 -11.893 8.758 -5.718 1 15.03 ? C4 6ST 201 A 1 HETATM 3 C C5 6ST . . . B 2 -12.518 9.086 -4.508 1 11.63 ? C5 6ST 201 A 1 HETATM 4 C C6 6ST . . . B 2 -11.775 9.535 -3.472 1 13.75 ? C6 6ST 201 A 1 HETATM 5 C C7 6ST . . . B 2 -10.406 9.677 -3.611 1 13.79 ? C7 6ST 201 A 1 HETATM 6 C C8 6ST . . . B 2 -9.786 9.357 -4.807 1 16.62 ? C8 6ST 201 A 1 HETATM 7 C C12 6ST . . . B 2 -10.217 10.143 -1.089 1 14.99 ? C12 6ST 201 A 1 HETATM 8 C C15 6ST . . . B 2 -7.8 9.58 -0.966 1 14.81 ? C15 6ST 201 A 1 HETATM 9 C C18 6ST . . . B 2 -6.764 10.733 -0.959 1 13.95 ? C18 6ST 201 A 1 HETATM 10 C C21 6ST . . . B 2 -4.786 9.088 -0.602 1 14.54 ? C21 6ST 201 A 1 HETATM 11 C C23 6ST . . . B 2 -2.685 9.528 -1.619 1 17.33 ? C23 6ST 201 A 1 HETATM 12 C C24 6ST . . . B 2 -3.181 10.688 -2.178 1 15.27 ? C24 6ST 201 A 1 HETATM 13 C C32 6ST . . . B 2 -5.57 12.957 1.442 1 12.96 ? C32 6ST 201 A 1 HETATM 14 C C33 6ST . . . B 2 -4.895 14.151 1.661 1 13.71 ? C33 6ST 201 A 1 HETATM 15 C C34 6ST . . . B 2 -5.089 15.248 0.839 1 14.94 ? C34 6ST 201 A 1 HETATM 16 C C36 6ST . . . B 2 -5.953 15.17 -0.212 1 13.85 ? C36 6ST 201 A 1 HETATM 17 C C37 6ST . . . B 2 -6.659 13.989 -0.456 1 13.18 ? C37 6ST 201 A 1 HETATM 18 C C38 6ST . . . B 2 -6.501 12.882 0.368 1 13.69 ? C38 6ST 201 A 1 HETATM 19 C C40 6ST . . . B 2 -9.164 11.956 1.614 1 16.54 ? C40 6ST 201 A 1 HETATM 20 O O1 6ST . . . B 2 -14.003 7.997 -6.649 1 20.97 ? O1 6ST 201 A 1 HETATM 21 O O3 6ST . . . B 2 -12.212 8.216 -7.945 1 20.76 ? O3 6ST 201 A 1 HETATM 22 C C9 6ST . . . B 2 -10.518 8.921 -5.872 1 14.69 ? C9 6ST 201 A 1 HETATM 23 C C10 6ST . . . B 2 -9.537 10.149 -2.491 1 15.24 ? C10 6ST 201 A 1 HETATM 24 C C13 6ST . . . B 2 -8.966 10.165 -0.124 1 14.6 ? C13 6ST 201 A 1 HETATM 25 N N17 6ST . . . B 2 -8.366 9.249 -2.302 1 14.46 ? N17 6ST 201 A 1 HETATM 26 C C20 6ST . . . B 2 -5.321 10.268 -1.165 1 14.47 ? C20 6ST 201 A 1 HETATM 27 C C22 6ST . . . B 2 -3.501 8.709 -0.854 1 17.41 ? C22 6ST 201 A 1 HETATM 28 CL CL2 6ST . . . B 2 -2.161 11.745 -3.159 1 17.4 ? CL2 6ST 201 A 1 HETATM 29 C C26 6ST . . . B 2 -4.474 11.076 -1.896 1 14.12 ? C26 6ST 201 A 1 HETATM 30 F F27 6ST . . . B 2 -4.901 12.227 -2.439 1 14 ? F27 6ST 201 A 1 HETATM 31 C C28 6ST . . . B 2 -7.059 11.492 0.366 1 13.76 ? C28 6ST 201 A 1 HETATM 32 C C29 6ST . . . B 2 -6.426 10.826 1.58 1 13.3 ? C29 6ST 201 A 1 HETATM 33 O O30 6ST . . . B 2 -6.63 9.674 1.941 1 16.08 ? O30 6ST 201 A 1 HETATM 34 N N31 6ST . . . B 2 -5.578 11.746 2.128 1 15.06 ? N31 6ST 201 A 1 HETATM 35 CL CL3 6ST . . . B 2 -4.239 16.689 1.134 1 18.6 ? CL3 6ST 201 A 1 HETATM 36 N N39 6ST . . . B 2 -8.573 11.496 0.308 1 14.45 ? N39 6ST 201 A 1 HETATM 37 C C41 6ST . . . B 2 -10.529 12.606 1.385 1 19.27 ? C41 6ST 201 A 1 HETATM 38 C C42 6ST . . . B 2 -10.855 13.673 2.415 1 23.49 ? C42 6ST 201 A 1 HETATM 39 C C43 6ST . . . B 2 -10.549 14.067 0.956 1 22.61 ? C43 6ST 201 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 56 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 745 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 39 #