data_5LEW # _model_server_result.job_id 8GUScSxAMt89vc9XHpBbwA _model_server_result.datetime_utc '2024-12-04 19:54:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1013}' # _entry.id 5LEW # _exptl.entry_id 5LEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LEW _cell.length_a 256.044 _cell.length_b 256.044 _cell.length_c 187.35 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 8 A HIS 14 1_555 C ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc2 A NE2 HIS 10 A HIS 16 1_555 C ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc3 A OD1 ASP 17 A ASP 23 1_555 D ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc4 A NE2 HIS 42 A HIS 48 1_555 D ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc5 A OE2 GLU 67 A GLU 73 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc6 A OE1 GLU 67 A GLU 73 1_555 C ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc7 A ND1 HIS 101 A HIS 107 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc8 A SG CYS 152 A CYS 158 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc9 A OD1 ASP 220 A ASP 226 1_555 C ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc10 A NE2 HIS 222 A HIS 228 1_555 D ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc11 C ZN ZN . A ZN 1002 1_555 O O HOH . A HOH 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc12 D ZN ZN . A ZN 1003 1_555 O O HOH . A HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 5LEW _atom_sites.fract_transf_matrix[1][1] 0.003906 _atom_sites.fract_transf_matrix[1][2] 0.002255 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005338 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1001 1 ZN ZN . C 2 ZN A 1 1002 2 ZN ZN . D 2 ZN A 1 1003 3 ZN ZN . E 3 SO4 A 1 1004 1 SO4 SO4 . F 3 SO4 A 1 1005 2 SO4 SO4 . G 3 SO4 A 1 1006 3 SO4 SO4 . H 3 SO4 A 1 1007 4 SO4 SO4 . I 3 SO4 A 1 1008 5 SO4 SO4 . J 3 SO4 A 1 1009 6 SO4 SO4 . K 3 SO4 A 1 1010 7 SO4 SO4 . L 3 SO4 A 1 1011 8 SO4 SO4 . M 3 SO4 A 1 1012 9 SO4 SO4 . N 4 EPE A 1 1013 1 EPE EPE . O 5 HOH A 1 1101 91 HOH HOH . O 5 HOH A 2 1102 81 HOH HOH . O 5 HOH A 3 1103 83 HOH HOH . O 5 HOH A 4 1104 71 HOH HOH . O 5 HOH A 5 1105 12 HOH HOH . O 5 HOH A 6 1106 96 HOH HOH . O 5 HOH A 7 1107 69 HOH HOH . O 5 HOH A 8 1108 21 HOH HOH . O 5 HOH A 9 1109 72 HOH HOH . O 5 HOH A 10 1110 76 HOH HOH . O 5 HOH A 11 1111 68 HOH HOH . O 5 HOH A 12 1112 61 HOH HOH . O 5 HOH A 13 1113 66 HOH HOH . O 5 HOH A 14 1114 95 HOH HOH . O 5 HOH A 15 1115 35 HOH HOH . O 5 HOH A 16 1116 24 HOH HOH . O 5 HOH A 17 1117 73 HOH HOH . O 5 HOH A 18 1118 14 HOH HOH . O 5 HOH A 19 1119 7 HOH HOH . O 5 HOH A 20 1120 93 HOH HOH . O 5 HOH A 21 1121 86 HOH HOH . O 5 HOH A 22 1122 4 HOH HOH . O 5 HOH A 23 1123 30 HOH HOH . O 5 HOH A 24 1124 90 HOH HOH . O 5 HOH A 25 1125 79 HOH HOH . O 5 HOH A 26 1126 56 HOH HOH . O 5 HOH A 27 1127 60 HOH HOH . O 5 HOH A 28 1128 13 HOH HOH . O 5 HOH A 29 1129 51 HOH HOH . O 5 HOH A 30 1130 3 HOH HOH . O 5 HOH A 31 1131 85 HOH HOH . O 5 HOH A 32 1132 87 HOH HOH . O 5 HOH A 33 1133 16 HOH HOH . O 5 HOH A 34 1134 65 HOH HOH . O 5 HOH A 35 1135 78 HOH HOH . O 5 HOH A 36 1136 5 HOH HOH . O 5 HOH A 37 1137 11 HOH HOH . O 5 HOH A 38 1138 92 HOH HOH . O 5 HOH A 39 1139 67 HOH HOH . O 5 HOH A 40 1140 89 HOH HOH . O 5 HOH A 41 1141 15 HOH HOH . O 5 HOH A 42 1142 45 HOH HOH . O 5 HOH A 43 1143 84 HOH HOH . O 5 HOH A 44 1144 2 HOH HOH . O 5 HOH A 45 1145 1 HOH HOH . O 5 HOH A 46 1146 9 HOH HOH . O 5 HOH A 47 1147 63 HOH HOH . O 5 HOH A 48 1148 57 HOH HOH . O 5 HOH A 49 1149 82 HOH HOH . O 5 HOH A 50 1150 19 HOH HOH . O 5 HOH A 51 1151 74 HOH HOH . O 5 HOH A 52 1152 40 HOH HOH . O 5 HOH A 53 1153 20 HOH HOH . O 5 HOH A 54 1154 10 HOH HOH . O 5 HOH A 55 1155 94 HOH HOH . O 5 HOH A 56 1156 46 HOH HOH . O 5 HOH A 57 1157 80 HOH HOH . O 5 HOH A 58 1158 44 HOH HOH . O 5 HOH A 59 1159 50 HOH HOH . O 5 HOH A 60 1160 88 HOH HOH . O 5 HOH A 61 1161 49 HOH HOH . O 5 HOH A 62 1162 25 HOH HOH . O 5 HOH A 63 1163 18 HOH HOH . O 5 HOH A 64 1164 32 HOH HOH . O 5 HOH A 65 1165 17 HOH HOH . O 5 HOH A 66 1166 58 HOH HOH . O 5 HOH A 67 1167 23 HOH HOH . O 5 HOH A 68 1168 22 HOH HOH . O 5 HOH A 69 1169 59 HOH HOH . O 5 HOH A 70 1170 75 HOH HOH . O 5 HOH A 71 1171 55 HOH HOH . O 5 HOH A 72 1172 36 HOH HOH . O 5 HOH A 73 1173 27 HOH HOH . O 5 HOH A 74 1174 33 HOH HOH . O 5 HOH A 75 1175 29 HOH HOH . O 5 HOH A 76 1176 41 HOH HOH . O 5 HOH A 77 1177 34 HOH HOH . O 5 HOH A 78 1178 53 HOH HOH . O 5 HOH A 79 1179 26 HOH HOH . O 5 HOH A 80 1180 77 HOH HOH . O 5 HOH A 81 1181 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . N 4 -10.175 36.59 68.385 1 102.47 ? N1 EPE 1013 A 1 HETATM 2 C C2 EPE . . . N 4 -8.922 36.244 67.626 1 80.78 ? C2 EPE 1013 A 1 HETATM 3 C C3 EPE . . . N 4 -8.361 37.363 66.732 1 69.53 ? C3 EPE 1013 A 1 HETATM 4 N N4 EPE . . . N 4 -9.54 37.734 65.934 1 80.99 ? N4 EPE 1013 A 1 HETATM 5 C C5 EPE . . . N 4 -10.536 38.435 66.806 1 81.96 ? C5 EPE 1013 A 1 HETATM 6 C C6 EPE . . . N 4 -11.207 37.296 67.562 1 92.54 ? C6 EPE 1013 A 1 HETATM 7 C C7 EPE . . . N 4 -9.298 38.278 64.543 1 100.96 ? C7 EPE 1013 A 1 HETATM 8 C C8 EPE . . . N 4 -10.343 37.865 63.449 1 85.33 ? C8 EPE 1013 A 1 HETATM 9 O O8 EPE . . . N 4 -9.874 38.187 62.109 1 78.28 ? O8 EPE 1013 A 1 HETATM 10 C C9 EPE . . . N 4 -10.76 35.432 69.137 1 103.63 ? C9 EPE 1013 A 1 HETATM 11 C C10 EPE . . . N 4 -11.306 35.891 70.511 1 113.83 ? C10 EPE 1013 A 1 HETATM 12 S S EPE . . . N 4 -12.897 36.356 70.416 1 102.98 ? S EPE 1013 A 1 HETATM 13 O O1S EPE . . . N 4 -13.316 35.391 69.392 1 116.24 ? O1S EPE 1013 A 1 HETATM 14 O O2S EPE . . . N 4 -13.145 37.762 69.957 1 92.37 ? O2S EPE 1013 A 1 HETATM 15 O O3S EPE . . . N 4 -13.601 36.173 71.665 1 89.09 ? O3S EPE 1013 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #