data_5LBX # _model_server_result.job_id O8HnkMjzruCYfXYeFkpB0g _model_server_result.datetime_utc '2024-11-25 00:16:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lbx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":407}' # _entry.id 5LBX # _exptl.entry_id 5LBX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 835.608 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CROTONYL COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LBX _cell.length_a 93.498 _cell.length_b 93.498 _cell.length_c 231.203 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 T N N # _chem_comp.formula 'C25 H40 N7 O17 P3 S' _chem_comp.formula_weight 835.608 _chem_comp.id COO _chem_comp.mon_nstd_flag . _chem_comp.name 'CROTONYL COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 O1 COO sing 70 n n C13 H13 COO sing 71 n n C13 C1 COO sing 72 n n C13 C11 COO sing 73 n n C11 C15 COO sing 74 n n C11 C14 COO sing 75 n n C11 C12 COO sing 76 n n C14 H141 COO sing 77 n n C14 H142 COO sing 78 n n C14 H143 COO sing 79 n n C12 H121 COO sing 80 n n C12 H122 COO sing 81 n n C12 O6A COO sing 82 n n O6A P2A COO sing 83 n n P2A O4A COO doub 84 n n P2A O5A COO sing 85 n n P2A O3A COO sing 86 n n O5A H5A COO sing 87 n n O3A P1A COO sing 88 n n P1A O2A COO doub 89 n n P1A O1A COO sing 90 n n P1A O5X COO sing 91 n n O1A H1A COO sing 92 n n O5X C5X COO sing 93 n n C5X H5X1 COO sing 94 n n C5X H5X2 COO sing 95 n n C5X C4X COO sing 96 n n C4X H4X COO sing 97 n n C4X O4X COO sing 98 n n C4X C3X COO sing 99 n n O4X C1X COO sing 100 n n C3X C2X COO sing 101 n n C3X H3X COO sing 102 n n C3X O3X COO sing 103 n n O3X P3X COO sing 104 n n P3X O9A COO doub 105 n n P3X O7A COO sing 106 n n P3X O8A COO sing 107 n n O7A H7A COO sing 108 n n O8A H2 COO sing 109 n n C2X C1X COO sing 110 n n C2X H2X COO sing 111 n n C2X O2X COO sing 112 n n O2X H1 COO sing 113 n n C1X H1X COO sing 114 n n C1X N9A COO sing 115 n n N9A C8A COO sing 116 n y N9A C4A COO sing 117 n y C8A H8A COO sing 118 n n C8A N7A COO doub 119 n y N7A C5A COO sing 120 n y C5A C6A COO doub 121 n y C5A C4A COO sing 122 n y C4A N3A COO doub 123 n y N3A C2A COO sing 124 n y C2A N1A COO doub 125 n y C2A H2A COO sing 126 n n N1A C6A COO sing 127 n y C6A N6A COO sing 128 n n N6A H6A1 COO sing 129 n n N6A H6A2 COO sing 130 n n O1 HO1 COO sing 131 n n C1 O2 COO doub 132 n n C1 N1 COO sing 133 n n N1 HN1 COO sing 134 n n N1 C2 COO sing 135 n n C2 H21 COO sing 136 n n C2 H22 COO sing 137 n n C2 C3 COO sing 138 n n C3 H31 COO sing 139 n n C3 H32 COO sing 140 n n C3 C4 COO sing 141 n n C4 O3 COO doub 142 n n C4 N2 COO sing 143 n n N2 HN2 COO sing 144 n n N2 C5 COO sing 145 n n C5 H51 COO sing 146 n n C5 H52 COO sing 147 n n C5 C6 COO sing 148 n n C6 H61 COO sing 149 n n C6 H62 COO sing 150 n n C6 S1 COO sing 151 n n S1 C7 COO sing 152 n n C7 O4 COO doub 153 n n C7 C8 COO sing 154 n n C8 H8 COO sing 155 n n C8 C9 COO doub 156 n n C9 H9 COO sing 157 n n C9 C10 COO sing 158 n n C10 H101 COO sing 159 n n C10 H102 COO sing 160 n n C10 H103 COO sing 161 n n C15 H151 COO sing 162 n n C15 H152 COO sing 163 n n C15 H153 COO sing 164 n n # _atom_sites.entry_id 5LBX _atom_sites.fract_transf_matrix[1][1] 0.010695 _atom_sites.fract_transf_matrix[1][2] 0.006175 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 401 401 NAP NAP . D 3 SO4 A 1 402 2 SO4 SO4 . E 3 SO4 A 1 403 3 SO4 SO4 . F 3 SO4 A 1 404 7 SO4 SO4 . G 3 SO4 A 1 405 8 SO4 SO4 . H 3 SO4 A 1 406 9 SO4 SO4 . I 3 SO4 A 1 407 11 SO4 SO4 . J 3 SO4 A 1 408 12 SO4 SO4 . K 3 SO4 A 1 409 13 SO4 SO4 . L 4 COO A 1 410 404 COO COO . M 5 CL A 1 411 1 CL CL . N 2 NAP B 1 401 402 NAP NAP . O 3 SO4 B 1 402 1 SO4 SO4 . P 3 SO4 B 1 403 4 SO4 SO4 . Q 3 SO4 B 1 404 5 SO4 SO4 . R 3 SO4 B 1 405 6 SO4 SO4 . S 3 SO4 B 1 406 10 SO4 SO4 . T 4 COO B 1 407 405 COO COO . U 6 HOH A 1 501 32 HOH HOH . U 6 HOH A 2 502 57 HOH HOH . U 6 HOH A 3 503 47 HOH HOH . U 6 HOH A 4 504 24 HOH HOH . U 6 HOH A 5 505 49 HOH HOH . U 6 HOH A 6 506 65 HOH HOH . U 6 HOH A 7 507 109 HOH HOH . U 6 HOH A 8 508 4 HOH HOH . U 6 HOH A 9 509 192 HOH HOH . U 6 HOH A 10 510 43 HOH HOH . U 6 HOH A 11 511 164 HOH HOH . U 6 HOH A 12 512 19 HOH HOH . U 6 HOH A 13 513 7 HOH HOH . U 6 HOH A 14 514 55 HOH HOH . U 6 HOH A 15 515 56 HOH HOH . U 6 HOH A 16 516 72 HOH HOH . U 6 HOH A 17 517 189 HOH HOH . U 6 HOH A 18 518 117 HOH HOH . U 6 HOH A 19 519 13 HOH HOH . U 6 HOH A 20 520 8 HOH HOH . U 6 HOH A 21 521 23 HOH HOH . U 6 HOH A 22 522 193 HOH HOH . U 6 HOH A 23 523 111 HOH HOH . U 6 HOH A 24 524 10 HOH HOH . U 6 HOH A 25 525 132 HOH HOH . U 6 HOH A 26 526 81 HOH HOH . U 6 HOH A 27 527 78 HOH HOH . U 6 HOH A 28 528 113 HOH HOH . U 6 HOH A 29 529 16 HOH HOH . U 6 HOH A 30 530 2 HOH HOH . U 6 HOH A 31 531 162 HOH HOH . U 6 HOH A 32 532 194 HOH HOH . U 6 HOH A 33 533 76 HOH HOH . U 6 HOH A 34 534 53 HOH HOH . U 6 HOH A 35 535 191 HOH HOH . U 6 HOH A 36 536 185 HOH HOH . U 6 HOH A 37 537 29 HOH HOH . U 6 HOH A 38 538 134 HOH HOH . U 6 HOH A 39 539 35 HOH HOH . U 6 HOH A 40 540 40 HOH HOH . U 6 HOH A 41 541 46 HOH HOH . U 6 HOH A 42 542 85 HOH HOH . U 6 HOH A 43 543 92 HOH HOH . U 6 HOH A 44 544 173 HOH HOH . U 6 HOH A 45 545 3 HOH HOH . U 6 HOH A 46 546 171 HOH HOH . U 6 HOH A 47 547 120 HOH HOH . U 6 HOH A 48 548 28 HOH HOH . U 6 HOH A 49 549 26 HOH HOH . U 6 HOH A 50 550 99 HOH HOH . U 6 HOH A 51 551 122 HOH HOH . U 6 HOH A 52 552 90 HOH HOH . U 6 HOH A 53 553 22 HOH HOH . U 6 HOH A 54 554 118 HOH HOH . U 6 HOH A 55 555 9 HOH HOH . U 6 HOH A 56 556 115 HOH HOH . U 6 HOH A 57 557 82 HOH HOH . U 6 HOH A 58 558 31 HOH HOH . U 6 HOH A 59 559 87 HOH HOH . U 6 HOH A 60 560 101 HOH HOH . U 6 HOH A 61 561 38 HOH HOH . U 6 HOH A 62 562 181 HOH HOH . U 6 HOH A 63 563 14 HOH HOH . U 6 HOH A 64 564 168 HOH HOH . U 6 HOH A 65 565 146 HOH HOH . U 6 HOH A 66 566 144 HOH HOH . U 6 HOH A 67 567 121 HOH HOH . U 6 HOH A 68 568 143 HOH HOH . U 6 HOH A 69 569 51 HOH HOH . U 6 HOH A 70 570 140 HOH HOH . U 6 HOH A 71 571 170 HOH HOH . U 6 HOH A 72 572 167 HOH HOH . U 6 HOH A 73 573 147 HOH HOH . U 6 HOH A 74 574 150 HOH HOH . U 6 HOH A 75 575 131 HOH HOH . U 6 HOH A 76 576 160 HOH HOH . U 6 HOH A 77 577 36 HOH HOH . U 6 HOH A 78 578 93 HOH HOH . U 6 HOH A 79 579 148 HOH HOH . U 6 HOH A 80 580 139 HOH HOH . U 6 HOH A 81 581 186 HOH HOH . U 6 HOH A 82 582 103 HOH HOH . U 6 HOH A 83 583 94 HOH HOH . U 6 HOH A 84 584 108 HOH HOH . U 6 HOH A 85 585 74 HOH HOH . U 6 HOH A 86 586 95 HOH HOH . U 6 HOH A 87 587 45 HOH HOH . U 6 HOH A 88 588 137 HOH HOH . U 6 HOH A 89 589 172 HOH HOH . U 6 HOH A 90 590 138 HOH HOH . U 6 HOH A 91 591 169 HOH HOH . U 6 HOH A 92 592 133 HOH HOH . U 6 HOH A 93 593 98 HOH HOH . U 6 HOH A 94 594 88 HOH HOH . U 6 HOH A 95 595 175 HOH HOH . U 6 HOH A 96 596 73 HOH HOH . U 6 HOH A 97 597 128 HOH HOH . U 6 HOH A 98 598 124 HOH HOH . U 6 HOH A 99 599 130 HOH HOH . U 6 HOH A 100 600 178 HOH HOH . U 6 HOH A 101 601 163 HOH HOH . V 6 HOH B 1 501 183 HOH HOH . V 6 HOH B 2 502 58 HOH HOH . V 6 HOH B 3 503 180 HOH HOH . V 6 HOH B 4 504 112 HOH HOH . V 6 HOH B 5 505 84 HOH HOH . V 6 HOH B 6 506 69 HOH HOH . V 6 HOH B 7 507 127 HOH HOH . V 6 HOH B 8 508 80 HOH HOH . V 6 HOH B 9 509 1 HOH HOH . V 6 HOH B 10 510 161 HOH HOH . V 6 HOH B 11 511 6 HOH HOH . V 6 HOH B 12 512 62 HOH HOH . V 6 HOH B 13 513 18 HOH HOH . V 6 HOH B 14 514 107 HOH HOH . V 6 HOH B 15 515 187 HOH HOH . V 6 HOH B 16 516 66 HOH HOH . V 6 HOH B 17 517 59 HOH HOH . V 6 HOH B 18 518 61 HOH HOH . V 6 HOH B 19 519 142 HOH HOH . V 6 HOH B 20 520 42 HOH HOH . V 6 HOH B 21 521 159 HOH HOH . V 6 HOH B 22 522 34 HOH HOH . V 6 HOH B 23 523 106 HOH HOH . V 6 HOH B 24 524 116 HOH HOH . V 6 HOH B 25 525 156 HOH HOH . V 6 HOH B 26 526 33 HOH HOH . V 6 HOH B 27 527 37 HOH HOH . V 6 HOH B 28 528 110 HOH HOH . V 6 HOH B 29 529 77 HOH HOH . V 6 HOH B 30 530 17 HOH HOH . V 6 HOH B 31 531 68 HOH HOH . V 6 HOH B 32 532 11 HOH HOH . V 6 HOH B 33 533 5 HOH HOH . V 6 HOH B 34 534 97 HOH HOH . V 6 HOH B 35 535 79 HOH HOH . V 6 HOH B 36 536 64 HOH HOH . V 6 HOH B 37 537 20 HOH HOH . V 6 HOH B 38 538 145 HOH HOH . V 6 HOH B 39 539 50 HOH HOH . V 6 HOH B 40 540 15 HOH HOH . V 6 HOH B 41 541 12 HOH HOH . V 6 HOH B 42 542 27 HOH HOH . V 6 HOH B 43 543 83 HOH HOH . V 6 HOH B 44 544 182 HOH HOH . V 6 HOH B 45 545 104 HOH HOH . V 6 HOH B 46 546 67 HOH HOH . V 6 HOH B 47 547 153 HOH HOH . V 6 HOH B 48 548 30 HOH HOH . V 6 HOH B 49 549 54 HOH HOH . V 6 HOH B 50 550 158 HOH HOH . V 6 HOH B 51 551 136 HOH HOH . V 6 HOH B 52 552 48 HOH HOH . V 6 HOH B 53 553 155 HOH HOH . V 6 HOH B 54 554 123 HOH HOH . V 6 HOH B 55 555 60 HOH HOH . V 6 HOH B 56 556 25 HOH HOH . V 6 HOH B 57 557 21 HOH HOH . V 6 HOH B 58 558 176 HOH HOH . V 6 HOH B 59 559 188 HOH HOH . V 6 HOH B 60 560 114 HOH HOH . V 6 HOH B 61 561 41 HOH HOH . V 6 HOH B 62 562 195 HOH HOH . V 6 HOH B 63 563 39 HOH HOH . V 6 HOH B 64 564 174 HOH HOH . V 6 HOH B 65 565 52 HOH HOH . V 6 HOH B 66 566 71 HOH HOH . V 6 HOH B 67 567 151 HOH HOH . V 6 HOH B 68 568 63 HOH HOH . V 6 HOH B 69 569 152 HOH HOH . V 6 HOH B 70 570 102 HOH HOH . V 6 HOH B 71 571 105 HOH HOH . V 6 HOH B 72 572 157 HOH HOH . V 6 HOH B 73 573 165 HOH HOH . V 6 HOH B 74 574 179 HOH HOH . V 6 HOH B 75 575 154 HOH HOH . V 6 HOH B 76 576 125 HOH HOH . V 6 HOH B 77 577 166 HOH HOH . V 6 HOH B 78 578 135 HOH HOH . V 6 HOH B 79 579 184 HOH HOH . V 6 HOH B 80 580 190 HOH HOH . V 6 HOH B 81 581 119 HOH HOH . V 6 HOH B 82 582 126 HOH HOH . V 6 HOH B 83 583 141 HOH HOH . V 6 HOH B 84 584 196 HOH HOH . V 6 HOH B 85 585 100 HOH HOH . V 6 HOH B 86 586 86 HOH HOH . V 6 HOH B 87 587 177 HOH HOH . V 6 HOH B 88 588 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 COO . . . T 4 -40.147 18.947 -14.005 1 114.65 ? C13 COO 407 B 1 HETATM 2 C C11 COO . . . T 4 -39.763 18.531 -12.586 1 116.3 ? C11 COO 407 B 1 HETATM 3 C C14 COO . . . T 4 -39.932 17.021 -12.445 1 115.99 ? C14 COO 407 B 1 HETATM 4 C C12 COO . . . T 4 -40.588 19.248 -11.501 1 118.32 ? C12 COO 407 B 1 HETATM 5 O O6A COO . . . T 4 -39.838 19.471 -10.289 1 119.88 ? O6A COO 407 B 1 HETATM 6 P P2A COO . . . T 4 -40.324 19.057 -8.791 1 120.69 ? P2A COO 407 B 1 HETATM 7 O O4A COO . . . T 4 -41.834 18.92 -8.751 1 120.41 ? O4A COO 407 B 1 HETATM 8 O O5A COO . . . T 4 -39.679 17.734 -8.437 1 120.32 ? O5A COO 407 B 1 HETATM 9 O O3A COO . . . T 4 -39.833 20.14 -7.675 1 121.98 ? O3A COO 407 B 1 HETATM 10 P P1A COO . . . T 4 -40.685 21.407 -7.114 1 122.89 ? P1A COO 407 B 1 HETATM 11 O O2A COO . . . T 4 -40.928 22.385 -8.239 1 123.11 ? O2A COO 407 B 1 HETATM 12 O O1A COO . . . T 4 -39.889 22.094 -6.026 1 123.08 ? O1A COO 407 B 1 HETATM 13 O O5X COO . . . T 4 -42.003 20.925 -6.542 1 123.19 ? O5X COO 407 B 1 HETATM 14 O O1 COO . . . T 4 -39.703 20.296 -14.221 1 114.8 ? O1 COO 407 B 1 HETATM 15 C C1 COO . . . T 4 -41.632 18.859 -14.282 1 112.54 ? C1 COO 407 B 1 HETATM 16 O O2 COO . . . T 4 -42.356 19.699 -13.767 1 112.13 ? O2 COO 407 B 1 HETATM 17 N N1 COO . . . T 4 -42.155 17.889 -15.061 1 110.73 ? N1 COO 407 B 1 HETATM 18 C C2 COO . . . T 4 -41.443 16.741 -15.622 1 108.61 ? C2 COO 407 B 1 HETATM 19 C C3 COO . . . T 4 -40.474 16.982 -16.784 1 106.23 ? C3 COO 407 B 1 HETATM 20 C C4 COO . . . T 4 -39.246 16.191 -16.412 1 104.09 ? C4 COO 407 B 1 HETATM 21 O O3 COO . . . T 4 -39.396 15.009 -16.194 1 103.77 ? O3 COO 407 B 1 HETATM 22 N N2 COO . . . T 4 -38.03 16.705 -16.317 1 102.23 ? N2 COO 407 B 1 HETATM 23 C C5 COO . . . T 4 -37.549 17.999 -16.743 1 101.37 ? C5 COO 407 B 1 HETATM 24 C C6 COO . . . T 4 -36.081 17.691 -17.043 1 101.32 ? C6 COO 407 B 1 HETATM 25 S S1 COO . . . T 4 -35.111 18.967 -17.787 1 100.21 ? S1 COO 407 B 1 HETATM 26 C C7 COO . . . T 4 -34.829 18.658 -19.41 1 98.5 ? C7 COO 407 B 1 HETATM 27 O O4 COO . . . T 4 -35.579 17.922 -20.045 1 98.2 ? O4 COO 407 B 1 HETATM 28 C C8 COO . . . T 4 -33.676 19.321 -20.065 1 96.75 ? C8 COO 407 B 1 HETATM 29 C C9 COO . . . T 4 -33.47 19.214 -21.379 1 94.96 ? C9 COO 407 B 1 HETATM 30 C C10 COO . . . T 4 -32.296 19.908 -22.028 1 93.93 ? C10 COO 407 B 1 HETATM 31 C C15 COO . . . T 4 -38.28 18.878 -12.461 1 116.08 ? C15 COO 407 B 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #