data_5LBB # _model_server_result.job_id 1_4fFiJvcdmgW4624YBsLQ _model_server_result.datetime_utc '2024-11-04 20:32:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5LBB # _exptl.entry_id 5LBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LBB _cell.length_a 110.199 _cell.length_b 110.199 _cell.length_c 39.717 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -55.0995 -95.435133 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 55.0995 -95.435133 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 201 1_555 A SG CYS 34 A CYS 208 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.13 ? metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc4 B MN MN . A MN 501 1_555 C N8 UN9 . A UN9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc5 B MN MN . A MN 501 1_555 C O13 UN9 . A UN9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc6 B MN MN . A MN 501 1_555 E O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LBB _atom_sites.fract_transf_matrix[1][1] 0.009074 _atom_sites.fract_transf_matrix[1][2] 0.005239 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 501 MN MN . C 3 UN9 A 1 502 601 UN9 UN9 . D 4 BCT A 1 503 701 BCT BCT . E 5 HOH A 1 601 100 HOH HOH . E 5 HOH A 2 602 93 HOH HOH . E 5 HOH A 3 603 113 HOH HOH . E 5 HOH A 4 604 75 HOH HOH . E 5 HOH A 5 605 83 HOH HOH . E 5 HOH A 6 606 68 HOH HOH . E 5 HOH A 7 607 38 HOH HOH . E 5 HOH A 8 608 89 HOH HOH . E 5 HOH A 9 609 17 HOH HOH . E 5 HOH A 10 610 88 HOH HOH . E 5 HOH A 11 611 98 HOH HOH . E 5 HOH A 12 612 126 HOH HOH . E 5 HOH A 13 613 27 HOH HOH . E 5 HOH A 14 614 78 HOH HOH . E 5 HOH A 15 615 111 HOH HOH . E 5 HOH A 16 616 19 HOH HOH . E 5 HOH A 17 617 99 HOH HOH . E 5 HOH A 18 618 16 HOH HOH . E 5 HOH A 19 619 33 HOH HOH . E 5 HOH A 20 620 48 HOH HOH . E 5 HOH A 21 621 12 HOH HOH . E 5 HOH A 22 622 74 HOH HOH . E 5 HOH A 23 623 22 HOH HOH . E 5 HOH A 24 624 114 HOH HOH . E 5 HOH A 25 625 50 HOH HOH . E 5 HOH A 26 626 60 HOH HOH . E 5 HOH A 27 627 87 HOH HOH . E 5 HOH A 28 628 32 HOH HOH . E 5 HOH A 29 629 39 HOH HOH . E 5 HOH A 30 630 44 HOH HOH . E 5 HOH A 31 631 20 HOH HOH . E 5 HOH A 32 632 54 HOH HOH . E 5 HOH A 33 633 42 HOH HOH . E 5 HOH A 34 634 37 HOH HOH . E 5 HOH A 35 635 2 HOH HOH . E 5 HOH A 36 636 1 HOH HOH . E 5 HOH A 37 637 122 HOH HOH . E 5 HOH A 38 638 47 HOH HOH . E 5 HOH A 39 639 18 HOH HOH . E 5 HOH A 40 640 23 HOH HOH . E 5 HOH A 41 641 72 HOH HOH . E 5 HOH A 42 642 92 HOH HOH . E 5 HOH A 43 643 86 HOH HOH . E 5 HOH A 44 644 10 HOH HOH . E 5 HOH A 45 645 52 HOH HOH . E 5 HOH A 46 646 80 HOH HOH . E 5 HOH A 47 647 55 HOH HOH . E 5 HOH A 48 648 77 HOH HOH . E 5 HOH A 49 649 14 HOH HOH . E 5 HOH A 50 650 36 HOH HOH . E 5 HOH A 51 651 56 HOH HOH . E 5 HOH A 52 652 76 HOH HOH . E 5 HOH A 53 653 115 HOH HOH . E 5 HOH A 54 654 7 HOH HOH . E 5 HOH A 55 655 13 HOH HOH . E 5 HOH A 56 656 58 HOH HOH . E 5 HOH A 57 657 24 HOH HOH . E 5 HOH A 58 658 53 HOH HOH . E 5 HOH A 59 659 26 HOH HOH . E 5 HOH A 60 660 82 HOH HOH . E 5 HOH A 61 661 73 HOH HOH . E 5 HOH A 62 662 70 HOH HOH . E 5 HOH A 63 663 15 HOH HOH . E 5 HOH A 64 664 40 HOH HOH . E 5 HOH A 65 665 21 HOH HOH . E 5 HOH A 66 666 9 HOH HOH . E 5 HOH A 67 667 109 HOH HOH . E 5 HOH A 68 668 61 HOH HOH . E 5 HOH A 69 669 67 HOH HOH . E 5 HOH A 70 670 29 HOH HOH . E 5 HOH A 71 671 6 HOH HOH . E 5 HOH A 72 672 51 HOH HOH . E 5 HOH A 73 673 104 HOH HOH . E 5 HOH A 74 674 3 HOH HOH . E 5 HOH A 75 675 5 HOH HOH . E 5 HOH A 76 676 43 HOH HOH . E 5 HOH A 77 677 4 HOH HOH . E 5 HOH A 78 678 90 HOH HOH . E 5 HOH A 79 679 30 HOH HOH . E 5 HOH A 80 680 62 HOH HOH . E 5 HOH A 81 681 49 HOH HOH . E 5 HOH A 82 682 63 HOH HOH . E 5 HOH A 83 683 57 HOH HOH . E 5 HOH A 84 684 8 HOH HOH . E 5 HOH A 85 685 110 HOH HOH . E 5 HOH A 86 686 96 HOH HOH . E 5 HOH A 87 687 11 HOH HOH . E 5 HOH A 88 688 31 HOH HOH . E 5 HOH A 89 689 97 HOH HOH . E 5 HOH A 90 690 123 HOH HOH . E 5 HOH A 91 691 81 HOH HOH . E 5 HOH A 92 692 84 HOH HOH . E 5 HOH A 93 693 34 HOH HOH . E 5 HOH A 94 694 105 HOH HOH . E 5 HOH A 95 695 25 HOH HOH . E 5 HOH A 96 696 41 HOH HOH . E 5 HOH A 97 697 85 HOH HOH . E 5 HOH A 98 698 28 HOH HOH . E 5 HOH A 99 699 46 HOH HOH . E 5 HOH A 100 700 94 HOH HOH . E 5 HOH A 101 701 45 HOH HOH . E 5 HOH A 102 702 121 HOH HOH . E 5 HOH A 103 703 107 HOH HOH . E 5 HOH A 104 704 102 HOH HOH . E 5 HOH A 105 705 124 HOH HOH . E 5 HOH A 106 706 79 HOH HOH . E 5 HOH A 107 707 101 HOH HOH . E 5 HOH A 108 708 65 HOH HOH . E 5 HOH A 109 709 35 HOH HOH . E 5 HOH A 110 710 69 HOH HOH . E 5 HOH A 111 711 106 HOH HOH . E 5 HOH A 112 712 59 HOH HOH . E 5 HOH A 113 713 117 HOH HOH . E 5 HOH A 114 714 112 HOH HOH . E 5 HOH A 115 715 91 HOH HOH . E 5 HOH A 116 716 66 HOH HOH . E 5 HOH A 117 717 120 HOH HOH . E 5 HOH A 118 718 64 HOH HOH . E 5 HOH A 119 719 108 HOH HOH . E 5 HOH A 120 720 119 HOH HOH . E 5 HOH A 121 721 71 HOH HOH . E 5 HOH A 122 722 103 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.673 _atom_site.Cartn_y -45.406 _atom_site.Cartn_z 5.802 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #