data_5LBW # _model_server_result.job_id lpVm_cEm-iisJdB2JCd5rw _model_server_result.datetime_utc '2024-10-10 15:23:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lbw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":303}' # _entry.id 5LBW # _exptl.entry_id 5LBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.361 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description volitinib _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LBW _cell.length_a 57.398 _cell.length_b 81.372 _cell.length_c 106.403 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 174 A HIS 173 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 A ND1 HIS 178 A HIS 177 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc3 A O CYS 223 A CYS 222 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 A SG CYS 223 A CYS 222 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc5 B ND1 HIS 174 B HIS 173 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc6 B ND1 HIS 178 B HIS 177 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc7 B O CYS 223 B CYS 222 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc8 B SG CYS 223 B CYS 222 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? # _chem_comp.formula 'C17 H15 N9' _chem_comp.formula_weight 345.361 _chem_comp.id V0L _chem_comp.mon_nstd_flag . _chem_comp.name volitinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 N1 V0L sing 449 n y C14 C15 V0L doub 450 n y C13 N1 V0L sing 451 n y C13 C8 V0L doub 452 n y C17 C1 V0L sing 453 n n C1 C8 V0L sing 454 n n C1 N3 V0L sing 455 n n N1 C11 V0L sing 456 n y C8 C9 V0L sing 457 n y C15 N2 V0L sing 458 n y N3 N4 V0L sing 459 n y N3 C19 V0L sing 460 n y N4 N5 V0L doub 461 n y C19 N24 V0L doub 462 n y C19 C20 V0L sing 463 n y N5 C20 V0L sing 464 n y N24 C25 V0L sing 465 n y C11 N2 V0L doub 466 n y C11 C10 V0L sing 467 n y C20 N23 V0L doub 468 n y C31 N9 V0L sing 469 n y C31 C27 V0L doub 470 n y C9 C10 V0L doub 471 n y C32 N9 V0L sing 472 n n C25 C27 V0L sing 473 n n C25 C26 V0L doub 474 n y N9 N8 V0L sing 475 n y N23 C26 V0L sing 476 n y C27 C28 V0L sing 477 n y N8 C28 V0L doub 478 n y C1 H1 V0L sing 479 n n C9 H2 V0L sing 480 n n C10 H3 V0L sing 481 n n C13 H4 V0L sing 482 n n C14 H5 V0L sing 483 n n C15 H6 V0L sing 484 n n C17 H7 V0L sing 485 n n C17 H8 V0L sing 486 n n C17 H9 V0L sing 487 n n C26 H10 V0L sing 488 n n C28 H11 V0L sing 489 n n C31 H12 V0L sing 490 n n C32 H13 V0L sing 491 n n C32 H14 V0L sing 492 n n C32 H15 V0L sing 493 n n # _atom_sites.entry_id 5LBW _atom_sites.fract_transf_matrix[1][1] 0.017422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009398 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 231 ZN ZN . D 3 FAD A 1 302 234 FAD FAD . E 4 V0L A 1 303 2 V0L VOL . F 3 FAD B 1 301 233 FAD FAD . G 2 ZN B 1 302 232 ZN ZN . H 4 V0L B 1 303 1 V0L VOL . I 5 HOH A 1 401 6 HOH HOH . I 5 HOH A 2 402 5 HOH HOH . I 5 HOH A 3 403 13 HOH HOH . I 5 HOH A 4 404 30 HOH HOH . I 5 HOH A 5 405 17 HOH HOH . I 5 HOH A 6 406 7 HOH HOH . I 5 HOH A 7 407 32 HOH HOH . I 5 HOH A 8 408 1 HOH HOH . I 5 HOH A 9 409 4 HOH HOH . I 5 HOH A 10 410 19 HOH HOH . I 5 HOH A 11 411 18 HOH HOH . I 5 HOH A 12 412 9 HOH HOH . I 5 HOH A 13 413 33 HOH HOH . I 5 HOH A 14 414 8 HOH HOH . I 5 HOH A 15 415 15 HOH HOH . I 5 HOH A 16 416 3 HOH HOH . I 5 HOH A 17 417 31 HOH HOH . I 5 HOH A 18 418 39 HOH HOH . I 5 HOH A 19 419 29 HOH HOH . J 5 HOH B 1 401 10 HOH HOH . J 5 HOH B 2 402 22 HOH HOH . J 5 HOH B 3 403 23 HOH HOH . J 5 HOH B 4 404 21 HOH HOH . J 5 HOH B 5 405 16 HOH HOH . J 5 HOH B 6 406 11 HOH HOH . J 5 HOH B 7 407 37 HOH HOH . J 5 HOH B 8 408 25 HOH HOH . J 5 HOH B 9 409 26 HOH HOH . J 5 HOH B 10 410 35 HOH HOH . J 5 HOH B 11 411 2 HOH HOH . J 5 HOH B 12 412 12 HOH HOH . J 5 HOH B 13 413 27 HOH HOH . J 5 HOH B 14 414 38 HOH HOH . J 5 HOH B 15 415 20 HOH HOH . J 5 HOH B 16 416 14 HOH HOH . J 5 HOH B 17 417 34 HOH HOH . J 5 HOH B 18 418 24 HOH HOH . J 5 HOH B 19 419 28 HOH HOH . J 5 HOH B 20 420 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 V0L . . . H 4 6.077 -9.425 13.756 1 61.86 ? C1 V0L 303 B 1 HETATM 2 C C8 V0L . . . H 4 7.366 -9.821 14.382 1 62.29 ? C8 V0L 303 B 1 HETATM 3 C C9 V0L . . . H 4 7.505 -10.058 15.749 1 62.55 ? C9 V0L 303 B 1 HETATM 4 C C10 V0L . . . H 4 8.759 -10.411 16.244 1 62.87 ? C10 V0L 303 B 1 HETATM 5 C C11 V0L . . . H 4 9.854 -10.521 15.384 1 63.28 ? C11 V0L 303 B 1 HETATM 6 N N1 V0L . . . H 4 9.691 -10.279 14.067 1 63.37 ? N1 V0L 303 B 1 HETATM 7 C C13 V0L . . . H 4 8.493 -9.935 13.56 1 62.65 ? C13 V0L 303 B 1 HETATM 8 C C14 V0L . . . H 4 10.888 -10.454 13.503 1 63.54 ? C14 V0L 303 B 1 HETATM 9 C C15 V0L . . . H 4 11.824 -10.806 14.446 1 63.4 ? C15 V0L 303 B 1 HETATM 10 N N2 V0L . . . H 4 11.155 -10.843 15.619 1 63.56 ? N2 V0L 303 B 1 HETATM 11 C C17 V0L . . . H 4 6.085 -7.9 13.611 1 61.83 ? C17 V0L 303 B 1 HETATM 12 N N3 V0L . . . H 4 4.85 -9.888 14.478 1 60.98 ? N3 V0L 303 B 1 HETATM 13 C C19 V0L . . . H 4 3.843 -9.262 15.084 1 60.25 ? C19 V0L 303 B 1 HETATM 14 C C20 V0L . . . H 4 2.955 -10.333 15.567 1 59.47 ? C20 V0L 303 B 1 HETATM 15 N N5 V0L . . . H 4 3.458 -11.541 15.233 1 59.54 ? N5 V0L 303 B 1 HETATM 16 N N4 V0L . . . H 4 4.66 -11.284 14.534 1 60.44 ? N4 V0L 303 B 1 HETATM 17 N N23 V0L . . . H 4 1.823 -10.042 16.249 1 58.98 ? N23 V0L 303 B 1 HETATM 18 N N24 V0L . . . H 4 3.491 -7.98 15.333 1 60.27 ? N24 V0L 303 B 1 HETATM 19 C C25 V0L . . . H 4 2.352 -7.71 16.021 1 59.64 ? C25 V0L 303 B 1 HETATM 20 C C26 V0L . . . H 4 1.521 -8.749 16.477 1 59.36 ? C26 V0L 303 B 1 HETATM 21 C C27 V0L . . . H 4 2.017 -6.275 16.25 1 60.19 ? C27 V0L 303 B 1 HETATM 22 C C28 V0L . . . H 4 1.017 -5.752 17.07 1 60.49 ? C28 V0L 303 B 1 HETATM 23 N N8 V0L . . . H 4 1.048 -4.4 16.974 1 61.09 ? N8 V0L 303 B 1 HETATM 24 N N9 V0L . . . H 4 2.084 -4.1 16.078 1 61.17 ? N9 V0L 303 B 1 HETATM 25 C C31 V0L . . . H 4 2.671 -5.21 15.639 1 60.66 ? C31 V0L 303 B 1 HETATM 26 C C32 V0L . . . H 4 2.328 -2.656 15.811 1 60.96 ? C32 V0L 303 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #