data_5LBW # _model_server_result.job_id LTxQ5XEfrqk-yV_tLzMTrA _model_server_result.datetime_utc '2024-11-26 02:10:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lbw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 5LBW # _exptl.entry_id 5LBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.361 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description volitinib _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LBW _cell.length_a 57.398 _cell.length_b 81.372 _cell.length_c 106.403 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 174 A HIS 173 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 A ND1 HIS 178 A HIS 177 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc3 A O CYS 223 A CYS 222 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 A SG CYS 223 A CYS 222 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc5 B ND1 HIS 174 B HIS 173 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc6 B ND1 HIS 178 B HIS 177 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc7 B O CYS 223 B CYS 222 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc8 B SG CYS 223 B CYS 222 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? # _chem_comp.formula 'C17 H15 N9' _chem_comp.formula_weight 345.361 _chem_comp.id V0L _chem_comp.mon_nstd_flag . _chem_comp.name volitinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 N1 V0L sing 449 n y C14 C15 V0L doub 450 n y C13 N1 V0L sing 451 n y C13 C8 V0L doub 452 n y C17 C1 V0L sing 453 n n C1 C8 V0L sing 454 n n C1 N3 V0L sing 455 n n N1 C11 V0L sing 456 n y C8 C9 V0L sing 457 n y C15 N2 V0L sing 458 n y N3 N4 V0L sing 459 n y N3 C19 V0L sing 460 n y N4 N5 V0L doub 461 n y C19 N24 V0L doub 462 n y C19 C20 V0L sing 463 n y N5 C20 V0L sing 464 n y N24 C25 V0L sing 465 n y C11 N2 V0L doub 466 n y C11 C10 V0L sing 467 n y C20 N23 V0L doub 468 n y C31 N9 V0L sing 469 n y C31 C27 V0L doub 470 n y C9 C10 V0L doub 471 n y C32 N9 V0L sing 472 n n C25 C27 V0L sing 473 n n C25 C26 V0L doub 474 n y N9 N8 V0L sing 475 n y N23 C26 V0L sing 476 n y C27 C28 V0L sing 477 n y N8 C28 V0L doub 478 n y C1 H1 V0L sing 479 n n C9 H2 V0L sing 480 n n C10 H3 V0L sing 481 n n C13 H4 V0L sing 482 n n C14 H5 V0L sing 483 n n C15 H6 V0L sing 484 n n C17 H7 V0L sing 485 n n C17 H8 V0L sing 486 n n C17 H9 V0L sing 487 n n C26 H10 V0L sing 488 n n C28 H11 V0L sing 489 n n C31 H12 V0L sing 490 n n C32 H13 V0L sing 491 n n C32 H14 V0L sing 492 n n C32 H15 V0L sing 493 n n # _atom_sites.entry_id 5LBW _atom_sites.fract_transf_matrix[1][1] 0.017422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009398 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 231 ZN ZN . D 3 FAD A 1 302 234 FAD FAD . E 4 V0L A 1 303 2 V0L VOL . F 3 FAD B 1 301 233 FAD FAD . G 2 ZN B 1 302 232 ZN ZN . H 4 V0L B 1 303 1 V0L VOL . I 5 HOH A 1 401 6 HOH HOH . I 5 HOH A 2 402 5 HOH HOH . I 5 HOH A 3 403 13 HOH HOH . I 5 HOH A 4 404 30 HOH HOH . I 5 HOH A 5 405 17 HOH HOH . I 5 HOH A 6 406 7 HOH HOH . I 5 HOH A 7 407 32 HOH HOH . I 5 HOH A 8 408 1 HOH HOH . I 5 HOH A 9 409 4 HOH HOH . I 5 HOH A 10 410 19 HOH HOH . I 5 HOH A 11 411 18 HOH HOH . I 5 HOH A 12 412 9 HOH HOH . I 5 HOH A 13 413 33 HOH HOH . I 5 HOH A 14 414 8 HOH HOH . I 5 HOH A 15 415 15 HOH HOH . I 5 HOH A 16 416 3 HOH HOH . I 5 HOH A 17 417 31 HOH HOH . I 5 HOH A 18 418 39 HOH HOH . I 5 HOH A 19 419 29 HOH HOH . J 5 HOH B 1 401 10 HOH HOH . J 5 HOH B 2 402 22 HOH HOH . J 5 HOH B 3 403 23 HOH HOH . J 5 HOH B 4 404 21 HOH HOH . J 5 HOH B 5 405 16 HOH HOH . J 5 HOH B 6 406 11 HOH HOH . J 5 HOH B 7 407 37 HOH HOH . J 5 HOH B 8 408 25 HOH HOH . J 5 HOH B 9 409 26 HOH HOH . J 5 HOH B 10 410 35 HOH HOH . J 5 HOH B 11 411 2 HOH HOH . J 5 HOH B 12 412 12 HOH HOH . J 5 HOH B 13 413 27 HOH HOH . J 5 HOH B 14 414 38 HOH HOH . J 5 HOH B 15 415 20 HOH HOH . J 5 HOH B 16 416 14 HOH HOH . J 5 HOH B 17 417 34 HOH HOH . J 5 HOH B 18 418 24 HOH HOH . J 5 HOH B 19 419 28 HOH HOH . J 5 HOH B 20 420 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 V0L . . . E 4 -27.566 -17.416 15.678 1 59.97 ? C1 V0L 303 A 1 HETATM 2 C C8 V0L . . . E 4 -28.262 -18.687 15.328 1 61.24 ? C8 V0L 303 A 1 HETATM 3 C C9 V0L . . . E 4 -28.427 -19.072 13.996 1 62.28 ? C9 V0L 303 A 1 HETATM 4 C C10 V0L . . . E 4 -29.08 -20.275 13.709 1 62.86 ? C10 V0L 303 A 1 HETATM 5 C C11 V0L . . . E 4 -29.557 -21.073 14.755 1 62.97 ? C11 V0L 303 A 1 HETATM 6 N N1 V0L . . . E 4 -29.384 -20.676 16.034 1 63.26 ? N1 V0L 303 A 1 HETATM 7 C C13 V0L . . . E 4 -28.758 -19.521 16.336 1 62.3 ? C13 V0L 303 A 1 HETATM 8 C C14 V0L . . . E 4 -29.93 -21.621 16.802 1 62.57 ? C14 V0L 303 A 1 HETATM 9 C C15 V0L . . . E 4 -30.457 -22.625 16.035 1 62.78 ? C15 V0L 303 A 1 HETATM 10 N N2 V0L . . . E 4 -30.213 -22.262 14.758 1 63.78 ? N2 V0L 303 A 1 HETATM 11 C C17 V0L . . . E 4 -28.422 -16.232 15.221 1 60.61 ? C17 V0L 303 A 1 HETATM 12 N N3 V0L . . . E 4 -26.189 -17.358 15.08 1 57.79 ? N3 V0L 303 A 1 HETATM 13 C C19 V0L . . . E 4 -25.476 -16.374 14.532 1 55.62 ? C19 V0L 303 A 1 HETATM 14 C C20 V0L . . . E 4 -24.185 -16.983 14.16 1 54.71 ? C20 V0L 303 A 1 HETATM 15 N N5 V0L . . . E 4 -24.172 -18.285 14.499 1 54.77 ? N5 V0L 303 A 1 HETATM 16 N N4 V0L . . . E 4 -25.427 -18.548 15.092 1 56.18 ? N4 V0L 303 A 1 HETATM 17 N N23 V0L . . . E 4 -23.216 -16.253 13.558 1 54.23 ? N23 V0L 303 A 1 HETATM 18 N N24 V0L . . . E 4 -25.665 -15.062 14.262 1 54.04 ? N24 V0L 303 A 1 HETATM 19 C C25 V0L . . . E 4 -24.684 -14.344 13.661 1 52.93 ? C25 V0L 303 A 1 HETATM 20 C C26 V0L . . . E 4 -23.462 -14.949 13.303 1 53.63 ? C26 V0L 303 A 1 HETATM 21 C C27 V0L . . . E 4 -24.955 -12.899 13.395 1 51.77 ? C27 V0L 303 A 1 HETATM 22 C C28 V0L . . . E 4 -25.963 -12.147 13.997 1 50.9 ? C28 V0L 303 A 1 HETATM 23 N N8 V0L . . . E 4 -25.905 -10.884 13.517 1 50.23 ? N8 V0L 303 A 1 HETATM 24 N N9 V0L . . . E 4 -24.847 -10.87 12.604 1 49.91 ? N9 V0L 303 A 1 HETATM 25 C C31 V0L . . . E 4 -24.265 -12.065 12.526 1 50.56 ? C31 V0L 303 A 1 HETATM 26 C C32 V0L . . . E 4 -24.597 -9.562 11.946 1 50.03 ? C32 V0L 303 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #