data_5LCF # _model_server_result.job_id CoXEJRvPbjJvFZFS2zBH0g _model_server_result.datetime_utc '2024-11-26 17:29:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lcf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5LCF # _exptl.entry_id 5LCF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LCF _cell.length_a 40.46 _cell.length_b 65.637 _cell.length_c 70.721 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LCF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 114 A HIS 114 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc2 A ND1 HIS 116 A HIS 116 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc3 A OD2 ASP 118 A ASP 118 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc4 A NE2 HIS 179 A HIS 179 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 A SG CYS 198 A CYS 198 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc6 A NE2 HIS 240 A HIS 240 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc7 B ZN ZN . A ZN 501 1_555 H O HOH . A HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc8 C ZN ZN . A ZN 502 1_555 H O HOH . A HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc9 D MG MG . A MG 503 1_555 H O HOH . A HOH 624 3_355 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc10 D MG MG . A MG 503 1_555 H O HOH . A HOH 646 3_355 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc11 D MG MG . A MG 503 1_555 H O HOH . A HOH 657 3_355 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc12 D MG MG . A MG 503 1_555 H O HOH . A HOH 713 3_355 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc13 D MG MG . A MG 503 1_555 H O HOH . A HOH 832 3_355 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc14 D MG MG . A MG 503 1_555 H O HOH . A HOH 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LCF _atom_sites.fract_transf_matrix[1][1] 0.024716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 501 ZN ZN . C 2 ZN A 1 502 502 ZN ZN . D 3 MG A 1 503 503 MG MG . E 4 6TJ A 1 504 504 6TJ B32 . F 5 GOL A 1 505 601 GOL GOL . G 5 GOL A 1 506 602 GOL GOL . H 6 HOH A 1 601 943 HOH HOH . H 6 HOH A 2 602 856 HOH HOH . H 6 HOH A 3 603 777 HOH HOH . H 6 HOH A 4 604 776 HOH HOH . H 6 HOH A 5 605 935 HOH HOH . H 6 HOH A 6 606 934 HOH HOH . H 6 HOH A 7 607 826 HOH HOH . H 6 HOH A 8 608 772 HOH HOH . H 6 HOH A 9 609 762 HOH HOH . H 6 HOH A 10 610 851 HOH HOH . H 6 HOH A 11 611 793 HOH HOH . H 6 HOH A 12 612 871 HOH HOH . H 6 HOH A 13 613 889 HOH HOH . H 6 HOH A 14 614 763 HOH HOH . H 6 HOH A 15 615 885 HOH HOH . H 6 HOH A 16 616 958 HOH HOH . H 6 HOH A 17 617 808 HOH HOH . H 6 HOH A 18 618 963 HOH HOH . H 6 HOH A 19 619 862 HOH HOH . H 6 HOH A 20 620 962 HOH HOH . H 6 HOH A 21 621 870 HOH HOH . H 6 HOH A 22 622 718 HOH HOH . H 6 HOH A 23 623 735 HOH HOH . H 6 HOH A 24 624 787 HOH HOH . H 6 HOH A 25 625 720 HOH HOH . H 6 HOH A 26 626 896 HOH HOH . H 6 HOH A 27 627 796 HOH HOH . H 6 HOH A 28 628 861 HOH HOH . H 6 HOH A 29 629 853 HOH HOH . H 6 HOH A 30 630 765 HOH HOH . H 6 HOH A 31 631 770 HOH HOH . H 6 HOH A 32 632 978 HOH HOH . H 6 HOH A 33 633 971 HOH HOH . H 6 HOH A 34 634 703 HOH HOH . H 6 HOH A 35 635 950 HOH HOH . H 6 HOH A 36 636 848 HOH HOH . H 6 HOH A 37 637 812 HOH HOH . H 6 HOH A 38 638 722 HOH HOH . H 6 HOH A 39 639 773 HOH HOH . H 6 HOH A 40 640 738 HOH HOH . H 6 HOH A 41 641 736 HOH HOH . H 6 HOH A 42 642 937 HOH HOH . H 6 HOH A 43 643 724 HOH HOH . H 6 HOH A 44 644 912 HOH HOH . H 6 HOH A 45 645 825 HOH HOH . H 6 HOH A 46 646 789 HOH HOH . H 6 HOH A 47 647 952 HOH HOH . H 6 HOH A 48 648 780 HOH HOH . H 6 HOH A 49 649 707 HOH HOH . H 6 HOH A 50 650 737 HOH HOH . H 6 HOH A 51 651 782 HOH HOH . H 6 HOH A 52 652 745 HOH HOH . H 6 HOH A 53 653 717 HOH HOH . H 6 HOH A 54 654 732 HOH HOH . H 6 HOH A 55 655 711 HOH HOH . H 6 HOH A 56 656 903 HOH HOH . H 6 HOH A 57 657 914 HOH HOH . H 6 HOH A 58 658 891 HOH HOH . H 6 HOH A 59 659 719 HOH HOH . H 6 HOH A 60 660 926 HOH HOH . H 6 HOH A 61 661 715 HOH HOH . H 6 HOH A 62 662 713 HOH HOH . H 6 HOH A 63 663 805 HOH HOH . H 6 HOH A 64 664 712 HOH HOH . H 6 HOH A 65 665 704 HOH HOH . H 6 HOH A 66 666 725 HOH HOH . H 6 HOH A 67 667 863 HOH HOH . H 6 HOH A 68 668 721 HOH HOH . H 6 HOH A 69 669 859 HOH HOH . H 6 HOH A 70 670 730 HOH HOH . H 6 HOH A 71 671 768 HOH HOH . H 6 HOH A 72 672 865 HOH HOH . H 6 HOH A 73 673 832 HOH HOH . H 6 HOH A 74 674 872 HOH HOH . H 6 HOH A 75 675 741 HOH HOH . H 6 HOH A 76 676 753 HOH HOH . H 6 HOH A 77 677 877 HOH HOH . H 6 HOH A 78 678 931 HOH HOH . H 6 HOH A 79 679 731 HOH HOH . H 6 HOH A 80 680 749 HOH HOH . H 6 HOH A 81 681 884 HOH HOH . H 6 HOH A 82 682 781 HOH HOH . H 6 HOH A 83 683 716 HOH HOH . H 6 HOH A 84 684 894 HOH HOH . H 6 HOH A 85 685 791 HOH HOH . H 6 HOH A 86 686 973 HOH HOH . H 6 HOH A 87 687 742 HOH HOH . H 6 HOH A 88 688 811 HOH HOH . H 6 HOH A 89 689 747 HOH HOH . H 6 HOH A 90 690 709 HOH HOH . H 6 HOH A 91 691 907 HOH HOH . H 6 HOH A 92 692 834 HOH HOH . H 6 HOH A 93 693 748 HOH HOH . H 6 HOH A 94 694 904 HOH HOH . H 6 HOH A 95 695 758 HOH HOH . H 6 HOH A 96 696 951 HOH HOH . H 6 HOH A 97 697 910 HOH HOH . H 6 HOH A 98 698 744 HOH HOH . H 6 HOH A 99 699 959 HOH HOH . H 6 HOH A 100 700 928 HOH HOH . H 6 HOH A 101 701 794 HOH HOH . H 6 HOH A 102 702 769 HOH HOH . H 6 HOH A 103 703 975 HOH HOH . H 6 HOH A 104 704 706 HOH HOH . H 6 HOH A 105 705 818 HOH HOH . H 6 HOH A 106 706 779 HOH HOH . H 6 HOH A 107 707 752 HOH HOH . H 6 HOH A 108 708 804 HOH HOH . H 6 HOH A 109 709 757 HOH HOH . H 6 HOH A 110 710 867 HOH HOH . H 6 HOH A 111 711 723 HOH HOH . H 6 HOH A 112 712 701 HOH HOH . H 6 HOH A 113 713 915 HOH HOH . H 6 HOH A 114 714 754 HOH HOH . H 6 HOH A 115 715 897 HOH HOH . H 6 HOH A 116 716 734 HOH HOH . H 6 HOH A 117 717 750 HOH HOH . H 6 HOH A 118 718 710 HOH HOH . H 6 HOH A 119 719 714 HOH HOH . H 6 HOH A 120 720 739 HOH HOH . H 6 HOH A 121 721 837 HOH HOH . H 6 HOH A 122 722 908 HOH HOH . H 6 HOH A 123 723 743 HOH HOH . H 6 HOH A 124 724 946 HOH HOH . H 6 HOH A 125 725 846 HOH HOH . H 6 HOH A 126 726 821 HOH HOH . H 6 HOH A 127 727 729 HOH HOH . H 6 HOH A 128 728 733 HOH HOH . H 6 HOH A 129 729 783 HOH HOH . H 6 HOH A 130 730 827 HOH HOH . H 6 HOH A 131 731 778 HOH HOH . H 6 HOH A 132 732 751 HOH HOH . H 6 HOH A 133 733 830 HOH HOH . H 6 HOH A 134 734 740 HOH HOH . H 6 HOH A 135 735 767 HOH HOH . H 6 HOH A 136 736 764 HOH HOH . H 6 HOH A 137 737 883 HOH HOH . H 6 HOH A 138 738 833 HOH HOH . H 6 HOH A 139 739 746 HOH HOH . H 6 HOH A 140 740 820 HOH HOH . H 6 HOH A 141 741 785 HOH HOH . H 6 HOH A 142 742 705 HOH HOH . H 6 HOH A 143 743 876 HOH HOH . H 6 HOH A 144 744 874 HOH HOH . H 6 HOH A 145 745 925 HOH HOH . H 6 HOH A 146 746 844 HOH HOH . H 6 HOH A 147 747 760 HOH HOH . H 6 HOH A 148 748 933 HOH HOH . H 6 HOH A 149 749 849 HOH HOH . H 6 HOH A 150 750 836 HOH HOH . H 6 HOH A 151 751 771 HOH HOH . H 6 HOH A 152 752 784 HOH HOH . H 6 HOH A 153 753 898 HOH HOH . H 6 HOH A 154 754 855 HOH HOH . H 6 HOH A 155 755 929 HOH HOH . H 6 HOH A 156 756 806 HOH HOH . H 6 HOH A 157 757 759 HOH HOH . H 6 HOH A 158 758 726 HOH HOH . H 6 HOH A 159 759 831 HOH HOH . H 6 HOH A 160 760 981 HOH HOH . H 6 HOH A 161 761 786 HOH HOH . H 6 HOH A 162 762 900 HOH HOH . H 6 HOH A 163 763 965 HOH HOH . H 6 HOH A 164 764 727 HOH HOH . H 6 HOH A 165 765 905 HOH HOH . H 6 HOH A 166 766 802 HOH HOH . H 6 HOH A 167 767 966 HOH HOH . H 6 HOH A 168 768 854 HOH HOH . H 6 HOH A 169 769 972 HOH HOH . H 6 HOH A 170 770 755 HOH HOH . H 6 HOH A 171 771 823 HOH HOH . H 6 HOH A 172 772 847 HOH HOH . H 6 HOH A 173 773 845 HOH HOH . H 6 HOH A 174 774 892 HOH HOH . H 6 HOH A 175 775 868 HOH HOH . H 6 HOH A 176 776 841 HOH HOH . H 6 HOH A 177 777 810 HOH HOH . H 6 HOH A 178 778 788 HOH HOH . H 6 HOH A 179 779 798 HOH HOH . H 6 HOH A 180 780 866 HOH HOH . H 6 HOH A 181 781 817 HOH HOH . H 6 HOH A 182 782 890 HOH HOH . H 6 HOH A 183 783 803 HOH HOH . H 6 HOH A 184 784 801 HOH HOH . H 6 HOH A 185 785 893 HOH HOH . H 6 HOH A 186 786 792 HOH HOH . H 6 HOH A 187 787 957 HOH HOH . H 6 HOH A 188 788 814 HOH HOH . H 6 HOH A 189 789 924 HOH HOH . H 6 HOH A 190 790 835 HOH HOH . H 6 HOH A 191 791 911 HOH HOH . H 6 HOH A 192 792 979 HOH HOH . H 6 HOH A 193 793 816 HOH HOH . H 6 HOH A 194 794 899 HOH HOH . H 6 HOH A 195 795 879 HOH HOH . H 6 HOH A 196 796 969 HOH HOH . H 6 HOH A 197 797 976 HOH HOH . H 6 HOH A 198 798 913 HOH HOH . H 6 HOH A 199 799 947 HOH HOH . H 6 HOH A 200 800 909 HOH HOH . H 6 HOH A 201 801 948 HOH HOH . H 6 HOH A 202 802 882 HOH HOH . H 6 HOH A 203 803 920 HOH HOH . H 6 HOH A 204 804 953 HOH HOH . H 6 HOH A 205 805 930 HOH HOH . H 6 HOH A 206 806 857 HOH HOH . H 6 HOH A 207 807 799 HOH HOH . H 6 HOH A 208 808 974 HOH HOH . H 6 HOH A 209 809 932 HOH HOH . H 6 HOH A 210 810 822 HOH HOH . H 6 HOH A 211 811 800 HOH HOH . H 6 HOH A 212 812 860 HOH HOH . H 6 HOH A 213 813 888 HOH HOH . H 6 HOH A 214 814 864 HOH HOH . H 6 HOH A 215 815 840 HOH HOH . H 6 HOH A 216 816 829 HOH HOH . H 6 HOH A 217 817 940 HOH HOH . H 6 HOH A 218 818 809 HOH HOH . H 6 HOH A 219 819 967 HOH HOH . H 6 HOH A 220 820 941 HOH HOH . H 6 HOH A 221 821 980 HOH HOH . H 6 HOH A 222 822 815 HOH HOH . H 6 HOH A 223 823 956 HOH HOH . H 6 HOH A 224 824 887 HOH HOH . H 6 HOH A 225 825 842 HOH HOH . H 6 HOH A 226 826 944 HOH HOH . H 6 HOH A 227 827 852 HOH HOH . H 6 HOH A 228 828 790 HOH HOH . H 6 HOH A 229 829 838 HOH HOH . H 6 HOH A 230 830 942 HOH HOH . H 6 HOH A 231 831 875 HOH HOH . H 6 HOH A 232 832 797 HOH HOH . H 6 HOH A 233 833 775 HOH HOH . H 6 HOH A 234 834 939 HOH HOH . H 6 HOH A 235 835 828 HOH HOH . H 6 HOH A 236 836 756 HOH HOH . H 6 HOH A 237 837 807 HOH HOH . H 6 HOH A 238 838 858 HOH HOH . H 6 HOH A 239 839 850 HOH HOH . H 6 HOH A 240 840 795 HOH HOH . H 6 HOH A 241 841 766 HOH HOH . H 6 HOH A 242 842 813 HOH HOH . H 6 HOH A 243 843 869 HOH HOH . H 6 HOH A 244 844 843 HOH HOH . H 6 HOH A 245 845 880 HOH HOH . H 6 HOH A 246 846 824 HOH HOH . H 6 HOH A 247 847 881 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -32.138 _atom_site.Cartn_y 99.791 _atom_site.Cartn_z 26.953 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 924 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #