data_5LBC # _model_server_result.job_id UQBBcHt2hs6Rwg5dGhew7A _model_server_result.datetime_utc '2024-11-13 20:14:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lbc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 5LBC # _exptl.entry_id 5LBC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LBC _cell.length_a 111.006 _cell.length_b 111.006 _cell.length_c 40.283 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LBC _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc4 B MN MN . A MN 501 1_555 D N8 UN9 . A UN9 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc5 B MN MN . A MN 501 1_555 D O13 UN9 . A UN9 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc6 B MN MN . A MN 501 1_555 J O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 133 n n C1 C2 GOL sing 134 n n C1 H11 GOL sing 135 n n C1 H12 GOL sing 136 n n O1 HO1 GOL sing 137 n n C2 O2 GOL sing 138 n n C2 C3 GOL sing 139 n n C2 H2 GOL sing 140 n n O2 HO2 GOL sing 141 n n C3 O3 GOL sing 142 n n C3 H31 GOL sing 143 n n C3 H32 GOL sing 144 n n O3 HO3 GOL sing 145 n n # _atom_sites.entry_id 5LBC _atom_sites.fract_transf_matrix[1][1] 0.009009 _atom_sites.fract_transf_matrix[1][2] 0.005201 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 501 MN MN . C 3 CL A 1 502 502 CL CL . D 4 UN9 A 1 503 601 UN9 UN9 . E 5 SO4 A 1 504 701 SO4 SO4 . F 6 GOL A 1 505 702 GOL GOL . G 6 GOL A 1 506 703 GOL GOL . H 5 SO4 A 1 507 801 SO4 SO4 . I 7 BCT A 1 508 901 BCT BCT . J 8 HOH A 1 601 1135 HOH HOH . J 8 HOH A 2 602 1130 HOH HOH . J 8 HOH A 3 603 1127 HOH HOH . J 8 HOH A 4 604 1100 HOH HOH . J 8 HOH A 5 605 1102 HOH HOH . J 8 HOH A 6 606 1149 HOH HOH . J 8 HOH A 7 607 1148 HOH HOH . J 8 HOH A 8 608 1113 HOH HOH . J 8 HOH A 9 609 1110 HOH HOH . J 8 HOH A 10 610 1147 HOH HOH . J 8 HOH A 11 611 1121 HOH HOH . J 8 HOH A 12 612 1042 HOH HOH . J 8 HOH A 13 613 1094 HOH HOH . J 8 HOH A 14 614 1017 HOH HOH . J 8 HOH A 15 615 1016 HOH HOH . J 8 HOH A 16 616 1087 HOH HOH . J 8 HOH A 17 617 1040 HOH HOH . J 8 HOH A 18 618 1001 HOH HOH . J 8 HOH A 19 619 1090 HOH HOH . J 8 HOH A 20 620 1036 HOH HOH . J 8 HOH A 21 621 1054 HOH HOH . J 8 HOH A 22 622 1009 HOH HOH . J 8 HOH A 23 623 1055 HOH HOH . J 8 HOH A 24 624 1104 HOH HOH . J 8 HOH A 25 625 1050 HOH HOH . J 8 HOH A 26 626 1057 HOH HOH . J 8 HOH A 27 627 1032 HOH HOH . J 8 HOH A 28 628 1035 HOH HOH . J 8 HOH A 29 629 1006 HOH HOH . J 8 HOH A 30 630 1002 HOH HOH . J 8 HOH A 31 631 1010 HOH HOH . J 8 HOH A 32 632 1086 HOH HOH . J 8 HOH A 33 633 1026 HOH HOH . J 8 HOH A 34 634 1071 HOH HOH . J 8 HOH A 35 635 1007 HOH HOH . J 8 HOH A 36 636 1003 HOH HOH . J 8 HOH A 37 637 1089 HOH HOH . J 8 HOH A 38 638 1151 HOH HOH . J 8 HOH A 39 639 1066 HOH HOH . J 8 HOH A 40 640 1111 HOH HOH . J 8 HOH A 41 641 1053 HOH HOH . J 8 HOH A 42 642 1029 HOH HOH . J 8 HOH A 43 643 1038 HOH HOH . J 8 HOH A 44 644 1049 HOH HOH . J 8 HOH A 45 645 1028 HOH HOH . J 8 HOH A 46 646 1073 HOH HOH . J 8 HOH A 47 647 1027 HOH HOH . J 8 HOH A 48 648 1072 HOH HOH . J 8 HOH A 49 649 1012 HOH HOH . J 8 HOH A 50 650 1143 HOH HOH . J 8 HOH A 51 651 1019 HOH HOH . J 8 HOH A 52 652 1116 HOH HOH . J 8 HOH A 53 653 1115 HOH HOH . J 8 HOH A 54 654 1005 HOH HOH . J 8 HOH A 55 655 1136 HOH HOH . J 8 HOH A 56 656 1140 HOH HOH . J 8 HOH A 57 657 1047 HOH HOH . J 8 HOH A 58 658 1105 HOH HOH . J 8 HOH A 59 659 1031 HOH HOH . J 8 HOH A 60 660 1008 HOH HOH . J 8 HOH A 61 661 1112 HOH HOH . J 8 HOH A 62 662 1093 HOH HOH . J 8 HOH A 63 663 1059 HOH HOH . J 8 HOH A 64 664 1015 HOH HOH . J 8 HOH A 65 665 1088 HOH HOH . J 8 HOH A 66 666 1125 HOH HOH . J 8 HOH A 67 667 1137 HOH HOH . J 8 HOH A 68 668 1122 HOH HOH . J 8 HOH A 69 669 1021 HOH HOH . J 8 HOH A 70 670 1139 HOH HOH . J 8 HOH A 71 671 1037 HOH HOH . J 8 HOH A 72 672 1039 HOH HOH . J 8 HOH A 73 673 1092 HOH HOH . J 8 HOH A 74 674 1046 HOH HOH . J 8 HOH A 75 675 1154 HOH HOH . J 8 HOH A 76 676 1120 HOH HOH . J 8 HOH A 77 677 1048 HOH HOH . J 8 HOH A 78 678 1064 HOH HOH . J 8 HOH A 79 679 1132 HOH HOH . J 8 HOH A 80 680 1119 HOH HOH . J 8 HOH A 81 681 1098 HOH HOH . J 8 HOH A 82 682 1145 HOH HOH . J 8 HOH A 83 683 1004 HOH HOH . J 8 HOH A 84 684 1114 HOH HOH . J 8 HOH A 85 685 1133 HOH HOH . J 8 HOH A 86 686 1109 HOH HOH . J 8 HOH A 87 687 1062 HOH HOH . J 8 HOH A 88 688 1097 HOH HOH . J 8 HOH A 89 689 1103 HOH HOH . J 8 HOH A 90 690 1146 HOH HOH . J 8 HOH A 91 691 1118 HOH HOH . J 8 HOH A 92 692 1014 HOH HOH . J 8 HOH A 93 693 1128 HOH HOH . J 8 HOH A 94 694 1099 HOH HOH . J 8 HOH A 95 695 1045 HOH HOH . J 8 HOH A 96 696 1011 HOH HOH . J 8 HOH A 97 697 1067 HOH HOH . J 8 HOH A 98 698 1107 HOH HOH . J 8 HOH A 99 699 1075 HOH HOH . J 8 HOH A 100 700 1123 HOH HOH . J 8 HOH A 101 701 1150 HOH HOH . J 8 HOH A 102 702 1144 HOH HOH . J 8 HOH A 103 703 1081 HOH HOH . J 8 HOH A 104 704 1023 HOH HOH . J 8 HOH A 105 705 1124 HOH HOH . J 8 HOH A 106 706 1095 HOH HOH . J 8 HOH A 107 707 1013 HOH HOH . J 8 HOH A 108 708 1155 HOH HOH . J 8 HOH A 109 709 1018 HOH HOH . J 8 HOH A 110 710 1056 HOH HOH . J 8 HOH A 111 711 1142 HOH HOH . J 8 HOH A 112 712 1141 HOH HOH . J 8 HOH A 113 713 1101 HOH HOH . J 8 HOH A 114 714 1084 HOH HOH . J 8 HOH A 115 715 1126 HOH HOH . J 8 HOH A 116 716 1043 HOH HOH . J 8 HOH A 117 717 1108 HOH HOH . J 8 HOH A 118 718 1159 HOH HOH . J 8 HOH A 119 719 1033 HOH HOH . J 8 HOH A 120 720 1068 HOH HOH . J 8 HOH A 121 721 1070 HOH HOH . J 8 HOH A 122 722 1051 HOH HOH . J 8 HOH A 123 723 1083 HOH HOH . J 8 HOH A 124 724 1153 HOH HOH . J 8 HOH A 125 725 1063 HOH HOH . J 8 HOH A 126 726 1138 HOH HOH . J 8 HOH A 127 727 1157 HOH HOH . J 8 HOH A 128 728 1069 HOH HOH . J 8 HOH A 129 729 1091 HOH HOH . J 8 HOH A 130 730 1156 HOH HOH . J 8 HOH A 131 731 1024 HOH HOH . J 8 HOH A 132 732 1134 HOH HOH . J 8 HOH A 133 733 1074 HOH HOH . J 8 HOH A 134 734 1022 HOH HOH . J 8 HOH A 135 735 1096 HOH HOH . J 8 HOH A 136 736 1082 HOH HOH . J 8 HOH A 137 737 1152 HOH HOH . J 8 HOH A 138 738 1158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 6 142.278 80.099 8.841 1 51.81 ? C1 GOL 505 A 1 HETATM 2 O O1 GOL . . . F 6 141.131 80.227 9.629 1 63.77 ? O1 GOL 505 A 1 HETATM 3 C C2 GOL . . . F 6 143.126 81.34 8.974 1 54.03 ? C2 GOL 505 A 1 HETATM 4 O O2 GOL . . . F 6 143.635 81.363 10.28 1 67.67 ? O2 GOL 505 A 1 HETATM 5 C C3 GOL . . . F 6 144.237 81.245 7.952 1 61.8 ? C3 GOL 505 A 1 HETATM 6 O O3 GOL . . . F 6 145.254 82.179 8.212 1 76.93 ? O3 GOL 505 A 1 HETATM 7 H H11 GOL . . . F 6 142.85 79.231 9.171 1 62.18 ? H11 GOL 505 A 1 HETATM 8 H HO1 GOL . . . F 6 140.551 79.45 9.491 1 76.52 ? HO1 GOL 505 A 1 HETATM 9 H H2 GOL . . . F 6 142.518 82.223 8.778 1 64.83 ? H2 GOL 505 A 1 HETATM 10 H HO2 GOL . . . F 6 144.152 80.547 10.443 1 81.2 ? HO2 GOL 505 A 1 HETATM 11 H H31 GOL . . . F 6 144.657 80.24 7.966 1 74.16 ? H31 GOL 505 A 1 HETATM 12 H H32 GOL . . . F 6 143.829 81.422 6.957 1 74.16 ? H32 GOL 505 A 1 HETATM 13 H HO3 GOL . . . F 6 145.885 82.191 7.462 1 92.32 ? HO3 GOL 505 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #