data_5LFB
#
_model_server_result.job_id            CX82hGGnyyQn6cI8Pa1aWQ 
_model_server_result.datetime_utc      '2024-10-19 11:39:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lfb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KD","auth_seq_id":101}' 
#
_entry.id    5LFB 
#
_exptl.entry_id    5LFB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              720.954 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{S})-3-[[(2~{R})-2,3-bis(oxidanyl)propoxy]-oxidanyl-phosphoryl]oxy-2-hexadec-9-enoyloxy-propyl] hexadecanoate' 
_entity.pdbx_number_of_molecules    75 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5LFB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LFB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    75-meric 
_pdbx_struct_assembly.oligomeric_count      75 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE,LE,ME,NE,OE,PE,QE,RE,SE,TE 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 XB N N 
? 2 YB N N 
? 2 ZB N N 
? 2 AC N N 
? 2 BC N N 
? 2 CC N N 
? 2 DC N N 
? 2 EC N N 
? 2 FC N N 
? 2 GC N N 
? 2 HC N N 
? 2 IC N N 
? 2 JC N N 
? 2 KC N N 
? 2 LC N N 
? 2 MC N N 
? 2 NC N N 
? 2 OC N N 
? 2 PC N N 
? 2 QC N N 
? 2 RC N N 
? 2 SC N N 
? 2 TC N N 
? 2 UC N N 
? 2 VC N N 
? 2 WC N N 
? 2 XC N N 
? 2 YC N N 
? 2 ZC N N 
? 2 AD N N 
? 2 BD N N 
? 2 CD N N 
? 2 DD N N 
? 2 ED N N 
? 2 FD N N 
? 2 GD N N 
? 2 HD N N 
? 2 ID N N 
? 2 JD N N 
? 2 KD N N 
? 2 LD N N 
? 2 MD N N 
? 2 ND N N 
? 2 OD N N 
? 2 PD N N 
? 2 QD N N 
? 2 RD N N 
? 2 SD N N 
? 2 TD N N 
? 2 UD N N 
? 2 VD N N 
? 2 WD N N 
? 2 XD N N 
? 2 YD N N 
? 2 ZD N N 
? 2 AE N N 
? 2 BE N N 
? 2 CE N N 
? 2 DE N N 
? 2 EE N N 
? 2 FE N N 
? 2 GE N N 
? 2 HE N N 
? 2 IE N N 
? 2 JE N N 
? 2 KE N N 
? 2 LE N N 
? 2 ME N N 
? 2 NE N N 
? 2 OE N N 
? 2 PE N N 
? 2 QE N N 
? 2 RE N N 
? 2 SE N N 
? 2 TE N N 
#
_chem_comp.formula           'C38 H73 O10 P' 
_chem_comp.formula_weight    720.954 
_chem_comp.id                6V6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{S})-3-[[(2~{R})-2,3-bis(oxidanyl)propoxy]-oxidanyl-phosphoryl]oxy-2-hexadec-9-enoyloxy-propyl] hexadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C5 6V6 sing 1 n n 
C5 C4 6V6 sing 2 n n 
C4 C3 6V6 sing 3 n n 
C4 O5 6V6 sing 4 n n 
C3 O4 6V6 sing 5 n n 
C1 C2 6V6 sing 6 n n 
O1 C2 6V6 sing 7 n n 
O1 P1 6V6 sing 8 n n 
O4 P1 6V6 sing 9 n n 
P1 O3 6V6 doub 10 n n 
P1 O2 6V6 sing 11 n n 
C2 H1 6V6 sing 12 n n 
C2 H2 6V6 sing 13 n n 
C3 H3 6V6 sing 14 n n 
C3 H4 6V6 sing 15 n n 
C4 H5 6V6 sing 16 n n 
C5 H6 6V6 sing 17 n n 
C5 H7 6V6 sing 18 n n 
O2 H11 6V6 sing 19 n n 
O5 H12 6V6 sing 20 n n 
O6 H13 6V6 sing 21 n n 
C1 C6 6V6 sing 22 n n 
C1 O7 6V6 sing 23 n n 
C6 O9 6V6 sing 24 n n 
O9 C8 6V6 sing 25 n n 
C8 C9 6V6 sing 26 n n 
C9 C10 6V6 sing 27 n n 
C10 C11 6V6 sing 28 n n 
C11 C12 6V6 sing 29 n n 
C12 C13 6V6 sing 30 n n 
C13 C14 6V6 sing 31 n n 
C14 C15 6V6 sing 32 n n 
C15 C16 6V6 sing 33 n n 
C16 C17 6V6 sing 34 n n 
C17 C18 6V6 sing 35 n n 
C18 C19 6V6 sing 36 n n 
C19 C20 6V6 sing 37 n n 
C20 C21 6V6 sing 38 n n 
C21 C22 6V6 sing 39 n n 
C22 C23 6V6 sing 40 n n 
C8 O8 6V6 doub 41 n n 
O7 C24 6V6 sing 42 n n 
C24 O10 6V6 doub 43 n n 
C24 C25 6V6 sing 44 n n 
C25 C26 6V6 sing 45 n n 
C26 C27 6V6 sing 46 n n 
C27 C28 6V6 sing 47 n n 
C28 C29 6V6 sing 48 n n 
C29 C30 6V6 sing 49 n n 
C30 C31 6V6 sing 50 n n 
C31 C32 6V6 sing 51 n n 
C32 C33 6V6 doub 52 n n 
C33 C34 6V6 sing 53 n n 
C34 C35 6V6 sing 54 n n 
C35 C36 6V6 sing 55 n n 
C36 C37 6V6 sing 56 n n 
C37 C38 6V6 sing 57 n n 
C38 C39 6V6 sing 58 n n 
C6 H9 6V6 sing 59 n n 
C6 H10 6V6 sing 60 n n 
C9 H16 6V6 sing 61 n n 
C9 H17 6V6 sing 62 n n 
C10 H18 6V6 sing 63 n n 
C10 H19 6V6 sing 64 n n 
C11 H20 6V6 sing 65 n n 
C11 H21 6V6 sing 66 n n 
C12 H22 6V6 sing 67 n n 
C12 H23 6V6 sing 68 n n 
C13 H24 6V6 sing 69 n n 
C13 H25 6V6 sing 70 n n 
C14 H26 6V6 sing 71 n n 
C14 H27 6V6 sing 72 n n 
C15 H28 6V6 sing 73 n n 
C15 H29 6V6 sing 74 n n 
C16 H30 6V6 sing 75 n n 
C16 H31 6V6 sing 76 n n 
C17 H32 6V6 sing 77 n n 
C17 H33 6V6 sing 78 n n 
C18 H34 6V6 sing 79 n n 
C18 H35 6V6 sing 80 n n 
C19 H36 6V6 sing 81 n n 
C19 H37 6V6 sing 82 n n 
C20 H38 6V6 sing 83 n n 
C20 H39 6V6 sing 84 n n 
C21 H40 6V6 sing 85 n n 
C21 H41 6V6 sing 86 n n 
C22 H42 6V6 sing 87 n n 
C22 H43 6V6 sing 88 n n 
C23 H44 6V6 sing 89 n n 
C23 H45 6V6 sing 90 n n 
C23 H46 6V6 sing 91 n n 
C25 H47 6V6 sing 92 n n 
C25 H48 6V6 sing 93 n n 
C26 H49 6V6 sing 94 n n 
C26 H50 6V6 sing 95 n n 
C27 H51 6V6 sing 96 n n 
C27 H52 6V6 sing 97 n n 
C28 H53 6V6 sing 98 n n 
C28 H54 6V6 sing 99 n n 
C29 H55 6V6 sing 100 n n 
C29 H56 6V6 sing 101 n n 
C30 H57 6V6 sing 102 n n 
C30 H58 6V6 sing 103 n n 
C31 H59 6V6 sing 104 n n 
C31 H60 6V6 sing 105 n n 
C32 H61 6V6 sing 106 n n 
C33 H62 6V6 sing 107 n n 
C34 H63 6V6 sing 108 n n 
C34 H64 6V6 sing 109 n n 
C35 H65 6V6 sing 110 n n 
C35 H66 6V6 sing 111 n n 
C36 H67 6V6 sing 112 n n 
C36 H68 6V6 sing 113 n n 
C37 H69 6V6 sing 114 n n 
C37 H70 6V6 sing 115 n n 
C38 H71 6V6 sing 116 n n 
C38 H72 6V6 sing 117 n n 
C39 H73 6V6 sing 118 n n 
C39 H74 6V6 sing 119 n n 
C39 H75 6V6 sing 120 n n 
C1 H8 6V6 sing 121 n n 
#
_atom_sites.entry_id                     5LFB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
XB 2 6V6 1A 1 101 101 6V6 6V6 . 
YB 2 6V6 1B 1 101 101 6V6 6V6 . 
ZB 2 6V6 1C 1 101 101 6V6 6V6 . 
AC 2 6V6 1D 1 101 101 6V6 6V6 . 
BC 2 6V6 1E 1 101 101 6V6 6V6 . 
CC 2 6V6 1F 1 101 101 6V6 6V6 . 
DC 2 6V6 1G 1 101 101 6V6 6V6 . 
EC 2 6V6 1H 1 101 101 6V6 6V6 . 
FC 2 6V6 1I 1 101 101 6V6 6V6 . 
GC 2 6V6 1J 1 101 101 6V6 6V6 . 
HC 2 6V6 1K 1 101 101 6V6 6V6 . 
IC 2 6V6 1L 1 101 101 6V6 6V6 . 
JC 2 6V6 1M 1 101 101 6V6 6V6 . 
KC 2 6V6 1N 1 101 101 6V6 6V6 . 
LC 2 6V6 1O 1 101 101 6V6 6V6 . 
MC 2 6V6 2A 1 101 101 6V6 6V6 . 
NC 2 6V6 2B 1 101 101 6V6 6V6 . 
OC 2 6V6 2C 1 101 101 6V6 6V6 . 
PC 2 6V6 2D 1 101 101 6V6 6V6 . 
QC 2 6V6 2E 1 101 101 6V6 6V6 . 
RC 2 6V6 2F 1 101 101 6V6 6V6 . 
SC 2 6V6 2G 1 101 101 6V6 6V6 . 
TC 2 6V6 2H 1 101 101 6V6 6V6 . 
UC 2 6V6 2I 1 101 101 6V6 6V6 . 
VC 2 6V6 2J 1 101 101 6V6 6V6 . 
WC 2 6V6 2K 1 101 101 6V6 6V6 . 
XC 2 6V6 2L 1 101 101 6V6 6V6 . 
YC 2 6V6 2M 1 101 101 6V6 6V6 . 
ZC 2 6V6 2N 1 101 101 6V6 6V6 . 
AD 2 6V6 2O 1 101 101 6V6 6V6 . 
BD 2 6V6 3A 1 101 101 6V6 6V6 . 
CD 2 6V6 3B 1 101 101 6V6 6V6 . 
DD 2 6V6 3C 1 101 101 6V6 6V6 . 
ED 2 6V6 3D 1 101 101 6V6 6V6 . 
FD 2 6V6 3E 1 101 101 6V6 6V6 . 
GD 2 6V6 3F 1 101 101 6V6 6V6 . 
HD 2 6V6 3G 1 101 101 6V6 6V6 . 
ID 2 6V6 3H 1 101 101 6V6 6V6 . 
JD 2 6V6 3I 1 101 101 6V6 6V6 . 
KD 2 6V6 3J 1 101 101 6V6 6V6 . 
LD 2 6V6 3K 1 101 101 6V6 6V6 . 
MD 2 6V6 3L 1 101 101 6V6 6V6 . 
ND 2 6V6 3M 1 101 101 6V6 6V6 . 
OD 2 6V6 3N 1 101 101 6V6 6V6 . 
PD 2 6V6 3O 1 101 101 6V6 6V6 . 
QD 2 6V6 4A 1 101 101 6V6 6V6 . 
RD 2 6V6 4B 1 101 101 6V6 6V6 . 
SD 2 6V6 4C 1 101 101 6V6 6V6 . 
TD 2 6V6 4D 1 101 101 6V6 6V6 . 
UD 2 6V6 4E 1 101 101 6V6 6V6 . 
VD 2 6V6 4F 1 101 101 6V6 6V6 . 
WD 2 6V6 4G 1 101 101 6V6 6V6 . 
XD 2 6V6 4H 1 101 101 6V6 6V6 . 
YD 2 6V6 4I 1 101 101 6V6 6V6 . 
ZD 2 6V6 4J 1 101 101 6V6 6V6 . 
AE 2 6V6 4K 1 101 101 6V6 6V6 . 
BE 2 6V6 4L 1 101 101 6V6 6V6 . 
CE 2 6V6 4M 1 101 101 6V6 6V6 . 
DE 2 6V6 4N 1 101 101 6V6 6V6 . 
EE 2 6V6 4O 1 101 101 6V6 6V6 . 
FE 2 6V6 5A 1 101 101 6V6 6V6 . 
GE 2 6V6 5B 1 101 101 6V6 6V6 . 
HE 2 6V6 5C 1 101 101 6V6 6V6 . 
IE 2 6V6 5D 1 101 101 6V6 6V6 . 
JE 2 6V6 5E 1 101 101 6V6 6V6 . 
KE 2 6V6 5F 1 101 101 6V6 6V6 . 
LE 2 6V6 5G 1 101 101 6V6 6V6 . 
ME 2 6V6 5H 1 101 101 6V6 6V6 . 
NE 2 6V6 5I 1 101 101 6V6 6V6 . 
OE 2 6V6 5J 1 101 101 6V6 6V6 . 
PE 2 6V6 5K 1 101 101 6V6 6V6 . 
QE 2 6V6 5L 1 101 101 6V6 6V6 . 
RE 2 6V6 5M 1 101 101 6V6 6V6 . 
SE 2 6V6 5N 1 101 101 6V6 6V6 . 
TE 2 6V6 5O 1 101 101 6V6 6V6 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 6V6 . . . KD 2 89.861 68.388 166.71 1 20 ? C2 6V6 101 3J 1 
HETATM 2 C C3 6V6 . . . KD 2 85.904 69.282 165.144 1 20 ? C3 6V6 101 3J 1 
HETATM 3 O O3 6V6 . . . KD 2 86.971 68.408 167.827 1 20 ? O3 6V6 101 3J 1 
HETATM 4 C C4 6V6 . . . KD 2 84.619 69.872 164.619 1 20 ? C4 6V6 101 3J 1 
HETATM 5 C C5 6V6 . . . KD 2 83.994 69.044 163.52 1 20 ? C5 6V6 101 3J 1 
HETATM 6 P P1 6V6 . . . KD 2 87.557 69.585 167.143 1 20 ? P1 6V6 101 3J 1 
HETATM 7 C C1 6V6 . . . KD 2 90.749 67.937 165.626 1 20 ? C1 6V6 101 3J 1 
HETATM 8 O O1 6V6 . . . KD 2 88.694 69.046 166.148 1 20 ? O1 6V6 101 3J 1 
HETATM 9 O O2 6V6 . . . KD 2 88.112 70.697 167.951 1 20 -1 O2 6V6 101 3J 1 
HETATM 10 O O4 6V6 . . . KD 2 86.44 70.158 166.144 1 20 ? O4 6V6 101 3J 1 
HETATM 11 O O5 6V6 . . . KD 2 83.705 70.02 165.702 1 20 ? O5 6V6 101 3J 1 
HETATM 12 O O6 6V6 . . . KD 2 82.787 69.632 163.043 1 20 ? O6 6V6 101 3J 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#