data_5LB6
#
_model_server_result.job_id            LlMFWWntHLsyJgTQXORYqQ 
_model_server_result.datetime_utc      '2024-11-04 20:33:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lb6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    5LB6 
#
_exptl.entry_id    5LB6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5LB6 
_cell.length_a            111.159 
_cell.length_b            111.159 
_cell.length_c            40.38 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LB6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 27 A CYS 201 1_555 A SG CYS 34 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc4 B MN MN . A MN 501 1_555 C O13 UN9 . A UN9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc5 B MN MN . A MN 501 1_555 C N8 UN9 . A UN9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc6 B MN MN . A MN 501 1_555 F O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5LB6 
_atom_sites.fract_transf_matrix[1][1]    0.008996 
_atom_sites.fract_transf_matrix[1][2]    0.005194 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010388 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024765 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 501 501 MN MN . 
C 3 UN9 A 1 502 601 UN9 UN9 . 
D 4 SO4 A 1 503 701 SO4 SO4 . 
E 5 GOL A 1 504 801 GOL GOL . 
F 6 HOH A 1 601 46 HOH HOH . 
F 6 HOH A 2 602 129 HOH HOH . 
F 6 HOH A 3 603 149 HOH HOH . 
F 6 HOH A 4 604 82 HOH HOH . 
F 6 HOH A 5 605 109 HOH HOH . 
F 6 HOH A 6 606 110 HOH HOH . 
F 6 HOH A 7 607 168 HOH HOH . 
F 6 HOH A 8 608 70 HOH HOH . 
F 6 HOH A 9 609 99 HOH HOH . 
F 6 HOH A 10 610 119 HOH HOH . 
F 6 HOH A 11 611 45 HOH HOH . 
F 6 HOH A 12 612 11 HOH HOH . 
F 6 HOH A 13 613 24 HOH HOH . 
F 6 HOH A 14 614 66 HOH HOH . 
F 6 HOH A 15 615 34 HOH HOH . 
F 6 HOH A 16 616 74 HOH HOH . 
F 6 HOH A 17 617 10 HOH HOH . 
F 6 HOH A 18 618 93 HOH HOH . 
F 6 HOH A 19 619 38 HOH HOH . 
F 6 HOH A 20 620 17 HOH HOH . 
F 6 HOH A 21 621 156 HOH HOH . 
F 6 HOH A 22 622 16 HOH HOH . 
F 6 HOH A 23 623 1 HOH HOH . 
F 6 HOH A 24 624 69 HOH HOH . 
F 6 HOH A 25 625 12 HOH HOH . 
F 6 HOH A 26 626 8 HOH HOH . 
F 6 HOH A 27 627 51 HOH HOH . 
F 6 HOH A 28 628 98 HOH HOH . 
F 6 HOH A 29 629 3 HOH HOH . 
F 6 HOH A 30 630 42 HOH HOH . 
F 6 HOH A 31 631 54 HOH HOH . 
F 6 HOH A 32 632 107 HOH HOH . 
F 6 HOH A 33 633 135 HOH HOH . 
F 6 HOH A 34 634 20 HOH HOH . 
F 6 HOH A 35 635 2 HOH HOH . 
F 6 HOH A 36 636 21 HOH HOH . 
F 6 HOH A 37 637 76 HOH HOH . 
F 6 HOH A 38 638 87 HOH HOH . 
F 6 HOH A 39 639 155 HOH HOH . 
F 6 HOH A 40 640 95 HOH HOH . 
F 6 HOH A 41 641 59 HOH HOH . 
F 6 HOH A 42 642 63 HOH HOH . 
F 6 HOH A 43 643 73 HOH HOH . 
F 6 HOH A 44 644 55 HOH HOH . 
F 6 HOH A 45 645 58 HOH HOH . 
F 6 HOH A 46 646 103 HOH HOH . 
F 6 HOH A 47 647 108 HOH HOH . 
F 6 HOH A 48 648 96 HOH HOH . 
F 6 HOH A 49 649 132 HOH HOH . 
F 6 HOH A 50 650 53 HOH HOH . 
