data_5LFA
#
_model_server_result.job_id            w5g3X071pckFW4I9sZerbg 
_model_server_result.datetime_utc      '2024-11-15 03:58:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lfa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":604}' 
#
_entry.id    5LFA 
#
_exptl.entry_id    5LFA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5LFA 
_cell.length_a            56.183 
_cell.length_b            94.441 
_cell.length_c            103.579 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LFA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 350 A CYS 350 1_555 D FE2 SF4 . A SF4 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc2 A SG CYS 438 A CYS 438 1_555 D FE1 SF4 . A SF4 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc3 A SG CYS 441 A CYS 441 1_555 D FE3 SF4 . A SF4 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc4 A SG CYS 454 A CYS 454 1_555 D FE4 SF4 . A SF4 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 262 n n 
C1 C2 GOL sing 263 n n 
C1 H11 GOL sing 264 n n 
C1 H12 GOL sing 265 n n 
O1 HO1 GOL sing 266 n n 
C2 O2 GOL sing 267 n n 
C2 C3 GOL sing 268 n n 
C2 H2 GOL sing 269 n n 
O2 HO2 GOL sing 270 n n 
C3 O3 GOL sing 271 n n 
C3 H31 GOL sing 272 n n 
C3 H32 GOL sing 273 n n 
O3 HO3 GOL sing 274 n n 
#
_atom_sites.entry_id                     5LFA 
_atom_sites.fract_transf_matrix[1][1]    0.017799 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010589 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009654 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 601 1 FAD FAD . 
C 3 DLZ A 1 602 1 DLZ DLZ . 
D 4 SF4 A 1 603 1 SF4 SF4 . 
E 5 GOL A 1 604 1 GOL GOL . 
F 5 GOL A 1 605 3 GOL GOL . 
G 5 GOL A 1 606 4 GOL GOL . 
H 6 HOH A 1 701 110 HOH HOH . 
H 6 HOH A 2 702 67 HOH HOH . 
H 6 HOH A 3 703 27 HOH HOH . 
H 6 HOH A 4 704 16 HOH HOH . 
H 6 HOH A 5 705 61 HOH HOH . 
H 6 HOH A 6 706 37 HOH HOH . 
H 6 HOH A 7 707 39 HOH HOH . 
H 6 HOH A 8 708 34 HOH HOH . 
H 6 HOH A 9 709 32 HOH HOH . 
H 6 HOH A 10 710 116 HOH HOH . 
H 6 HOH A 11 711 108 HOH HOH . 
H 6 HOH A 12 712 87 HOH HOH . 
H 6 HOH A 13 713 23 HOH HOH . 
H 6 HOH A 14 714 72 HOH HOH . 
H 6 HOH A 15 715 26 HOH HOH . 
H 6 HOH A 16 716 46 HOH HOH . 
H 6 HOH A 17 717 111 HOH HOH . 
H 6 HOH A 18 718 80 HOH HOH . 
H 6 HOH A 19 719 11 HOH HOH . 
H 6 HOH A 20 720 49 HOH HOH . 
H 6 HOH A 21 721 126 HOH HOH . 
H 6 HOH A 22 722 74 HOH HOH . 
H 6 HOH A 23 723 109 HOH HOH . 
H 6 HOH A 24 724 59 HOH HOH . 
H 6 HOH A 25 725 17 HOH HOH . 
H 6 HOH A 26 726 5 HOH HOH . 
H 6 HOH A 27 727 101 HOH HOH . 
H 6 HOH A 28 728 107 HOH HOH . 
H 6 HOH A 29 729 35 HOH HOH . 
H 6 HOH A 30 730 2 HOH HOH . 
H 6 HOH A 31 731 70 HOH HOH . 
H 6 HOH A 32 732 12 HOH HOH . 
H 6 HOH A 33 733 115 HOH HOH . 
H 6 HOH A 34 734 66 HOH HOH . 
H 6 HOH A 35 735 58 HOH HOH . 
H 6 HOH A 36 736 94 HOH HOH . 
H 6 HOH A 37 737 36 HOH HOH . 
H 6 HOH A 38 738 22 HOH HOH . 
H 6 HOH A 39 739 114 HOH HOH . 
H 6 HOH A 40 740 117 HOH HOH . 
H 6 HOH A 41 741 18 HOH HOH . 
H 6 HOH A 42 742 21 HOH HOH . 
H 6 HOH A 43 743 10 HOH HOH . 
H 6 HOH A 44 744 63 HOH HOH . 
H 6 HOH A 45 745 1 HOH HOH . 
H 6 HOH A 46 746 92 HOH HOH . 
H 6 HOH A 47 747 24 HOH HOH . 
H 6 HOH A 48 748 77 HOH HOH . 
H 6 HOH A 49 749 100 HOH HOH . 
H 6 HOH A 50 750 50 HOH HOH . 
H 6 HOH A 51 751 31 HOH HOH . 
H 6 HOH A 52 752 62 HOH HOH . 
H 6 HOH A 53 753 75 HOH HOH . 
H 6 HOH A 54 754 85 HOH HOH . 
H 6 HOH A 55 755 88 HOH HOH . 
H 6 HOH A 56 756 14 HOH HOH . 
H 6 HOH A 57 757 79 HOH HOH . 
H 6 HOH A 58 758 73 HOH HOH . 
H 6 HOH A 59 759 19 HOH HOH . 
H 6 HOH A 60 760 40 HOH HOH . 
H 6 HOH A 61 761 53 HOH HOH . 
H 6 HOH A 62 762 57 HOH HOH . 
H 6 HOH A 63 763 54 HOH HOH . 
H 6 HOH A 64 764 121 HOH HOH . 
H 6 HOH A 65 765 45 HOH HOH . 
H 6 HOH A 66 766 78 HOH HOH . 
H 6 HOH A 67 767 13 HOH HOH . 
H 6 HOH A 68 768 60 HOH HOH . 
H 6 HOH A 69 769 103 HOH HOH . 
H 6 HOH A 70 770 65 HOH HOH . 
H 6 HOH A 71 771 20 HOH HOH . 
H 6 HOH A 72 772 113 HOH HOH . 
H 6 HOH A 73 773 112 HOH HOH . 
H 6 HOH A 74 774 52 HOH HOH . 
H 6 HOH A 75 775 102 HOH HOH . 
H 6 HOH A 76 776 76 HOH HOH . 
H 6 HOH A 77 777 25 HOH HOH . 
H 6 HOH A 78 778 51 HOH HOH . 
H 6 HOH A 79 779 56 HOH HOH . 
H 6 HOH A 80 780 91 HOH HOH . 
H 6 HOH A 81 781 83 HOH HOH . 
H 6 HOH A 82 782 71 HOH HOH . 
H 6 HOH A 83 783 124 HOH HOH . 
H 6 HOH A 84 784 125 HOH HOH . 
H 6 HOH A 85 785 106 HOH HOH . 
H 6 HOH A 86 786 64 HOH HOH . 
H 6 HOH A 87 787 29 HOH HOH . 
H 6 HOH A 88 788 33 HOH HOH . 
H 6 HOH A 89 789 86 HOH HOH . 
H 6 HOH A 90 790 42 HOH HOH . 
H 6 HOH A 91 791 118 HOH HOH . 
H 6 HOH A 92 792 15 HOH HOH . 
H 6 HOH A 93 793 68 HOH HOH . 
H 6 HOH A 94 794 93 HOH HOH . 
H 6 HOH A 95 795 55 HOH HOH . 
H 6 HOH A 96 796 47 HOH HOH . 
H 6 HOH A 97 797 84 HOH HOH . 
H 6 HOH A 98 798 44 HOH HOH . 
H 6 HOH A 99 799 6 HOH HOH . 
H 6 HOH A 100 800 99 HOH HOH . 
H 6 HOH A 101 801 81 HOH HOH . 
H 6 HOH A 102 802 48 HOH HOH . 
H 6 HOH A 103 803 69 HOH HOH . 
H 6 HOH A 104 804 123 HOH HOH . 
H 6 HOH A 105 805 95 HOH HOH . 
H 6 HOH A 106 806 105 HOH HOH . 
H 6 HOH A 107 807 122 HOH HOH . 
H 6 HOH A 108 808 82 HOH HOH . 
H 6 HOH A 109 809 119 HOH HOH . 
H 6 HOH A 110 810 97 HOH HOH . 
H 6 HOH A 111 811 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 -8.185 -9.557 -4.576 1 42.78 ? C1 GOL 604 A 1 
HETATM 2 O O1 GOL . . . E 5 -7.411 -10.579 -3.922 1 40.99 ? O1 GOL 604 A 1 
HETATM 3 C C2 GOL . . . E 5 -7.305 -8.628 -5.445 1 42.98 ? C2 GOL 604 A 1 
HETATM 4 O O2 GOL . . . E 5 -6.636 -7.638 -4.635 1 40.76 ? O2 GOL 604 A 1 
HETATM 5 C C3 GOL . . . E 5 -6.278 -9.426 -6.269 1 43.32 ? C3 GOL 604 A 1 
HETATM 6 O O3 GOL . . . E 5 -6.012 -8.754 -7.514 1 47.49 ? O3 GOL 604 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#