data_5LFO # _model_server_result.job_id 2dWTxwDSNvuZDbuGfMMlpg _model_server_result.datetime_utc '2024-11-14 22:59:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lfo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1803}' # _entry.id 5LFO # _exptl.entry_id 5LFO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LFO _cell.length_a 122.292 _cell.length_b 122.292 _cell.length_c 54.862 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LFO _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 220 n n C1 C2 GOL sing 221 n n C1 H11 GOL sing 222 n n C1 H12 GOL sing 223 n n O1 HO1 GOL sing 224 n n C2 O2 GOL sing 225 n n C2 C3 GOL sing 226 n n C2 H2 GOL sing 227 n n O2 HO2 GOL sing 228 n n C3 O3 GOL sing 229 n n C3 H31 GOL sing 230 n n C3 H32 GOL sing 231 n n O3 HO3 GOL sing 232 n n # _atom_sites.entry_id 5LFO _atom_sites.fract_transf_matrix[1][1] 0.008177 _atom_sites.fract_transf_matrix[1][2] 0.004721 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 1801 1801 FAD FAD . C 3 SP5 A 1 1802 1 SP5 INH . D 4 GOL A 1 1803 1 GOL GOL . E 5 HOH A 1 1901 169 HOH HOH . E 5 HOH A 2 1902 28 HOH HOH . E 5 HOH A 3 1903 129 HOH HOH . E 5 HOH A 4 1904 61 HOH HOH . E 5 HOH A 5 1905 118 HOH HOH . E 5 HOH A 6 1906 46 HOH HOH . E 5 HOH A 7 1907 190 HOH HOH . E 5 HOH A 8 1908 191 HOH HOH . E 5 HOH A 9 1909 292 HOH HOH . E 5 HOH A 10 1910 130 HOH HOH . E 5 HOH A 11 1911 151 HOH HOH . E 5 HOH A 12 1912 57 HOH HOH . E 5 HOH A 13 1913 59 HOH HOH . E 5 HOH A 14 1914 150 HOH HOH . E 5 HOH A 15 1915 248 HOH HOH . E 5 HOH A 16 1916 106 HOH HOH . E 5 HOH A 17 1917 145 HOH HOH . E 5 HOH A 18 1918 201 HOH HOH . E 5 HOH A 19 1919 243 HOH HOH . E 5 HOH A 20 1920 38 HOH HOH . E 5 HOH A 21 1921 60 HOH HOH . E 5 HOH A 22 1922 49 HOH HOH . E 5 HOH A 23 1923 242 HOH HOH . E 5 HOH A 24 1924 275 HOH HOH . E 5 HOH A 25 1925 225 HOH HOH . E 5 HOH A 26 1926 210 HOH HOH . E 5 HOH A 27 1927 175 HOH HOH . E 5 HOH A 28 1928 279 HOH HOH . E 5 HOH A 29 1929 27 HOH HOH . E 5 HOH A 30 1930 45 HOH HOH . E 5 HOH A 31 1931 194 HOH HOH . E 5 HOH A 32 1932 67 HOH HOH . E 5 HOH A 33 1933 186 HOH HOH . E 5 HOH A 34 1934 227 HOH HOH . E 5 HOH A 35 1935 68 HOH HOH . E 5 HOH A 36 1936 64 HOH HOH . E 5 HOH A 37 1937 5 HOH HOH . E 5 HOH A 38 1938 51 HOH HOH . E 5 HOH A 39 1939 197 HOH HOH . E 5 HOH A 40 1940 155 HOH HOH . E 5 HOH A 41 1941 2 HOH HOH . E 5 HOH A 42 1942 189 HOH HOH . E 5 HOH A 43 1943 70 HOH HOH . E 5 HOH A 44 1944 258 HOH HOH . E 5 HOH A 45 1945 276 HOH HOH . E 5 HOH A 46 1946 66 HOH HOH . E 5 HOH A 47 1947 229 HOH HOH . E 5 HOH A 48 1948 109 HOH HOH . E 5 HOH A 49 1949 43 HOH HOH . E 5 HOH A 50 1950 222 HOH HOH . E 5 HOH A 51 1951 255 HOH HOH . E 5 HOH A 52 1952 91 HOH HOH . E 5 HOH A 53 1953 18 HOH HOH . E 5 HOH A 54 1954 254 HOH HOH . E 5 HOH A 55 1955 140 HOH HOH . E 5 HOH A 56 1956 207 HOH HOH . E 5 HOH A 57 1957 226 HOH HOH . E 5 HOH A 58 1958 32 HOH HOH . E 5 HOH A 59 1959 33 HOH HOH . E 5 HOH A 60 1960 141 HOH HOH . E 5 HOH A 61 1961 250 HOH HOH . E 5 HOH A 62 1962 116 HOH HOH . E 5 HOH A 63 1963 289 HOH HOH . E 5 HOH A 64 1964 196 HOH HOH . E 5 HOH A 65 1965 16 HOH HOH . E 5 HOH A 66 1966 85 HOH HOH . E 5 HOH A 67 1967 246 HOH HOH . E 5 HOH A 68 1968 281 HOH HOH . E 5 HOH A 69 1969 4 HOH HOH . E 5 HOH A 70 1970 122 HOH HOH . E 5 HOH A 71 1971 15 HOH HOH . E 5 HOH A 72 1972 232 HOH HOH . E 5 HOH A 73 1973 112 HOH HOH . E 5 HOH A 74 1974 159 HOH HOH . E 5 HOH A 75 1975 257 HOH HOH . E 5 HOH A 76 1976 40 HOH HOH . E 5 HOH A 77 1977 14 HOH HOH . E 5 HOH A 78 1978 200 HOH HOH . E 5 HOH A 79 1979 20 HOH HOH . E 5 HOH A 80 1980 193 HOH HOH . E 5 HOH A 81 1981 231 HOH HOH . E 5 HOH A 82 1982 244 HOH HOH . E 5 HOH A 83 1983 166 HOH HOH . E 5 HOH A 84 1984 12 HOH HOH . E 5 HOH A 85 1985 247 HOH HOH . E 5 HOH A 86 1986 48 HOH HOH . E 5 HOH A 87 1987 44 HOH HOH . E 5 HOH A 88 1988 127 HOH HOH . E 5 HOH A 89 1989 195 HOH HOH . E 5 HOH A 90 1990 131 HOH HOH . E 5 HOH A 91 1991 86 HOH HOH . E 5 HOH A 92 1992 84 HOH HOH . E 5 HOH A 93 1993 77 HOH HOH . E 5 HOH A 94 1994 223 HOH HOH . E 5 HOH A 95 1995 173 HOH HOH . E 5 HOH A 96 1996 56 HOH HOH . E 5 HOH A 97 1997 238 HOH HOH . E 5 HOH A 98 1998 146 HOH HOH . E 5 HOH A 99 1999 119 HOH HOH . E 5 HOH A 100 2000 138 HOH HOH . E 5 HOH A 101 2001 108 HOH HOH . E 5 HOH A 102 2002 101 HOH HOH . E 5 HOH A 103 2003 93 HOH HOH . E 5 HOH A 104 2004 55 HOH HOH . E 5 HOH A 105 2005 114 HOH HOH . E 5 HOH A 106 2006 39 HOH HOH . E 5 HOH A 107 2007 89 HOH HOH . E 5 HOH A 108 2008 23 HOH HOH . E 5 HOH A 109 2009 137 HOH HOH . E 5 HOH A 110 2010 204 HOH HOH . E 5 HOH A 111 2011 161 HOH HOH . E 5 HOH A 112 2012 239 HOH HOH . E 5 HOH A 113 2013 9 HOH HOH . E 5 HOH A 114 2014 26 HOH HOH . E 5 HOH A 115 2015 88 HOH HOH . E 5 HOH A 116 2016 209 HOH HOH . E 5 HOH A 117 2017 58 HOH HOH . E 5 HOH A 118 2018 184 HOH HOH . E 5 HOH A 119 2019 72 HOH HOH . E 5 HOH A 120 2020 148 HOH HOH . E 5 HOH A 121 2021 270 HOH HOH . E 5 HOH A 122 2022 123 HOH HOH . E 5 HOH A 123 2023 63 HOH HOH . E 5 HOH A 124 2024 62 HOH HOH . E 5 HOH A 125 2025 139 HOH HOH . E 5 HOH A 126 2026 22 HOH HOH . E 5 HOH A 127 2027 94 HOH HOH . E 5 HOH A 128 2028 192 HOH HOH . E 5 HOH A 129 2029 37 HOH HOH . E 5 HOH A 130 2030 167 HOH HOH . E 5 HOH A 131 2031 268 HOH HOH . E 5 HOH A 132 2032 11 HOH HOH . E 5 HOH A 133 2033 261 HOH HOH . E 5 HOH A 134 2034 219 HOH HOH . E 5 HOH A 135 2035 125 HOH HOH . E 5 HOH A 136 2036 234 HOH HOH . E 5 HOH A 137 2037 273 HOH HOH . E 5 HOH A 138 2038 221 HOH HOH . E 5 HOH A 139 2039 126 HOH HOH . E 5 HOH A 140 2040 29 HOH HOH . E 5 HOH A 141 2041 134 HOH HOH . E 5 HOH A 142 2042 8 HOH HOH . E 5 HOH A 143 2043 267 HOH HOH . E 5 HOH A 144 2044 74 HOH HOH . E 5 HOH A 145 2045 152 HOH HOH . E 5 HOH A 146 2046 252 HOH HOH . E 5 HOH A 147 2047 17 HOH HOH . E 5 HOH A 148 2048 198 HOH HOH . E 5 HOH A 149 2049 10 HOH HOH . E 5 HOH A 150 2050 170 HOH HOH . E 5 HOH A 151 2051 24 HOH HOH . E 5 HOH A 152 2052 216 HOH HOH . E 5 HOH A 153 2053 3 HOH HOH . E 5 HOH A 154 2054 21 HOH HOH . E 5 HOH A 155 2055 107 HOH HOH . E 5 HOH A 156 2056 266 HOH HOH . E 5 HOH A 157 2057 237 HOH HOH . E 5 HOH A 158 2058 224 HOH HOH . E 5 HOH A 159 2059 111 HOH HOH . E 5 HOH A 160 2060 35 HOH HOH . E 5 HOH A 161 2061 212 HOH HOH . E 5 HOH A 162 2062 135 HOH HOH . E 5 HOH A 163 2063 92 HOH HOH . E 5 HOH A 164 2064 75 HOH HOH . E 5 HOH A 165 2065 271 HOH HOH . E 5 HOH A 166 2066 54 HOH HOH . E 5 HOH A 167 2067 25 HOH HOH . E 5 HOH A 168 2068 206 HOH HOH . E 5 HOH A 169 2069 263 HOH HOH . E 5 HOH A 170 2070 214 HOH HOH . E 5 HOH A 171 2071 269 HOH HOH . E 5 HOH A 172 2072 65 HOH HOH . E 5 HOH A 173 2073 78 HOH HOH . E 5 HOH A 174 2074 53 HOH HOH . E 5 HOH A 175 2075 199 HOH HOH . E 5 HOH A 176 2076 251 HOH HOH . E 5 HOH A 177 2077 165 HOH HOH . E 5 HOH A 178 2078 42 HOH HOH . E 5 HOH A 179 2079 142 HOH HOH . E 5 HOH A 180 2080 6 HOH HOH . E 5 HOH A 181 2081 215 HOH HOH . E 5 HOH A 182 2082 236 HOH HOH . E 5 HOH A 183 2083 177 HOH HOH . E 5 HOH A 184 2084 117 HOH HOH . E 5 HOH A 185 2085 69 HOH HOH . E 5 HOH A 186 2086 282 HOH HOH . E 5 HOH A 187 2087 262 HOH HOH . E 5 HOH A 188 2088 132 HOH HOH . E 5 HOH A 189 2089 13 HOH HOH . E 5 HOH A 190 2090 154 HOH HOH . E 5 HOH A 191 2091 31 HOH HOH . E 5 HOH A 192 2092 73 HOH HOH . E 5 HOH A 193 2093 162 HOH HOH . E 5 HOH A 194 2094 110 HOH HOH . E 5 HOH A 195 2095 30 HOH HOH . E 5 HOH A 196 2096 157 HOH HOH . E 5 HOH A 197 2097 143 HOH HOH . E 5 HOH A 198 2098 203 HOH HOH . E 5 HOH A 199 2099 133 HOH HOH . E 5 HOH A 200 2100 19 HOH HOH . E 5 HOH A 201 2101 218 HOH HOH . E 5 HOH A 202 2102 79 HOH HOH . E 5 HOH A 203 2103 213 HOH HOH . E 5 HOH A 204 2104 277 HOH HOH . E 5 HOH A 205 2105 50 HOH HOH . E 5 HOH A 206 2106 290 HOH HOH . E 5 HOH A 207 2107 220 HOH HOH . E 5 HOH A 208 2108 185 HOH HOH . E 5 HOH A 209 2109 179 HOH HOH . E 5 HOH A 210 2110 235 HOH HOH . E 5 HOH A 211 2111 211 HOH HOH . E 5 HOH A 212 2112 259 HOH HOH . E 5 HOH A 213 2113 241 HOH HOH . E 5 HOH A 214 2114 283 HOH HOH . E 5 HOH A 215 2115 34 HOH HOH . E 5 HOH A 216 2116 183 HOH HOH . E 5 HOH A 217 2117 230 HOH HOH . E 5 HOH A 218 2118 249 HOH HOH . E 5 HOH A 219 2119 202 HOH HOH . E 5 HOH A 220 2120 71 HOH HOH . E 5 HOH A 221 2121 100 HOH HOH . E 5 HOH A 222 2122 99 HOH HOH . E 5 HOH A 223 2123 115 HOH HOH . E 5 HOH A 224 2124 297 HOH HOH . E 5 HOH A 225 2125 47 HOH HOH . E 5 HOH A 226 2126 208 HOH HOH . E 5 HOH A 227 2127 188 HOH HOH . E 5 HOH A 228 2128 80 HOH HOH . E 5 HOH A 229 2129 149 HOH HOH . E 5 HOH A 230 2130 7 HOH HOH . E 5 HOH A 231 2131 168 HOH HOH . E 5 HOH A 232 2132 41 HOH HOH . E 5 HOH A 233 2133 260 HOH HOH . E 5 HOH A 234 2134 205 HOH HOH . E 5 HOH A 235 2135 90 HOH HOH . E 5 HOH A 236 2136 280 HOH HOH . E 5 HOH A 237 2137 82 HOH HOH . E 5 HOH A 238 2138 228 HOH HOH . E 5 HOH A 239 2139 291 HOH HOH . E 5 HOH A 240 2140 158 HOH HOH . E 5 HOH A 241 2141 156 HOH HOH . E 5 HOH A 242 2142 293 HOH HOH . E 5 HOH A 243 2143 172 HOH HOH . E 5 HOH A 244 2144 95 HOH HOH . E 5 HOH A 245 2145 288 HOH HOH . E 5 HOH A 246 2146 171 HOH HOH . E 5 HOH A 247 2147 178 HOH HOH . E 5 HOH A 248 2148 81 HOH HOH . E 5 HOH A 249 2149 278 HOH HOH . E 5 HOH A 250 2150 240 HOH HOH . E 5 HOH A 251 2151 103 HOH HOH . E 5 HOH A 252 2152 153 HOH HOH . E 5 HOH A 253 2153 97 HOH HOH . E 5 HOH A 254 2154 120 HOH HOH . E 5 HOH A 255 2155 294 HOH HOH . E 5 HOH A 256 2156 295 HOH HOH . E 5 HOH A 257 2157 217 HOH HOH . E 5 HOH A 258 2158 128 HOH HOH . E 5 HOH A 259 2159 284 HOH HOH . E 5 HOH A 260 2160 296 HOH HOH . E 5 HOH A 261 2161 182 HOH HOH . E 5 HOH A 262 2162 144 HOH HOH . E 5 HOH A 263 2163 181 HOH HOH . E 5 HOH A 264 2164 147 HOH HOH . E 5 HOH A 265 2165 253 HOH HOH . E 5 HOH A 266 2166 265 HOH HOH . E 5 HOH A 267 2167 256 HOH HOH . E 5 HOH A 268 2168 286 HOH HOH . E 5 HOH A 269 2169 287 HOH HOH . E 5 HOH A 270 2170 124 HOH HOH . E 5 HOH A 271 2171 180 HOH HOH . E 5 HOH A 272 2172 98 HOH HOH . E 5 HOH A 273 2173 113 HOH HOH . E 5 HOH A 274 2174 83 HOH HOH . E 5 HOH A 275 2175 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 38.727 62.42 -8.825 1 38.29 ? C1 GOL 1803 A 1 HETATM 2 O O1 GOL . . . D 4 38.696 61.624 -10.01 1 34.92 ? O1 GOL 1803 A 1 HETATM 3 C C2 GOL . . . D 4 37.34 62.913 -8.482 1 38.97 ? C2 GOL 1803 A 1 HETATM 4 O O2 GOL . . . D 4 36.528 61.792 -8.111 1 35.17 ? O2 GOL 1803 A 1 HETATM 5 C C3 GOL . . . D 4 37.37 63.92 -7.355 1 40.64 ? C3 GOL 1803 A 1 HETATM 6 O O3 GOL . . . D 4 36.135 64.629 -7.284 1 40.2 ? O3 GOL 1803 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #