data_5LDJ # _model_server_result.job_id xEPrl1eogD5TYahncxGO1Q _model_server_result.datetime_utc '2024-12-05 00:46:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ldj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":202}' # _entry.id 5LDJ # _exptl.entry_id 5LDJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 106.26 _cell.angle_beta 106.14 _cell.angle_gamma 103.06 _cell.entry_id 5LDJ _cell.length_a 54.73 _cell.length_b 63.52 _cell.length_c 67.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LDJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,J 1 1 B,F,K 2 1 C,G,L 3 1 D,H,I,M 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 5LDJ _atom_sites.fract_transf_matrix[1][1] 0.018272 _atom_sites.fract_transf_matrix[1][2] 0.004238 _atom_sites.fract_transf_matrix[1][3] 0.007353 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016161 _atom_sites.fract_transf_matrix[2][3] 0.006365 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 201 2 PO4 PO4 . F 2 PO4 B 1 201 1 PO4 PO4 . G 2 PO4 C 1 201 3 PO4 PO4 . H 2 PO4 D 1 201 4 PO4 PO4 . I 2 PO4 D 1 202 5 PO4 PO4 . J 3 HOH A 1 301 11 HOH HOH . J 3 HOH A 2 302 2 HOH HOH . J 3 HOH A 3 303 3 HOH HOH . J 3 HOH A 4 304 13 HOH HOH . J 3 HOH A 5 305 4 HOH HOH . J 3 HOH A 6 306 1 HOH HOH . K 3 HOH B 1 301 14 HOH HOH . K 3 HOH B 2 302 16 HOH HOH . K 3 HOH B 3 303 17 HOH HOH . K 3 HOH B 4 304 18 HOH HOH . K 3 HOH B 5 305 15 HOH HOH . L 3 HOH C 1 301 19 HOH HOH . L 3 HOH C 2 302 6 HOH HOH . L 3 HOH C 3 303 12 HOH HOH . L 3 HOH C 4 304 20 HOH HOH . L 3 HOH C 5 305 5 HOH HOH . M 3 HOH D 1 301 9 HOH HOH . M 3 HOH D 2 302 7 HOH HOH . M 3 HOH D 3 303 8 HOH HOH . M 3 HOH D 4 304 21 HOH HOH . M 3 HOH D 5 305 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . I 2 -18.684 128.121 -6.024 1 117.66 ? P PO4 202 D 1 HETATM 2 O O1 PO4 . . . I 2 -18.583 129.213 -7.061 1 118.19 ? O1 PO4 202 D 1 HETATM 3 O O2 PO4 . . . I 2 -19.874 128.367 -5.126 1 117.32 ? O2 PO4 202 D 1 HETATM 4 O O3 PO4 . . . I 2 -18.817 126.775 -6.697 1 117.27 ? O3 PO4 202 D 1 HETATM 5 O O4 PO4 . . . I 2 -17.422 128.138 -5.205 1 118 ? O4 PO4 202 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #