data_5LBE
#
_model_server_result.job_id            9MRnrng0WenJ1jtRx-U6qQ 
_model_server_result.datetime_utc      '2024-10-22 21:35:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lbe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    5LBE 
#
_exptl.entry_id    5LBE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              61.017 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BICARBONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5LBE 
_cell.length_a            110.45 
_cell.length_b            110.45 
_cell.length_c            39.654 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LBE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 27 A CYS 201 1_555 A SG CYS 34 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc4 B MN MN . A MN 501 1_555 C O13 UN9 . A UN9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc5 B MN MN . A MN 501 1_555 C N8 UN9 . A UN9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc6 B MN MN . A MN 501 1_555 E O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
#
_chem_comp.formula           'C H O3 -1' 
_chem_comp.formula_weight    61.017 
_chem_comp.id                BCT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BICARBONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 BCT doub 70 n n 
C O2 BCT sing 71 n n 
C O3 BCT sing 72 n n 
O3 HO3 BCT sing 73 n n 
#
_atom_sites.entry_id                     5LBE 
_atom_sites.fract_transf_matrix[1][1]    0.009054 
_atom_sites.fract_transf_matrix[1][2]    0.005227 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010455 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025218 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 501 501 MN MN . 
C 3 UN9 A 1 502 601 UN9 UN9 . 
D 4 BCT A 1 503 701 BCT BCT . 
E 5 HOH A 1 601 71 HOH HOH . 
E 5 HOH A 2 602 85 HOH HOH . 
E 5 HOH A 3 603 81 HOH HOH . 
E 5 HOH A 4 604 54 HOH HOH . 
E 5 HOH A 5 605 94 HOH HOH . 
E 5 HOH A 6 606 17 HOH HOH . 
E 5 HOH A 7 607 41 HOH HOH . 
E 5 HOH A 8 608 48 HOH HOH . 
E 5 HOH A 9 609 35 HOH HOH . 
E 5 HOH A 10 610 62 HOH HOH . 
E 5 HOH A 11 611 20 HOH HOH . 
E 5 HOH A 12 612 47 HOH HOH . 
E 5 HOH A 13 613 14 HOH HOH . 
E 5 HOH A 14 614 55 HOH HOH . 
E 5 HOH A 15 615 18 HOH HOH . 
E 5 HOH A 16 616 37 HOH HOH . 
E 5 HOH A 17 617 87 HOH HOH . 
E 5 HOH A 18 618 4 HOH HOH . 
E 5 HOH A 19 619 24 HOH HOH . 
E 5 HOH A 20 620 6 HOH HOH . 
E 5 HOH A 21 621 7 HOH HOH . 
E 5 HOH A 22 622 78 HOH HOH . 
E 5 HOH A 23 623 12 HOH HOH . 
E 5 HOH A 24 624 25 HOH HOH . 
E 5 HOH A 25 625 74 HOH HOH . 
E 5 HOH A 26 626 43 HOH HOH . 
E 5 HOH A 27 627 30 HOH HOH . 
E 5 HOH A 28 628 72 HOH HOH . 
E 5 HOH A 29 629 26 HOH HOH . 
E 5 HOH A 30 630 5 HOH HOH . 
E 5 HOH A 31 631 28 HOH HOH . 
E 5 HOH A 32 632 27 HOH HOH . 
E 5 HOH A 33 633 80 HOH HOH . 
E 5 HOH A 34 634 34 HOH HOH . 
E 5 HOH A 35 635 51 HOH HOH . 
E 5 HOH A 36 636 32 HOH HOH . 
E 5 HOH A 37 637 15 HOH HOH . 
E 5 HOH A 38 638 50 HOH HOH . 
E 5 HOH A 39 639 60 HOH HOH . 
E 5 HOH A 40 640 56 HOH HOH . 
E 5 HOH A 41 641 38 HOH HOH . 
E 5 HOH A 42 642 22 HOH HOH . 
E 5 HOH A 43 643 39 HOH HOH . 
E 5 HOH A 44 644 36 HOH HOH . 
E 5 HOH A 45 645 10 HOH HOH . 
E 5 HOH A 46 646 2 HOH HOH . 
E 5 HOH A 47 647 66 HOH HOH . 
E 5 HOH A 48 648 29 HOH HOH . 
E 5 HOH A 49 649 97 HOH HOH . 
E 5 HOH A 50 650 45 HOH HOH . 
E 5 HOH A 51 651 96 HOH HOH . 
E 5 HOH A 52 652 11 HOH HOH . 
E 5 HOH A 53 653 52 HOH HOH . 
E 5 HOH A 54 654 61 HOH HOH . 
E 5 HOH A 55 655 73 HOH HOH . 
E 5 HOH A 56 656 9 HOH HOH . 
E 5 HOH A 57 657 77 HOH HOH . 
E 5 HOH A 58 658 65 HOH HOH . 
E 5 HOH A 59 659 69 HOH HOH . 
E 5 HOH A 60 660 53 HOH HOH . 
E 5 HOH A 61 661 21 HOH HOH . 
E 5 HOH A 62 662 63 HOH HOH . 
E 5 HOH A 63 663 99 HOH HOH . 
E 5 HOH A 64 664 3 HOH HOH . 
E 5 HOH A 65 665 59 HOH HOH . 
E 5 HOH A 66 666 42 HOH HOH . 
E 5 HOH A 67 667 83 HOH HOH . 
E 5 HOH A 68 668 40 HOH HOH . 
E 5 HOH A 69 669 90 HOH HOH . 
E 5 HOH A 70 670 31 HOH HOH . 
E 5 HOH A 71 671 1 HOH HOH . 
E 5 HOH A 72 672 86 HOH HOH . 
E 5 HOH A 73 673 79 HOH HOH . 
E 5 HOH A 74 674 89 HOH HOH . 
E 5 HOH A 75 675 67 HOH HOH . 
E 5 HOH A 76 676 68 HOH HOH . 
E 5 HOH A 77 677 49 HOH HOH . 
E 5 HOH A 78 678 16 HOH HOH . 
E 5 HOH A 79 679 13 HOH HOH . 
E 5 HOH A 80 680 8 HOH HOH . 
E 5 HOH A 81 681 82 HOH HOH . 
E 5 HOH A 82 682 76 HOH HOH . 
E 5 HOH A 83 683 19 HOH HOH . 
E 5 HOH A 84 684 33 HOH HOH . 
E 5 HOH A 85 685 105 HOH HOH . 
E 5 HOH A 86 686 98 HOH HOH . 
E 5 HOH A 87 687 57 HOH HOH . 
E 5 HOH A 88 688 44 HOH HOH . 
E 5 HOH A 89 689 95 HOH HOH . 
E 5 HOH A 90 690 100 HOH HOH . 
E 5 HOH A 91 691 88 HOH HOH . 
E 5 HOH A 92 692 75 HOH HOH . 
E 5 HOH A 93 693 70 HOH HOH . 
E 5 HOH A 94 694 104 HOH HOH . 
E 5 HOH A 95 695 93 HOH HOH . 
E 5 HOH A 96 696 84 HOH HOH . 
E 5 HOH A 97 697 91 HOH HOH . 
E 5 HOH A 98 698 58 HOH HOH . 
E 5 HOH A 99 699 103 HOH HOH . 
E 5 HOH A 100 700 23 HOH HOH . 
E 5 HOH A 101 701 102 HOH HOH . 
E 5 HOH A 102 702 64 HOH HOH . 
E 5 HOH A 103 703 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C BCT . . . D 4 -43.302 22.51 16.017 1 44.47 ? C BCT 503 A 1 
HETATM 2 O O1 BCT . . . D 4 -42.278 23.166 15.918 1 46.34 ? O1 BCT 503 A 1 
HETATM 3 O O2 BCT . . . D 4 -43.303 21.407 16.548 1 53.18 ? O2 BCT 503 A 1 
HETATM 4 O O3 BCT . . . D 4 -44.406 22.966 15.462 1 62.78 ? O3 BCT 503 A 1 
HETATM 5 H HO3 BCT . . . D 4 -44.948 23.488 16.082 1 75.34 ? HO3 BCT 503 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#