data_5LCA # _model_server_result.job_id l-O6Rfgo_sq4kdUYZ2yvPg _model_server_result.datetime_utc '2024-11-01 06:40:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lca # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 5LCA # _exptl.entry_id 5LCA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LCA _cell.length_a 40.487 _cell.length_b 65.313 _cell.length_c 70.716 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LCA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 114 A HIS 114 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc2 A ND1 HIS 116 A HIS 116 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc3 A OD2 ASP 118 A ASP 118 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc4 A NE2 HIS 179 A HIS 179 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc5 A SG CYS 198 A CYS 198 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc6 A NE2 HIS 240 A HIS 240 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc7 B ZN ZN . A ZN 501 1_555 J O HOH . A HOH 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc8 C ZN ZN . A ZN 502 1_555 J O HOH . A HOH 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 164 n n C1 C2 GOL sing 165 n n C1 H11 GOL sing 166 n n C1 H12 GOL sing 167 n n O1 HO1 GOL sing 168 n n C2 O2 GOL sing 169 n n C2 C3 GOL sing 170 n n C2 H2 GOL sing 171 n n O2 HO2 GOL sing 172 n n C3 O3 GOL sing 173 n n C3 H31 GOL sing 174 n n C3 H32 GOL sing 175 n n O3 HO3 GOL sing 176 n n # _atom_sites.entry_id 5LCA _atom_sites.fract_transf_matrix[1][1] 0.024699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 501 ZN ZN . C 2 ZN A 1 502 502 ZN ZN . D 3 B06 A 1 503 503 B06 B06 . E 4 GOL A 1 504 601 GOL GOL . F 4 GOL A 1 505 602 GOL GOL . G 4 GOL A 1 506 603 GOL GOL . H 4 GOL A 1 507 604 GOL GOL . I 4 GOL A 1 508 605 GOL GOL . J 5 HOH A 1 601 893 HOH HOH . J 5 HOH A 2 602 798 HOH HOH . J 5 HOH A 3 603 880 HOH HOH . J 5 HOH A 4 604 859 HOH HOH . J 5 HOH A 5 605 785 HOH HOH . J 5 HOH A 6 606 821 HOH HOH . J 5 HOH A 7 607 772 HOH HOH . J 5 HOH A 8 608 754 HOH HOH . J 5 HOH A 9 609 868 HOH HOH . J 5 HOH A 10 610 722 HOH HOH . J 5 HOH A 11 611 746 HOH HOH . J 5 HOH A 12 612 724 HOH HOH . J 5 HOH A 13 613 723 HOH HOH . J 5 HOH A 14 614 837 HOH HOH . J 5 HOH A 15 615 764 HOH HOH . J 5 HOH A 16 616 736 HOH HOH . J 5 HOH A 17 617 757 HOH HOH . J 5 HOH A 18 618 809 HOH HOH . J 5 HOH A 19 619 760 HOH HOH . J 5 HOH A 20 620 784 HOH HOH . J 5 HOH A 21 621 704 HOH HOH . J 5 HOH A 22 622 780 HOH HOH . J 5 HOH A 23 623 706 HOH HOH . J 5 HOH A 24 624 791 HOH HOH . J 5 HOH A 25 625 797 HOH HOH . J 5 HOH A 26 626 781 HOH HOH . J 5 HOH A 27 627 779 HOH HOH . J 5 HOH A 28 628 776 HOH HOH . J 5 HOH A 29 629 750 HOH HOH . J 5 HOH A 30 630 719 HOH HOH . J 5 HOH A 31 631 825 HOH HOH . J 5 HOH A 32 632 712 HOH HOH . J 5 HOH A 33 633 703 HOH HOH . J 5 HOH A 34 634 881 HOH HOH . J 5 HOH A 35 635 882 HOH HOH . J 5 HOH A 36 636 749 HOH HOH . J 5 HOH A 37 637 786 HOH HOH . J 5 HOH A 38 638 777 HOH HOH . J 5 HOH A 39 639 770 HOH HOH . J 5 HOH A 40 640 714 HOH HOH . J 5 HOH A 41 641 715 HOH HOH . J 5 HOH A 42 642 707 HOH HOH . J 5 HOH A 43 643 888 HOH HOH . J 5 HOH A 44 644 728 HOH HOH . J 5 HOH A 45 645 725 HOH HOH . J 5 HOH A 46 646 805 HOH HOH . J 5 HOH A 47 647 839 HOH HOH . J 5 HOH A 48 648 884 HOH HOH . J 5 HOH A 49 649 742 HOH HOH . J 5 HOH A 50 650 883 HOH HOH . J 5 HOH A 51 651 763 HOH HOH . J 5 HOH A 52 652 878 HOH HOH . J 5 HOH A 53 653 713 HOH HOH . J 5 HOH A 54 654 756 HOH HOH . J 5 HOH A 55 655 727 HOH HOH . J 5 HOH A 56 656 896 HOH HOH . J 5 HOH A 57 657 718 HOH HOH . J 5 HOH A 58 658 758 HOH HOH . J 5 HOH A 59 659 812 HOH HOH . J 5 HOH A 60 660 771 HOH HOH . J 5 HOH A 61 661 894 HOH HOH . J 5 HOH A 62 662 738 HOH HOH . J 5 HOH A 63 663 774 HOH HOH . J 5 HOH A 64 664 748 HOH HOH . J 5 HOH A 65 665 735 HOH HOH . J 5 HOH A 66 666 752 HOH HOH . J 5 HOH A 67 667 711 HOH HOH . J 5 HOH A 68 668 739 HOH HOH . J 5 HOH A 69 669 720 HOH HOH . J 5 HOH A 70 670 733 HOH HOH . J 5 HOH A 71 671 823 HOH HOH . J 5 HOH A 72 672 731 HOH HOH . J 5 HOH A 73 673 755 HOH HOH . J 5 HOH A 74 674 822 HOH HOH . J 5 HOH A 75 675 846 HOH HOH . J 5 HOH A 76 676 807 HOH HOH . J 5 HOH A 77 677 729 HOH HOH . J 5 HOH A 78 678 708 HOH HOH . J 5 HOH A 79 679 726 HOH HOH . J 5 HOH A 80 680 743 HOH HOH . J 5 HOH A 81 681 768 HOH HOH . J 5 HOH A 82 682 744 HOH HOH . J 5 HOH A 83 683 806 HOH HOH . J 5 HOH A 84 684 701 HOH HOH . J 5 HOH A 85 685 737 HOH HOH . J 5 HOH A 86 686 851 HOH HOH . J 5 HOH A 87 687 861 HOH HOH . J 5 HOH A 88 688 810 HOH HOH . J 5 HOH A 89 689 842 HOH HOH . J 5 HOH A 90 690 789 HOH HOH . J 5 HOH A 91 691 804 HOH HOH . J 5 HOH A 92 692 751 HOH HOH . J 5 HOH A 93 693 745 HOH HOH . J 5 HOH A 94 694 815 HOH HOH . J 5 HOH A 95 695 740 HOH HOH . J 5 HOH A 96 696 787 HOH HOH . J 5 HOH A 97 697 761 HOH HOH . J 5 HOH A 98 698 721 HOH HOH . J 5 HOH A 99 699 818 HOH HOH . J 5 HOH A 100 700 886 HOH HOH . J 5 HOH A 101 701 730 HOH HOH . J 5 HOH A 102 702 717 HOH HOH . J 5 HOH A 103 703 778 HOH HOH . J 5 HOH A 104 704 841 HOH HOH . J 5 HOH A 105 705 840 HOH HOH . J 5 HOH A 106 706 808 HOH HOH . J 5 HOH A 107 707 759 HOH HOH . J 5 HOH A 108 708 879 HOH HOH . J 5 HOH A 109 709 803 HOH HOH . J 5 HOH A 110 710 766 HOH HOH . J 5 HOH A 111 711 753 HOH HOH . J 5 HOH A 112 712 741 HOH HOH . J 5 HOH A 113 713 769 HOH HOH . J 5 HOH A 114 714 887 HOH HOH . J 5 HOH A 115 715 800 HOH HOH . J 5 HOH A 116 716 795 HOH HOH . J 5 HOH A 117 717 814 HOH HOH . J 5 HOH A 118 718 869 HOH HOH . J 5 HOH A 119 719 860 HOH HOH . J 5 HOH A 120 720 710 HOH HOH . J 5 HOH A 121 721 871 HOH HOH . J 5 HOH A 122 722 829 HOH HOH . J 5 HOH A 123 723 862 HOH HOH . J 5 HOH A 124 724 863 HOH HOH . J 5 HOH A 125 725 866 HOH HOH . J 5 HOH A 126 726 793 HOH HOH . J 5 HOH A 127 727 836 HOH HOH . J 5 HOH A 128 728 834 HOH HOH . J 5 HOH A 129 729 824 HOH HOH . J 5 HOH A 130 730 792 HOH HOH . J 5 HOH A 131 731 864 HOH HOH . J 5 HOH A 132 732 875 HOH HOH . J 5 HOH A 133 733 867 HOH HOH . J 5 HOH A 134 734 705 HOH HOH . J 5 HOH A 135 735 850 HOH HOH . J 5 HOH A 136 736 734 HOH HOH . J 5 HOH A 137 737 889 HOH HOH . J 5 HOH A 138 738 820 HOH HOH . J 5 HOH A 139 739 796 HOH HOH . J 5 HOH A 140 740 819 HOH HOH . J 5 HOH A 141 741 891 HOH HOH . J 5 HOH A 142 742 802 HOH HOH . J 5 HOH A 143 743 890 HOH HOH . J 5 HOH A 144 744 801 HOH HOH . J 5 HOH A 145 745 835 HOH HOH . J 5 HOH A 146 746 762 HOH HOH . J 5 HOH A 147 747 892 HOH HOH . J 5 HOH A 148 748 775 HOH HOH . J 5 HOH A 149 749 849 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -10.214 25.592 -3.144 1 33.26 ? C1 GOL 505 A 1 HETATM 2 O O1 GOL . . . F 4 -9.153 24.744 -2.768 1 31.5 ? O1 GOL 505 A 1 HETATM 3 C C2 GOL . . . F 4 -10.854 25.089 -4.43 1 36.91 ? C2 GOL 505 A 1 HETATM 4 O O2 GOL . . . F 4 -11.365 23.79 -4.237 1 38.43 ? O2 GOL 505 A 1 HETATM 5 C C3 GOL . . . F 4 -11.992 26.017 -4.833 1 40.35 ? C3 GOL 505 A 1 HETATM 6 O O3 GOL . . . F 4 -12.567 25.561 -6.034 1 44.75 ? O3 GOL 505 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #