data_5LEA
#
_model_server_result.job_id            A5g1aqSjv9gZJnHhqeQFOg 
_model_server_result.datetime_utc      '2024-12-23 05:51:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lea 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5LEA 
#
_exptl.entry_id    5LEA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.1 
_cell.angle_gamma         90 
_cell.entry_id            5LEA 
_cell.length_a            62.41 
_cell.length_b            46.4 
_cell.length_c            63.08 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LEA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     5LEA 
_atom_sites.fract_transf_matrix[1][1]    0.016023 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006182 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021552 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016992 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MPD A 1 401 1 MPD MPD . 
C 2 MPD A 1 402 2 MPD MPD . 
D 3 HOH A 1 501 11 HOH HOH . 
D 3 HOH A 2 502 15 HOH HOH . 
D 3 HOH A 3 503 8 HOH HOH . 
D 3 HOH A 4 504 3 HOH HOH . 
D 3 HOH A 5 505 14 HOH HOH . 
D 3 HOH A 6 506 10 HOH HOH . 
D 3 HOH A 7 507 7 HOH HOH . 
D 3 HOH A 8 508 5 HOH HOH . 
D 3 HOH A 9 509 2 HOH HOH . 
D 3 HOH A 10 510 17 HOH HOH . 
D 3 HOH A 11 511 1 HOH HOH . 
D 3 HOH A 12 512 13 HOH HOH . 
D 3 HOH A 13 513 4 HOH HOH . 
D 3 HOH A 14 514 6 HOH HOH . 
D 3 HOH A 15 515 12 HOH HOH . 
D 3 HOH A 16 516 16 HOH HOH . 
D 3 HOH A 17 517 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 2 3.579 -5.933 4.297 1 92.56 ? C1 MPD 402 A 1 
HETATM 2 C C2 MPD . . . C 2 2.758 -6.988 3.558 1 93.48 ? C2 MPD 402 A 1 
HETATM 3 O O2 MPD . . . C 2 1.591 -7.286 4.364 1 92.8 ? O2 MPD 402 A 1 
HETATM 4 C CM MPD . . . C 2 2.269 -6.48 2.201 1 94.77 ? CM MPD 402 A 1 
HETATM 5 C C3 MPD . . . C 2 3.592 -8.254 3.357 1 93.7 ? C3 MPD 402 A 1 
HETATM 6 C C4 MPD . . . C 2 3.8 -9.035 4.654 1 91.93 ? C4 MPD 402 A 1 
HETATM 7 O O4 MPD . . . C 2 2.732 -9.94 4.82 1 96.98 ? O4 MPD 402 A 1 
HETATM 8 C C5 MPD . . . C 2 5.106 -9.821 4.656 1 84.77 ? C5 MPD 402 A 1 
HETATM 9 H H11 MPD . . . C 2 4.572 -6.329 4.511 1 111.07 ? H11 MPD 402 A 1 
HETATM 10 H H12 MPD . . . C 2 3.081 -5.675 5.232 1 111.07 ? H12 MPD 402 A 1 
HETATM 11 H H13 MPD . . . C 2 3.669 -5.042 3.676 1 111.07 ? H13 MPD 402 A 1 
HETATM 12 H HO2 MPD . . . C 2 1.594 -8.236 4.604 1 111.35 ? HO2 MPD 402 A 1 
HETATM 13 H HM1 MPD . . . C 2 2.632 -7.14 1.413 1 113.73 ? HM1 MPD 402 A 1 
HETATM 14 H HM2 MPD . . . C 2 2.649 -5.472 2.032 1 113.73 ? HM2 MPD 402 A 1 
HETATM 15 H HM3 MPD . . . C 2 1.18 -6.464 2.189 1 113.73 ? HM3 MPD 402 A 1 
HETATM 16 H H31 MPD . . . C 2 3.096 -8.896 2.629 1 112.45 ? H31 MPD 402 A 1 
HETATM 17 H H32 MPD . . . C 2 4.564 -7.979 2.946 1 112.45 ? H32 MPD 402 A 1 
HETATM 18 H H4 MPD . . . C 2 3.817 -8.33 5.486 1 110.31 ? H4 MPD 402 A 1 
HETATM 19 H HO4 MPD . . . C 2 2.746 -10.598 4.094 1 116.37 ? HO4 MPD 402 A 1 
HETATM 20 H H51 MPD . . . C 2 4.891 -10.882 4.784 1 101.72 ? H51 MPD 402 A 1 
HETATM 21 H H52 MPD . . . C 2 5.737 -9.477 5.476 1 101.72 ? H52 MPD 402 A 1 
HETATM 22 H H53 MPD . . . C 2 5.624 -9.668 3.709 1 101.72 ? H53 MPD 402 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           22 
#