F 6 HOH A 51 651 56 HOH HOH . 
F 6 HOH A 52 652 19 HOH HOH . 
F 6 HOH A 53 653 7 HOH HOH . 
F 6 HOH A 54 654 41 HOH HOH . 
F 6 HOH A 55 655 18 HOH HOH . 
F 6 HOH A 56 656 39 HOH HOH . 
F 6 HOH A 57 657 81 HOH HOH . 
F 6 HOH A 58 658 134 HOH HOH . 
F 6 HOH A 59 659 125 HOH HOH . 
F 6 HOH A 60 660 123 HOH HOH . 
F 6 HOH A 61 661 161 HOH HOH . 
F 6 HOH A 62 662 23 HOH HOH . 
F 6 HOH A 63 663 14 HOH HOH . 
F 6 HOH A 64 664 26 HOH HOH . 
F 6 HOH A 65 665 75 HOH HOH . 
F 6 HOH A 66 666 83 HOH HOH . 
F 6 HOH A 67 667 136 HOH HOH . 
F 6 HOH A 68 668 68 HOH HOH . 
F 6 HOH A 69 669 64 HOH HOH . 
F 6 HOH A 70 670 4 HOH HOH . 
F 6 HOH A 71 671 22 HOH HOH . 
F 6 HOH A 72 672 101 HOH HOH . 
F 6 HOH A 73 673 91 HOH HOH . 
F 6 HOH A 74 674 60 HOH HOH . 
F 6 HOH A 75 675 48 HOH HOH . 
F 6 HOH A 76 676 15 HOH HOH . 
F 6 HOH A 77 677 175 HOH HOH . 
F 6 HOH A 78 678 25 HOH HOH . 
F 6 HOH A 79 679 13 HOH HOH . 
F 6 HOH A 80 680 44 HOH HOH . 
F 6 HOH A 81 681 28 HOH HOH . 
F 6 HOH A 82 682 86 HOH HOH . 
F 6 HOH A 83 683 9 HOH HOH . 
F 6 HOH A 84 684 71 HOH HOH . 
F 6 HOH A 85 685 166 HOH HOH . 
F 6 HOH A 86 686 36 HOH HOH . 
F 6 HOH A 87 687 30 HOH HOH . 
F 6 HOH A 88 688 49 HOH HOH . 
F 6 HOH A 89 689 133 HOH HOH . 
F 6 HOH A 90 690 84 HOH HOH . 
F 6 HOH A 91 691 35 HOH HOH . 
F 6 HOH A 92 692 47 HOH HOH . 
F 6 HOH A 93 693 92 HOH HOH . 
F 6 HOH A 94 694 6 HOH HOH . 
F 6 HOH A 95 695 31 HOH HOH . 
F 6 HOH A 96 696 5 HOH HOH . 
F 6 HOH A 97 697 43 HOH HOH . 
F 6 HOH A 98 698 94 HOH HOH . 
F 6 HOH A 99 699 154 HOH HOH . 
F 6 HOH A 100 700 131 HOH HOH . 
F 6 HOH A 101 701 88 HOH HOH . 
F 6 HOH A 102 702 122 HOH HOH . 
F 6 HOH A 103 703 89 HOH HOH . 
F 6 HOH A 104 704 124 HOH HOH . 
F 6 HOH A 105 705 29 HOH HOH . 
F 6 HOH A 106 706 90 HOH HOH . 
F 6 HOH A 107 707 143 HOH HOH . 
F 6 HOH A 108 708 140 HOH HOH . 
F 6 HOH A 109 709 65 HOH HOH . 
F 6 HOH A 110 710 50 HOH HOH . 
F 6 HOH A 111 711 138 HOH HOH . 
F 6 HOH A 112 712 27 HOH HOH . 
F 6 HOH A 113 713 159 HOH HOH . 
F 6 HOH A 114 714 113 HOH HOH . 
F 6 HOH A 115 715 120 HOH HOH . 
F 6 HOH A 116 716 85 HOH HOH . 
F 6 HOH A 117 717 67 HOH HOH . 
F 6 HOH A 118 718 72 HOH HOH . 
F 6 HOH A 119 719 147 HOH HOH . 
F 6 HOH A 120 720 40 HOH HOH . 
F 6 HOH A 121 721 118 HOH HOH . 
F 6 HOH A 122 722 158 HOH HOH . 
F 6 HOH A 123 723 141 HOH HOH . 
F 6 HOH A 124 724 114 HOH HOH . 
F 6 HOH A 125 725 78 HOH HOH . 
F 6 HOH A 126 726 79 HOH HOH . 
F 6 HOH A 127 727 102 HOH HOH . 
F 6 HOH A 128 728 146 HOH HOH . 
F 6 HOH A 129 729 152 HOH HOH . 
F 6 HOH A 130 730 164 HOH HOH . 
F 6 HOH A 131 731 139 HOH HOH . 
F 6 HOH A 132 732 157 HOH HOH . 
F 6 HOH A 133 733 153 HOH HOH . 
F 6 HOH A 134 734 142 HOH HOH . 
F 6 HOH A 135 735 116 HOH HOH . 
F 6 HOH A 136 736 105 HOH HOH . 
F 6 HOH A 137 737 77 HOH HOH . 
F 6 HOH A 138 738 145 HOH HOH . 
F 6 HOH A 139 739 33 HOH HOH . 
F 6 HOH A 140 740 151 HOH HOH . 
F 6 HOH A 141 741 97 HOH HOH . 
F 6 HOH A 142 742 104 HOH HOH . 
F 6 HOH A 143 743 137 HOH HOH . 
F 6 HOH A 144 744 112 HOH HOH . 
F 6 HOH A 145 745 111 HOH HOH . 
F 6 HOH A 146 746 163 HOH HOH . 
F 6 HOH A 147 747 115 HOH HOH . 
F 6 HOH A 148 748 150 HOH HOH . 
F 6 HOH A 149 749 165 HOH HOH . 
F 6 HOH A 150 750 52 HOH HOH . 
F 6 HOH A 151 751 62 HOH HOH . 
F 6 HOH A 152 752 100 HOH HOH . 
F 6 HOH A 153 753 171 HOH HOH . 
F 6 HOH A 154 754 130 HOH HOH . 
F 6 HOH A 155 755 32 HOH HOH . 
F 6 HOH A 156 756 126 HOH HOH . 
F 6 HOH A 157 757 172 HOH HOH . 
F 6 HOH A 158 758 117 HOH HOH . 
F 6 HOH A 159 759 121 HOH HOH . 
F 6 HOH A 160 760 106 HOH HOH . 
F 6 HOH A 161 761 128 HOH HOH . 
F 6 HOH A 162 762 61 HOH HOH . 
F 6 HOH A 163 763 148 HOH HOH . 
F 6 HOH A 164 764 127 HOH HOH . 
F 6 HOH A 165 765 80 HOH HOH . 
F 6 HOH A 166 766 169 HOH HOH . 
F 6 HOH A 167 767 37 HOH HOH . 
F 6 HOH A 168 768 144 HOH HOH . 
F 6 HOH A 169 769 170 HOH HOH . 
F 6 HOH A 170 770 57 HOH HOH . 
F 6 HOH A 171 771 173 HOH HOH . 
F 6 HOH A 172 772 162 HOH HOH . 
F 6 HOH A 173 773 174 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 56.876 146.373 -13.381 1 99.63 ? C1 GOL 504 A 1 
HETATM 2 O O1 GOL . . . E 5 55.479 146.521 -13.493 1 98.12 ? O1 GOL 504 A 1 
HETATM 3 C C2 GOL . . . E 5 57.36 145.378 -14.416 1 100.98 ? C2 GOL 504 A 1 
HETATM 4 O O2 GOL . . . E 5 56.538 145.421 -15.558 1 119.19 ? O2 GOL 504 A 1 
HETATM 5 C C3 GOL . . . E 5 58.801 145.628 -14.82 1 83.57 ? C3 GOL 504 A 1 
HETATM 6 O O3 GOL . . . E 5 59.2 144.688 -15.799 1 72.9 ? O3 GOL 504 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#