data_5LBN # _model_server_result.job_id GMQp667b25abTIY8VS6s_g _model_server_result.datetime_utc '2025-03-25 01:26:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lbn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5LBN # _exptl.entry_id 5LBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LBN _cell.length_a 38.301 _cell.length_b 40.555 _cell.length_c 91.317 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5LBN _atom_sites.fract_transf_matrix[1][1] 0.026109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL GOL . C 2 GOL A 1 202 2 GOL GOL . D 3 HOH A 1 301 193 HOH HOH . D 3 HOH A 2 302 159 HOH HOH . D 3 HOH A 3 303 152 HOH HOH . D 3 HOH A 4 304 60 HOH HOH . D 3 HOH A 5 305 156 HOH HOH . D 3 HOH A 6 306 182 HOH HOH . D 3 HOH A 7 307 160 HOH HOH . D 3 HOH A 8 308 105 HOH HOH . D 3 HOH A 9 309 122 HOH HOH . D 3 HOH A 10 310 98 HOH HOH . D 3 HOH A 11 311 146 HOH HOH . D 3 HOH A 12 312 72 HOH HOH . D 3 HOH A 13 313 75 HOH HOH . D 3 HOH A 14 314 178 HOH HOH . D 3 HOH A 15 315 123 HOH HOH . D 3 HOH A 16 316 11 HOH HOH . D 3 HOH A 17 317 37 HOH HOH . D 3 HOH A 18 318 118 HOH HOH . D 3 HOH A 19 319 177 HOH HOH . D 3 HOH A 20 320 25 HOH HOH . D 3 HOH A 21 321 97 HOH HOH . D 3 HOH A 22 322 76 HOH HOH . D 3 HOH A 23 323 102 HOH HOH . D 3 HOH A 24 324 103 HOH HOH . D 3 HOH A 25 325 21 HOH HOH . D 3 HOH A 26 326 191 HOH HOH . D 3 HOH A 27 327 15 HOH HOH . D 3 HOH A 28 328 14 HOH HOH . D 3 HOH A 29 329 22 HOH HOH . D 3 HOH A 30 330 56 HOH HOH . D 3 HOH A 31 331 18 HOH HOH . D 3 HOH A 32 332 31 HOH HOH . D 3 HOH A 33 333 8 HOH HOH . D 3 HOH A 34 334 124 HOH HOH . D 3 HOH A 35 335 181 HOH HOH . D 3 HOH A 36 336 104 HOH HOH . D 3 HOH A 37 337 67 HOH HOH . D 3 HOH A 38 338 6 HOH HOH . D 3 HOH A 39 339 106 HOH HOH . D 3 HOH A 40 340 189 HOH HOH . D 3 HOH A 41 341 10 HOH HOH . D 3 HOH A 42 342 73 HOH HOH . D 3 HOH A 43 343 1 HOH HOH . D 3 HOH A 44 344 23 HOH HOH . D 3 HOH A 45 345 16 HOH HOH . D 3 HOH A 46 346 151 HOH HOH . D 3 HOH A 47 347 90 HOH HOH . D 3 HOH A 48 348 62 HOH HOH . D 3 HOH A 49 349 39 HOH HOH . D 3 HOH A 50 350 12 HOH HOH . D 3 HOH A 51 351 47 HOH HOH . D 3 HOH A 52 352 185 HOH HOH . D 3 HOH A 53 353 195 HOH HOH . D 3 HOH A 54 354 100 HOH HOH . D 3 HOH A 55 355 79 HOH HOH . D 3 HOH A 56 356 54 HOH HOH . D 3 HOH A 57 357 2 HOH HOH . D 3 HOH A 58 358 13 HOH HOH . D 3 HOH A 59 359 61 HOH HOH . D 3 HOH A 60 360 113 HOH HOH . D 3 HOH A 61 361 24 HOH HOH . D 3 HOH A 62 362 46 HOH HOH . D 3 HOH A 63 363 94 HOH HOH . D 3 HOH A 64 364 17 HOH HOH . D 3 HOH A 65 365 7 HOH HOH . D 3 HOH A 66 366 108 HOH HOH . D 3 HOH A 67 367 45 HOH HOH . D 3 HOH A 68 368 28 HOH HOH . D 3 HOH A 69 369 78 HOH HOH . D 3 HOH A 70 370 170 HOH HOH . D 3 HOH A 71 371 141 HOH HOH . D 3 HOH A 72 372 168 HOH HOH . D 3 HOH A 73 373 42 HOH HOH . D 3 HOH A 74 374 68 HOH HOH . D 3 HOH A 75 375 35 HOH HOH . D 3 HOH A 76 376 63 HOH HOH . D 3 HOH A 77 377 9 HOH HOH . D 3 HOH A 78 378 139 HOH HOH . D 3 HOH A 79 379 80 HOH HOH . D 3 HOH A 80 380 70 HOH HOH . D 3 HOH A 81 381 65 HOH HOH . D 3 HOH A 82 382 84 HOH HOH . D 3 HOH A 83 383 194 HOH HOH . D 3 HOH A 84 384 110 HOH HOH . D 3 HOH A 85 385 50 HOH HOH . D 3 HOH A 86 386 27 HOH HOH . D 3 HOH A 87 387 71 HOH HOH . D 3 HOH A 88 388 95 HOH HOH . D 3 HOH A 89 389 3 HOH HOH . D 3 HOH A 90 390 117 HOH HOH . D 3 HOH A 91 391 109 HOH HOH . D 3 HOH A 92 392 55 HOH HOH . D 3 HOH A 93 393 162 HOH HOH . D 3 HOH A 94 394 77 HOH HOH . D 3 HOH A 95 395 34 HOH HOH . D 3 HOH A 96 396 184 HOH HOH . D 3 HOH A 97 397 138 HOH HOH . D 3 HOH A 98 398 115 HOH HOH . D 3 HOH A 99 399 52 HOH HOH . D 3 HOH A 100 400 180 HOH HOH . D 3 HOH A 101 401 29 HOH HOH . D 3 HOH A 102 402 158 HOH HOH . D 3 HOH A 103 403 93 HOH HOH . D 3 HOH A 104 404 112 HOH HOH . D 3 HOH A 105 405 33 HOH HOH . D 3 HOH A 106 406 140 HOH HOH . D 3 HOH A 107 407 4 HOH HOH . D 3 HOH A 108 408 144 HOH HOH . D 3 HOH A 109 409 99 HOH HOH . D 3 HOH A 110 410 96 HOH HOH . D 3 HOH A 111 411 40 HOH HOH . D 3 HOH A 112 412 58 HOH HOH . D 3 HOH A 113 413 101 HOH HOH . D 3 HOH A 114 414 19 HOH HOH . D 3 HOH A 115 415 20 HOH HOH . D 3 HOH A 116 416 107 HOH HOH . D 3 HOH A 117 417 153 HOH HOH . D 3 HOH A 118 418 143 HOH HOH . D 3 HOH A 119 419 53 HOH HOH . D 3 HOH A 120 420 187 HOH HOH . D 3 HOH A 121 421 81 HOH HOH . D 3 HOH A 122 422 5 HOH HOH . D 3 HOH A 123 423 41 HOH HOH . D 3 HOH A 124 424 59 HOH HOH . D 3 HOH A 125 425 142 HOH HOH . D 3 HOH A 126 426 30 HOH HOH . D 3 HOH A 127 427 92 HOH HOH . D 3 HOH A 128 428 119 HOH HOH . D 3 HOH A 129 429 91 HOH HOH . D 3 HOH A 130 430 121 HOH HOH . D 3 HOH A 131 431 48 HOH HOH . D 3 HOH A 132 432 126 HOH HOH . D 3 HOH A 133 433 36 HOH HOH . D 3 HOH A 134 434 145 HOH HOH . D 3 HOH A 135 435 26 HOH HOH . D 3 HOH A 136 436 38 HOH HOH . D 3 HOH A 137 437 87 HOH HOH . D 3 HOH A 138 438 147 HOH HOH . D 3 HOH A 139 439 157 HOH HOH . D 3 HOH A 140 440 74 HOH HOH . D 3 HOH A 141 441 44 HOH HOH . D 3 HOH A 142 442 111 HOH HOH . D 3 HOH A 143 443 161 HOH HOH . D 3 HOH A 144 444 116 HOH HOH . D 3 HOH A 145 445 120 HOH HOH . D 3 HOH A 146 446 148 HOH HOH . D 3 HOH A 147 447 165 HOH HOH . D 3 HOH A 148 448 85 HOH HOH . D 3 HOH A 149 449 125 HOH HOH . D 3 HOH A 150 450 69 HOH HOH . D 3 HOH A 151 451 174 HOH HOH . D 3 HOH A 152 452 32 HOH HOH . D 3 HOH A 153 453 89 HOH HOH . D 3 HOH A 154 454 167 HOH HOH . D 3 HOH A 155 455 155 HOH HOH . D 3 HOH A 156 456 86 HOH HOH . D 3 HOH A 157 457 179 HOH HOH . D 3 HOH A 158 458 183 HOH HOH . D 3 HOH A 159 459 192 HOH HOH . D 3 HOH A 160 460 130 HOH HOH . D 3 HOH A 161 461 196 HOH HOH . D 3 HOH A 162 462 171 HOH HOH . D 3 HOH A 163 463 64 HOH HOH . D 3 HOH A 164 464 49 HOH HOH . D 3 HOH A 165 465 137 HOH HOH . D 3 HOH A 166 466 188 HOH HOH . D 3 HOH A 167 467 128 HOH HOH . D 3 HOH A 168 468 129 HOH HOH . D 3 HOH A 169 469 136 HOH HOH . D 3 HOH A 170 470 150 HOH HOH . D 3 HOH A 171 471 51 HOH HOH . D 3 HOH A 172 472 166 HOH HOH . D 3 HOH A 173 473 149 HOH HOH . D 3 HOH A 174 474 176 HOH HOH . D 3 HOH A 175 475 135 HOH HOH . D 3 HOH A 176 476 66 HOH HOH . D 3 HOH A 177 477 175 HOH HOH . D 3 HOH A 178 478 154 HOH HOH . D 3 HOH A 179 479 43 HOH HOH . D 3 HOH A 180 480 88 HOH HOH . D 3 HOH A 181 481 134 HOH HOH . D 3 HOH A 182 482 127 HOH HOH . D 3 HOH A 183 483 172 HOH HOH . D 3 HOH A 184 484 131 HOH HOH . D 3 HOH A 185 485 82 HOH HOH . D 3 HOH A 186 486 57 HOH HOH . D 3 HOH A 187 487 186 HOH HOH . D 3 HOH A 188 488 164 HOH HOH . D 3 HOH A 189 489 83 HOH HOH . D 3 HOH A 190 490 132 HOH HOH . D 3 HOH A 191 491 173 HOH HOH . D 3 HOH A 192 492 133 HOH HOH . D 3 HOH A 193 493 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 4.683 0.07 4.327 1 27.51 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 4.876 1.483 4.135 1 29.31 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 3.759 -0.489 3.252 1 29.28 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 2.522 0.222 3.408 1 28.69 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 4.216 -0.307 1.808 1 31.42 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 3.214 -0.938 1.016 1 31.31 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #