data_5LBF # _model_server_result.job_id dFhMQF_5yChKGHm-3izORw _model_server_result.datetime_utc '2024-10-12 15:29:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5LBF # _exptl.entry_id 5LBF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LBF _cell.length_a 109.766 _cell.length_b 109.766 _cell.length_c 39.545 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 201 1_555 A SG CYS 34 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 B MN MN . A MN 501 1_555 C O13 UN9 . A UN9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc5 B MN MN . A MN 501 1_555 C N8 UN9 . A UN9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc6 B MN MN . A MN 501 1_555 G O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LBF _atom_sites.fract_transf_matrix[1][1] 0.00911 _atom_sites.fract_transf_matrix[1][2] 0.00526 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 501 MN MN . C 3 UN9 A 1 502 601 UN9 UN9 . D 4 SO4 A 1 503 701 SO4 SO4 . E 4 SO4 A 1 504 702 SO4 SO4 . F 5 BCT A 1 505 801 BCT BCT . G 6 HOH A 1 601 1158 HOH HOH . G 6 HOH A 2 602 1152 HOH HOH . G 6 HOH A 3 603 1154 HOH HOH . G 6 HOH A 4 604 1049 HOH HOH . G 6 HOH A 5 605 1170 HOH HOH . G 6 HOH A 6 606 1131 HOH HOH . G 6 HOH A 7 607 1018 HOH HOH . G 6 HOH A 8 608 1130 HOH HOH . G 6 HOH A 9 609 1167 HOH HOH . G 6 HOH A 10 610 1136 HOH HOH . G 6 HOH A 11 611 1157 HOH HOH . G 6 HOH A 12 612 1090 HOH HOH . G 6 HOH A 13 613 1179 HOH HOH . G 6 HOH A 14 614 1023 HOH HOH . G 6 HOH A 15 615 1022 HOH HOH . G 6 HOH A 16 616 1037 HOH HOH . G 6 HOH A 17 617 1081 HOH HOH . G 6 HOH A 18 618 1036 HOH HOH . G 6 HOH A 19 619 1171 HOH HOH . G 6 HOH A 20 620 1058 HOH HOH . G 6 HOH A 21 621 1096 HOH HOH . G 6 HOH A 22 622 1040 HOH HOH . G 6 HOH A 23 623 1019 HOH HOH . G 6 HOH A 24 624 1012 HOH HOH . G 6 HOH A 25 625 1038 HOH HOH . G 6 HOH A 26 626 1156 HOH HOH . G 6 HOH A 27 627 1059 HOH HOH . G 6 HOH A 28 628 1054 HOH HOH . G 6 HOH A 29 629 1050 HOH HOH . G 6 HOH A 30 630 1016 HOH HOH . G 6 HOH A 31 631 1046 HOH HOH . G 6 HOH A 32 632 1085 HOH HOH . G 6 HOH A 33 633 1103 HOH HOH . G 6 HOH A 34 634 1017 HOH HOH . G 6 HOH A 35 635 1032 HOH HOH . G 6 HOH A 36 636 1021 HOH HOH . G 6 HOH A 37 637 1009 HOH HOH . G 6 HOH A 38 638 1002 HOH HOH . G 6 HOH A 39 639 1014 HOH HOH . G 6 HOH A 40 640 1020 HOH HOH . G 6 HOH A 41 641 1101 HOH HOH . G 6 HOH A 42 642 1089 HOH HOH . G 6 HOH A 43 643 1060 HOH HOH . G 6 HOH A 44 644 1063 HOH HOH . G 6 HOH A 45 645 1007 HOH HOH . G 6 HOH A 46 646 1025 HOH HOH . G 6 HOH A 47 647 1001 HOH HOH . G 6 HOH A 48 648 1052 HOH HOH . G 6 HOH A 49 649 1042 HOH HOH . G 6 HOH A 50 650 1031 HOH HOH . G 6 HOH A 51 651 1056 HOH HOH . G 6 HOH A 52 652 1079 HOH HOH . G 6 HOH A 53 653 1070 HOH HOH . G 6 HOH A 54 654 1135 HOH HOH . G 6 HOH A 55 655 1084 HOH HOH . G 6 HOH A 56 656 1010 HOH HOH . G 6 HOH A 57 657 1137 HOH HOH . G 6 HOH A 58 658 1006 HOH HOH . G 6 HOH A 59 659 1028 HOH HOH . G 6 HOH A 60 660 1069 HOH HOH . G 6 HOH A 61 661 1071 HOH HOH . G 6 HOH A 62 662 1013 HOH HOH . G 6 HOH A 63 663 1146 HOH HOH . G 6 HOH A 64 664 1003 HOH HOH . G 6 HOH A 65 665 1091 HOH HOH . G 6 HOH A 66 666 1008 HOH HOH . G 6 HOH A 67 667 1035 HOH HOH . G 6 HOH A 68 668 1075 HOH HOH . G 6 HOH A 69 669 1105 HOH HOH . G 6 HOH A 70 670 1005 HOH HOH . G 6 HOH A 71 671 1078 HOH HOH . G 6 HOH A 72 672 1092 HOH HOH . G 6 HOH A 73 673 1177 HOH HOH . G 6 HOH A 74 674 1004 HOH HOH . G 6 HOH A 75 675 1065 HOH HOH . G 6 HOH A 76 676 1107 HOH HOH . G 6 HOH A 77 677 1176 HOH HOH . G 6 HOH A 78 678 1029 HOH HOH . G 6 HOH A 79 679 1093 HOH HOH . G 6 HOH A 80 680 1122 HOH HOH . G 6 HOH A 81 681 1045 HOH HOH . G 6 HOH A 82 682 1087 HOH HOH . G 6 HOH A 83 683 1134 HOH HOH . G 6 HOH A 84 684 1011 HOH HOH . G 6 HOH A 85 685 1153 HOH HOH . G 6 HOH A 86 686 1053 HOH HOH . G 6 HOH A 87 687 1076 HOH HOH . G 6 HOH A 88 688 1055 HOH HOH . G 6 HOH A 89 689 1033 HOH HOH . G 6 HOH A 90 690 1024 HOH HOH . G 6 HOH A 91 691 1118 HOH HOH . G 6 HOH A 92 692 1175 HOH HOH . G 6 HOH A 93 693 1048 HOH HOH . G 6 HOH A 94 694 1168 HOH HOH . G 6 HOH A 95 695 1097 HOH HOH . G 6 HOH A 96 696 1132 HOH HOH . G 6 HOH A 97 697 1155 HOH HOH . G 6 HOH A 98 698 1067 HOH HOH . G 6 HOH A 99 699 1026 HOH HOH . G 6 HOH A 100 700 1030 HOH HOH . G 6 HOH A 101 701 1086 HOH HOH . G 6 HOH A 102 702 1104 HOH HOH . G 6 HOH A 103 703 1027 HOH HOH . G 6 HOH A 104 704 1043 HOH HOH . G 6 HOH A 105 705 1161 HOH HOH . G 6 HOH A 106 706 1061 HOH HOH . G 6 HOH A 107 707 1072 HOH HOH . G 6 HOH A 108 708 1034 HOH HOH . G 6 HOH A 109 709 1094 HOH HOH . G 6 HOH A 110 710 1174 HOH HOH . G 6 HOH A 111 711 1126 HOH HOH . G 6 HOH A 112 712 1141 HOH HOH . G 6 HOH A 113 713 1147 HOH HOH . G 6 HOH A 114 714 1129 HOH HOH . G 6 HOH A 115 715 1115 HOH HOH . G 6 HOH A 116 716 1064 HOH HOH . G 6 HOH A 117 717 1143 HOH HOH . G 6 HOH A 118 718 1148 HOH HOH . G 6 HOH A 119 719 1108 HOH HOH . G 6 HOH A 120 720 1159 HOH HOH . G 6 HOH A 121 721 1100 HOH HOH . G 6 HOH A 122 722 1162 HOH HOH . G 6 HOH A 123 723 1173 HOH HOH . G 6 HOH A 124 724 1073 HOH HOH . G 6 HOH A 125 725 1133 HOH HOH . G 6 HOH A 126 726 1062 HOH HOH . G 6 HOH A 127 727 1116 HOH HOH . G 6 HOH A 128 728 1169 HOH HOH . G 6 HOH A 129 729 1080 HOH HOH . G 6 HOH A 130 730 1074 HOH HOH . G 6 HOH A 131 731 1039 HOH HOH . G 6 HOH A 132 732 1127 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 38.869 _atom_site.Cartn_y 23.098 _atom_site.Cartn_z -3.741 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #