data_5LBQ
#
_model_server_result.job_id            GPSYQp9YAmBayPVTjCSo-g 
_model_server_result.datetime_utc      '2024-11-22 09:03:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lbq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    5LBQ 
#
_exptl.entry_id    5LBQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5LBQ 
_cell.length_a            120.13 
_cell.length_b            179.59 
_cell.length_c            234.18 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LBQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 135 n n 
PA O2A FAD sing 136 n n 
PA O5B FAD sing 137 n n 
PA O3P FAD sing 138 n n 
O2A HOA2 FAD sing 139 n n 
O5B C5B FAD sing 140 n n 
C5B C4B FAD sing 141 n n 
C5B H51A FAD sing 142 n n 
C5B H52A FAD sing 143 n n 
C4B O4B FAD sing 144 n n 
C4B C3B FAD sing 145 n n 
C4B H4B FAD sing 146 n n 
O4B C1B FAD sing 147 n n 
C3B O3B FAD sing 148 n n 
C3B C2B FAD sing 149 n n 
C3B H3B FAD sing 150 n n 
O3B HO3A FAD sing 151 n n 
C2B O2B FAD sing 152 n n 
C2B C1B FAD sing 153 n n 
C2B H2B FAD sing 154 n n 
O2B HO2A FAD sing 155 n n 
C1B N9A FAD sing 156 n n 
C1B H1B FAD sing 157 n n 
N9A C8A FAD sing 158 n y 
N9A C4A FAD sing 159 n y 
C8A N7A FAD doub 160 n y 
C8A H8A FAD sing 161 n n 
N7A C5A FAD sing 162 n y 
C5A C6A FAD sing 163 n y 
C5A C4A FAD doub 164 n y 
C6A N6A FAD sing 165 n n 
C6A N1A FAD doub 166 n y 
N6A H61A FAD sing 167 n n 
N6A H62A FAD sing 168 n n 
N1A C2A FAD sing 169 n y 
C2A N3A FAD doub 170 n y 
C2A H2A FAD sing 171 n n 
N3A C4A FAD sing 172 n y 
N1 C2 FAD sing 173 n n 
N1 C10 FAD doub 174 n n 
C2 O2 FAD doub 175 n n 
C2 N3 FAD sing 176 n n 
N3 C4 FAD sing 177 n n 
N3 HN3 FAD sing 178 n n 
C4 O4 FAD doub 179 n n 
C4 C4X FAD sing 180 n n 
C4X N5 FAD doub 181 n n 
C4X C10 FAD sing 182 n n 
N5 C5X FAD sing 183 n n 
C5X C6 FAD doub 184 n y 
C5X C9A FAD sing 185 n y 
C6 C7 FAD sing 186 n y 
C6 H6 FAD sing 187 n n 
C7 C7M FAD sing 188 n n 
C7 C8 FAD doub 189 n y 
C7M HM71 FAD sing 190 n n 
C7M HM72 FAD sing 191 n n 
C7M HM73 FAD sing 192 n n 
C8 C8M FAD sing 193 n n 
C8 C9 FAD sing 194 n y 
C8M HM81 FAD sing 195 n n 
C8M HM82 FAD sing 196 n n 
C8M HM83 FAD sing 197 n n 
C9 C9A FAD doub 198 n y 
C9 H9 FAD sing 199 n n 
C9A N10 FAD sing 200 n n 
N10 C10 FAD sing 201 n n 
N10 C1' FAD sing 202 n n 
C1' C2' FAD sing 203 n n 
C1' "H1'1" FAD sing 204 n n 
C1' "H1'2" FAD sing 205 n n 
C2' O2' FAD sing 206 n n 
C2' C3' FAD sing 207 n n 
C2' H2' FAD sing 208 n n 
O2' HO2' FAD sing 209 n n 
C3' O3' FAD sing 210 n n 
C3' C4' FAD sing 211 n n 
C3' H3' FAD sing 212 n n 
O3' HO3' FAD sing 213 n n 
C4' O4' FAD sing 214 n n 
C4' C5' FAD sing 215 n n 
C4' H4' FAD sing 216 n n 
O4' HO4' FAD sing 217 n n 
C5' O5' FAD sing 218 n n 
C5' "H5'1" FAD sing 219 n n 
C5' "H5'2" FAD sing 220 n n 
O5' P FAD sing 221 n n 
P O1P FAD doub 222 n n 
P O2P FAD sing 223 n n 
P O3P FAD sing 224 n n 
O2P HOP2 FAD sing 225 n n 
#
_atom_sites.entry_id                     5LBQ 
_atom_sites.fract_transf_matrix[1][1]    0.008324 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005568 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00427 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 FAD A 1 901 1837 FAD FAD . 
D 4 767 A 1 902 1 767 767 . 
E 4 767 A 1 903 2 767 767 . 
F 4 767 A 1 904 3 767 767 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 3 -66.703 -21.942 -28.911 1 49.75 ? PA FAD 901 A 1 
HETATM 2 O O1A FAD . . . C 3 -65.909 -21.435 -30.122 1 48.59 ? O1A FAD 901 A 1 
HETATM 3 O O2A FAD . . . C 3 -68.073 -22.656 -28.977 1 49.01 ? O2A FAD 901 A 1 
HETATM 4 O O5B FAD . . . C 3 -66.904 -20.644 -27.972 1 49.73 ? O5B FAD 901 A 1 
HETATM 5 C C5B FAD . . . C 3 -66.019 -19.521 -27.913 1 49.18 ? C5B FAD 901 A 1 
HETATM 6 C C4B FAD . . . C 3 -66.766 -18.207 -27.998 1 48.18 ? C4B FAD 901 A 1 
HETATM 7 O O4B FAD . . . C 3 -65.828 -17.158 -27.796 1 47.56 ? O4B FAD 901 A 1 
HETATM 8 C C3B FAD . . . C 3 -67.356 -18.003 -29.384 1 48.05 ? C3B FAD 901 A 1 
HETATM 9 O O3B FAD . . . C 3 -68.728 -17.619 -29.205 1 48.34 ? O3B FAD 901 A 1 
HETATM 10 C C2B FAD . . . C 3 -66.389 -16.999 -29.999 1 47.69 ? C2B FAD 901 A 1 
HETATM 11 O O2B FAD . . . C 3 -66.915 -16.131 -30.981 1 48.25 ? O2B FAD 901 A 1 
HETATM 12 C C1B FAD . . . C 3 -66.073 -16.173 -28.789 1 47.17 ? C1B FAD 901 A 1 
HETATM 13 N N9A FAD . . . C 3 -64.894 -15.279 -28.87 1 46.1 ? N9A FAD 901 A 1 
HETATM 14 C C8A FAD . . . C 3 -63.687 -15.506 -29.432 1 45.62 ? C8A FAD 901 A 1 
HETATM 15 N N7A FAD . . . C 3 -62.822 -14.471 -29.287 1 45.24 ? N7A FAD 901 A 1 
HETATM 16 C C5A FAD . . . C 3 -63.527 -13.58 -28.586 1 45.82 ? C5A FAD 901 A 1 
HETATM 17 C C6A FAD . . . C 3 -63.242 -12.262 -28.058 1 46.35 ? C6A FAD 901 A 1 
HETATM 18 N N6A FAD . . . C 3 -62.021 -11.743 -28.293 1 47.31 ? N6A FAD 901 A 1 
HETATM 19 N N1A FAD . . . C 3 -64.221 -11.637 -27.366 1 45.83 ? N1A FAD 901 A 1 
HETATM 20 C C2A FAD . . . C 3 -65.442 -12.153 -27.133 1 45.49 ? C2A FAD 901 A 1 
HETATM 21 N N3A FAD . . . C 3 -65.783 -13.359 -27.593 1 45.01 ? N3A FAD 901 A 1 
HETATM 22 C C4A FAD . . . C 3 -64.875 -14.091 -28.3 1 45.66 ? C4A FAD 901 A 1 
HETATM 23 N N1 FAD . . . C 3 -68.156 -31.649 -31.589 1 65.06 ? N1 FAD 901 A 1 
HETATM 24 C C2 FAD . . . C 3 -68.972 -32.771 -31.517 1 66.49 ? C2 FAD 901 A 1 
HETATM 25 O O2 FAD . . . C 3 -69.227 -33.383 -30.432 1 67.34 ? O2 FAD 901 A 1 
HETATM 26 N N3 FAD . . . C 3 -69.553 -33.253 -32.641 1 66.02 ? N3 FAD 901 A 1 
HETATM 27 C C4 FAD . . . C 3 -69.373 -32.678 -33.847 1 64.44 ? C4 FAD 901 A 1 
HETATM 28 O O4 FAD . . . C 3 -69.895 -33.067 -34.903 1 64.4 ? O4 FAD 901 A 1 
HETATM 29 C C4X FAD . . . C 3 -68.521 -31.522 -33.989 1 63.56 ? C4X FAD 901 A 1 
HETATM 30 N N5 FAD . . . C 3 -68.37 -31.02 -35.203 1 63.02 ? N5 FAD 901 A 1 
HETATM 31 C C5X FAD . . . C 3 -67.638 -29.943 -35.393 1 63.26 ? C5X FAD 901 A 1 
HETATM 32 C C6 FAD . . . C 3 -67.564 -29.463 -36.683 1 64.04 ? C6 FAD 901 A 1 
HETATM 33 C C7 FAD . . . C 3 -66.808 -28.341 -36.957 1 64.96 ? C7 FAD 901 A 1 
HETATM 34 C C7M FAD . . . C 3 -66.688 -27.795 -38.35 1 65.52 ? C7M FAD 901 A 1 
HETATM 35 C C8 FAD . . . C 3 -66.091 -27.667 -35.852 1 64.42 ? C8 FAD 901 A 1 
HETATM 36 C C8M FAD . . . C 3 -65.274 -26.451 -36.167 1 64.06 ? C8M FAD 901 A 1 
HETATM 37 C C9 FAD . . . C 3 -66.192 -28.147 -34.551 1 63.63 ? C9 FAD 901 A 1 
HETATM 38 C C9A FAD . . . C 3 -66.946 -29.285 -34.259 1 62.83 ? C9A FAD 901 A 1 
HETATM 39 N N10 FAD . . . C 3 -67.082 -29.839 -32.951 1 61.66 ? N10 FAD 901 A 1 
HETATM 40 C C10 FAD . . . C 3 -67.898 -30.989 -32.776 1 63.58 ? C10 FAD 901 A 1 
HETATM 41 C C1' FAD . . . C 3 -66.435 -29.258 -31.761 1 58.75 ? C1' FAD 901 A 1 
HETATM 42 C C2' FAD . . . C 3 -67.377 -28.367 -30.938 1 56.38 ? C2' FAD 901 A 1 
HETATM 43 O O2' FAD . . . C 3 -68.282 -27.601 -31.739 1 56.55 ? O2' FAD 901 A 1 
HETATM 44 C C3' FAD . . . C 3 -66.629 -27.299 -30.171 1 54.06 ? C3' FAD 901 A 1 
HETATM 45 O O3' FAD . . . C 3 -65.452 -27.875 -29.562 1 53.05 ? O3' FAD 901 A 1 
HETATM 46 C C4' FAD . . . C 3 -67.563 -26.627 -29.146 1 52.73 ? C4' FAD 901 A 1 
HETATM 47 O O4' FAD . . . C 3 -68.646 -25.829 -29.687 1 52.18 ? O4' FAD 901 A 1 
HETATM 48 C C5' FAD . . . C 3 -66.665 -25.769 -28.284 1 51.98 ? C5' FAD 901 A 1 
HETATM 49 O O5' FAD . . . C 3 -67.311 -24.765 -27.545 1 50.63 ? O5' FAD 901 A 1 
HETATM 50 P P FAD . . . C 3 -66.349 -23.749 -26.753 1 50.42 ? P FAD 901 A 1 
HETATM 51 O O1P FAD . . . C 3 -67.453 -23.121 -25.946 1 52.16 ? O1P FAD 901 A 1 
HETATM 52 O O2P FAD . . . C 3 -65.07 -24.285 -26.126 1 48.52 ? O2P FAD 901 A 1 
HETATM 53 O O3P FAD . . . C 3 -65.759 -22.776 -27.911 1 50.35 ? O3P FAD 901 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           53 
#