data_5LDT
#
_model_server_result.job_id            PCogFSZG-OApOrVnjwAO6A 
_model_server_result.datetime_utc      '2024-10-28 02:24:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ldt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":502}' 
#
_entry.id    5LDT 
#
_exptl.entry_id    5LDT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.438 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5LDT 
_cell.length_a            94.36 
_cell.length_b            99.33 
_cell.length_c            172.14 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LDT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 72 A GLY 72 1_555 G CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc2 A OD1 ASN 77 A ASN 77 1_555 G CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc3 A O ASP 120 A ASP 120 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc4 A OD2 ASP 120 A ASP 120 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc5 A O ASP 145 A ASP 145 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc6 A OD1 ASP 145 A ASP 145 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc7 A OE1 GLN 152 A GLN 152 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc8 A OD2 ASP 155 A ASP 155 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc9 A OD1 ASN 180 A ASN 180 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc10 A OE2 GLU 288 A GLU 288 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc11 E CA CA . A CA 502 1_555 B O GLY 72 B GLY 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc12 E CA CA . A CA 502 1_555 B OD1 ASN 77 B ASN 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc13 G CA CA . A CA 504 1_555 C O ASP 145 C ASP 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc14 G CA CA . A CA 504 1_555 C OD1 ASP 145 C ASP 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc15 G CA CA . A CA 504 1_555 C OD2 ASP 145 C ASP 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.056 ? 
metalc ? metalc16 G CA CA . A CA 504 1_555 C OD1 ASN 180 C ASN 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc17 B O ASP 120 B ASP 120 1_555 H CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc18 B OD2 ASP 120 B ASP 120 1_555 H CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc19 B O ASP 145 B ASP 145 1_555 I CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc20 B OD1 ASP 145 B ASP 145 1_555 I CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc21 B OE1 GLN 152 B GLN 152 1_555 H CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc22 B OD2 ASP 155 B ASP 155 1_555 H CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc23 B OD1 ASN 180 B ASN 180 1_555 I CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc24 B OE2 GLU 288 B GLU 288 1_555 H CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc25 H CA CA . B CA 501 1_555 N O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc26 I CA CA . B CA 502 1_555 C O GLY 72 C GLY 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc27 I CA CA . B CA 502 1_555 C OD1 ASN 77 C ASN 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc28 C O ASP 120 C ASP 120 1_555 K CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc29 C OD2 ASP 120 C ASP 120 1_555 K CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc30 C OE1 GLN 152 C GLN 152 1_555 K CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc31 C OD2 ASP 155 C ASP 155 1_555 K CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc32 C OE2 GLU 288 C GLU 288 1_555 K CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc33 K CA CA . C CA 501 1_555 O O HOH . C HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
#
_chem_comp.formula           'C16 H34 O5' 
_chem_comp.formula_weight    306.438 
_chem_comp.id                C8E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 C8E sing 70 n n 
C1 H11 C8E sing 71 n n 
C1 H12 C8E sing 72 n n 
C1 H13 C8E sing 73 n n 
C2 C3 C8E sing 74 n n 
C2 H21 C8E sing 75 n n 
C2 H22 C8E sing 76 n n 
C3 C4 C8E sing 77 n n 
C3 H31 C8E sing 78 n n 
C3 H32 C8E sing 79 n n 
C4 C5 C8E sing 80 n n 
C4 H41 C8E sing 81 n n 
C4 H42 C8E sing 82 n n 
C5 C6 C8E sing 83 n n 
C5 H51 C8E sing 84 n n 
C5 H52 C8E sing 85 n n 
C6 C7 C8E sing 86 n n 
C6 H61 C8E sing 87 n n 
C6 H62 C8E sing 88 n n 
C7 C8 C8E sing 89 n n 
C7 H71 C8E sing 90 n n 
C7 H72 C8E sing 91 n n 
C8 O9 C8E sing 92 n n 
C8 H81 C8E sing 93 n n 
C8 H82 C8E sing 94 n n 
O9 C10 C8E sing 95 n n 
C10 C11 C8E sing 96 n n 
C10 H101 C8E sing 97 n n 
C10 H102 C8E sing 98 n n 
C11 O12 C8E sing 99 n n 
C11 H111 C8E sing 100 n n 
C11 H112 C8E sing 101 n n 
O12 C13 C8E sing 102 n n 
C13 C14 C8E sing 103 n n 
C13 H131 C8E sing 104 n n 
C13 H132 C8E sing 105 n n 
C14 O15 C8E sing 106 n n 
C14 H141 C8E sing 107 n n 
C14 H142 C8E sing 108 n n 
O15 C16 C8E sing 109 n n 
C16 C17 C8E sing 110 n n 
C16 H161 C8E sing 111 n n 
C16 H162 C8E sing 112 n n 
C17 O18 C8E sing 113 n n 
C17 H171 C8E sing 114 n n 
C17 H172 C8E sing 115 n n 
O18 C19 C8E sing 116 n n 
C19 C20 C8E sing 117 n n 
C19 H191 C8E sing 118 n n 
C19 H192 C8E sing 119 n n 
C20 O21 C8E sing 120 n n 
C20 H201 C8E sing 121 n n 
C20 H202 C8E sing 122 n n 
O21 HO2 C8E sing 123 n n 
#
_atom_sites.entry_id                     5LDT 
_atom_sites.fract_transf_matrix[1][1]    0.010598 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010067 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005809 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 CA A 1 501 4 CA CA . 
E 2 CA A 1 502 8 CA CA . 
F 3 C8E A 1 503 1 C8E C8E . 
G 2 CA A 1 504 7 CA CA . 
H 2 CA B 1 501 2 CA CA . 
I 2 CA B 1 502 3 CA CA . 
J 3 C8E B 1 503 2 C8E C8E . 
K 2 CA C 1 501 6 CA CA . 
L 3 C8E C 1 502 3 C8E C8E . 
M 4 HOH A 1 601 13 HOH HOH . 
M 4 HOH A 2 602 7 HOH HOH . 
M 4 HOH A 3 603 23 HOH HOH . 
M 4 HOH A 4 604 11 HOH HOH . 
M 4 HOH A 5 605 10 HOH HOH . 
N 4 HOH B 1 601 1 HOH HOH . 
N 4 HOH B 2 602 20 HOH HOH . 
N 4 HOH B 3 603 4 HOH HOH . 
N 4 HOH B 4 604 9 HOH HOH . 
N 4 HOH B 5 605 2 HOH HOH . 
O 4 HOH C 1 601 3 HOH HOH . 
O 4 HOH C 2 602 12 HOH HOH . 
O 4 HOH C 3 603 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 C8E . . . L 3 -1.204 8.898 -12.182 1 36.65 ? O12 C8E 502 C 1 
HETATM 2 C C13 C8E . . . L 3 -1.797 7.607 -12.303 1 38.92 ? C13 C8E 502 C 1 
HETATM 3 C C14 C8E . . . L 3 -1.557 7.056 -13.704 1 39.61 ? C14 C8E 502 C 1 
HETATM 4 O O15 C8E . . . L 3 -2.5 6.02 -14.017 1 41.34 ? O15 C8E 502 C 1 
HETATM 5 C C16 C8E . . . L 3 -2.414 5.48 -15.361 1 41.65 ? C16 C8E 502 C 1 
HETATM 6 C C17 C8E . . . L 3 -3.775 5.323 -16.064 1 41.14 ? C17 C8E 502 C 1 
HETATM 7 O O18 C8E . . . L 3 -3.888 4.049 -16.719 1 41.98 ? O18 C8E 502 C 1 
HETATM 8 C C19 C8E . . . L 3 -4.479 4.05 -18.036 1 41.31 ? C19 C8E 502 C 1 
HETATM 9 C C20 C8E . . . L 3 -4.083 2.764 -18.775 1 40.75 ? C20 C8E 502 C 1 
HETATM 10 O O21 C8E . . . L 3 -5.191 1.914 -19.065 1 40.13 ? O21 C8E 502 C 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           10 
#