data_5LGH # _model_server_result.job_id o_o-_GEZi7ZV08ndqOBx7Q _model_server_result.datetime_utc '2024-11-05 00:38:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lgh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 5LGH # _exptl.entry_id 5LGH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LGH _cell.length_a 72.196 _cell.length_b 67.491 _cell.length_c 88.941 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LGH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf2 A SG CYS 145 H CYS 140 1_555 A SG CYS 200 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? disulf ? disulf4 B SG CYS 135 L CYS 134 1_555 B SG CYS 195 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 B ND2 ASN 26 L ASN 26 1_555 H C1 NAG . L NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5LGH _atom_sites.fract_transf_matrix[1][1] 0.013851 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PG4 H 1 301 301 PG4 PG4 . D 4 PEG H 1 302 302 PEG PEG . E 4 PEG H 1 303 303 PEG PEG . F 4 PEG H 1 304 304 PEG PEG . G 5 1PE L 1 301 301 1PE 1PE . H 6 NAG L 1 302 302 NAG NAG . I 7 HOH H 1 401 401 HOH HOH . I 7 HOH H 2 402 402 HOH HOH . I 7 HOH H 3 403 403 HOH HOH . I 7 HOH H 4 404 404 HOH HOH . I 7 HOH H 5 405 405 HOH HOH . I 7 HOH H 6 406 406 HOH HOH . I 7 HOH H 7 407 407 HOH HOH . I 7 HOH H 8 408 408 HOH HOH . I 7 HOH H 9 409 409 HOH HOH . I 7 HOH H 10 410 410 HOH HOH . I 7 HOH H 11 411 411 HOH HOH . I 7 HOH H 12 412 412 HOH HOH . I 7 HOH H 13 413 413 HOH HOH . I 7 HOH H 14 414 414 HOH HOH . I 7 HOH H 15 415 415 HOH HOH . I 7 HOH H 16 416 416 HOH HOH . I 7 HOH H 17 417 417 HOH HOH . I 7 HOH H 18 418 418 HOH HOH . I 7 HOH H 19 419 419 HOH HOH . I 7 HOH H 20 420 420 HOH HOH . I 7 HOH H 21 421 421 HOH HOH . I 7 HOH H 22 422 422 HOH HOH . I 7 HOH H 23 423 423 HOH HOH . I 7 HOH H 24 424 424 HOH HOH . I 7 HOH H 25 425 425 HOH HOH . I 7 HOH H 26 426 426 HOH HOH . I 7 HOH H 27 427 427 HOH HOH . I 7 HOH H 28 428 428 HOH HOH . I 7 HOH H 29 429 429 HOH HOH . I 7 HOH H 30 430 430 HOH HOH . I 7 HOH H 31 431 431 HOH HOH . I 7 HOH H 32 432 432 HOH HOH . I 7 HOH H 33 433 433 HOH HOH . I 7 HOH H 34 434 434 HOH HOH . I 7 HOH H 35 435 435 HOH HOH . I 7 HOH H 36 436 436 HOH HOH . I 7 HOH H 37 437 437 HOH HOH . I 7 HOH H 38 438 438 HOH HOH . I 7 HOH H 39 439 439 HOH HOH . I 7 HOH H 40 440 440 HOH HOH . I 7 HOH H 41 441 441 HOH HOH . I 7 HOH H 42 442 442 HOH HOH . I 7 HOH H 43 443 443 HOH HOH . I 7 HOH H 44 444 444 HOH HOH . I 7 HOH H 45 445 445 HOH HOH . I 7 HOH H 46 446 446 HOH HOH . I 7 HOH H 47 447 447 HOH HOH . I 7 HOH H 48 448 448 HOH HOH . I 7 HOH H 49 449 449 HOH HOH . I 7 HOH H 50 450 450 HOH HOH . I 7 HOH H 51 451 451 HOH HOH . I 7 HOH H 52 452 452 HOH HOH . I 7 HOH H 53 453 453 HOH HOH . I 7 HOH H 54 454 454 HOH HOH . I 7 HOH H 55 455 455 HOH HOH . I 7 HOH H 56 456 456 HOH HOH . I 7 HOH H 57 457 457 HOH HOH . I 7 HOH H 58 458 458 HOH HOH . I 7 HOH H 59 459 459 HOH HOH . I 7 HOH H 60 460 460 HOH HOH . I 7 HOH H 61 461 461 HOH HOH . I 7 HOH H 62 462 462 HOH HOH . I 7 HOH H 63 463 463 HOH HOH . I 7 HOH H 64 464 464 HOH HOH . I 7 HOH H 65 465 465 HOH HOH . I 7 HOH H 66 466 466 HOH HOH . I 7 HOH H 67 467 467 HOH HOH . I 7 HOH H 68 468 468 HOH HOH . I 7 HOH H 69 469 469 HOH HOH . I 7 HOH H 70 470 470 HOH HOH . I 7 HOH H 71 471 471 HOH HOH . I 7 HOH H 72 472 472 HOH HOH . I 7 HOH H 73 473 473 HOH HOH . I 7 HOH H 74 474 474 HOH HOH . I 7 HOH H 75 475 475 HOH HOH . I 7 HOH H 76 476 476 HOH HOH . I 7 HOH H 77 477 477 HOH HOH . I 7 HOH H 78 478 478 HOH HOH . I 7 HOH H 79 479 479 HOH HOH . I 7 HOH H 80 480 480 HOH HOH . I 7 HOH H 81 481 481 HOH HOH . I 7 HOH H 82 482 482 HOH HOH . I 7 HOH H 83 483 483 HOH HOH . I 7 HOH H 84 484 484 HOH HOH . I 7 HOH H 85 485 485 HOH HOH . I 7 HOH H 86 486 486 HOH HOH . I 7 HOH H 87 487 487 HOH HOH . I 7 HOH H 88 488 488 HOH HOH . I 7 HOH H 89 489 489 HOH HOH . I 7 HOH H 90 490 490 HOH HOH . I 7 HOH H 91 491 491 HOH HOH . I 7 HOH H 92 492 492 HOH HOH . I 7 HOH H 93 493 493 HOH HOH . I 7 HOH H 94 494 494 HOH HOH . I 7 HOH H 95 495 495 HOH HOH . I 7 HOH H 96 496 496 HOH HOH . I 7 HOH H 97 497 497 HOH HOH . I 7 HOH H 98 498 498 HOH HOH . I 7 HOH H 99 499 499 HOH HOH . I 7 HOH H 100 500 500 HOH HOH . I 7 HOH H 101 501 501 HOH HOH . I 7 HOH H 102 502 502 HOH HOH . I 7 HOH H 103 503 503 HOH HOH . I 7 HOH H 104 504 504 HOH HOH . I 7 HOH H 105 505 505 HOH HOH . I 7 HOH H 106 506 506 HOH HOH . I 7 HOH H 107 507 507 HOH HOH . I 7 HOH H 108 508 508 HOH HOH . I 7 HOH H 109 509 509 HOH HOH . I 7 HOH H 110 510 510 HOH HOH . I 7 HOH H 111 511 511 HOH HOH . I 7 HOH H 112 512 512 HOH HOH . I 7 HOH H 113 513 513 HOH HOH . I 7 HOH H 114 514 514 HOH HOH . I 7 HOH H 115 515 515 HOH HOH . I 7 HOH H 116 516 516 HOH HOH . I 7 HOH H 117 517 517 HOH HOH . I 7 HOH H 118 518 518 HOH HOH . I 7 HOH H 119 519 519 HOH HOH . I 7 HOH H 120 520 520 HOH HOH . I 7 HOH H 121 521 521 HOH HOH . I 7 HOH H 122 522 522 HOH HOH . I 7 HOH H 123 523 523 HOH HOH . I 7 HOH H 124 524 524 HOH HOH . I 7 HOH H 125 525 525 HOH HOH . J 7 HOH L 1 401 401 HOH HOH . J 7 HOH L 2 402 402 HOH HOH . J 7 HOH L 3 403 403 HOH HOH . J 7 HOH L 4 404 404 HOH HOH . J 7 HOH L 5 405 405 HOH HOH . J 7 HOH L 6 406 406 HOH HOH . J 7 HOH L 7 407 407 HOH HOH . J 7 HOH L 8 408 408 HOH HOH . J 7 HOH L 9 409 409 HOH HOH . J 7 HOH L 10 410 410 HOH HOH . J 7 HOH L 11 411 411 HOH HOH . J 7 HOH L 12 412 412 HOH HOH . J 7 HOH L 13 413 413 HOH HOH . J 7 HOH L 14 414 414 HOH HOH . J 7 HOH L 15 415 415 HOH HOH . J 7 HOH L 16 416 416 HOH HOH . J 7 HOH L 17 417 417 HOH HOH . J 7 HOH L 18 418 418 HOH HOH . J 7 HOH L 19 419 419 HOH HOH . J 7 HOH L 20 420 420 HOH HOH . J 7 HOH L 21 421 421 HOH HOH . J 7 HOH L 22 422 422 HOH HOH . J 7 HOH L 23 423 423 HOH HOH . J 7 HOH L 24 424 424 HOH HOH . J 7 HOH L 25 425 425 HOH HOH . J 7 HOH L 26 426 426 HOH HOH . J 7 HOH L 27 427 427 HOH HOH . J 7 HOH L 28 428 428 HOH HOH . J 7 HOH L 29 429 429 HOH HOH . J 7 HOH L 30 430 430 HOH HOH . J 7 HOH L 31 431 431 HOH HOH . J 7 HOH L 32 432 432 HOH HOH . J 7 HOH L 33 433 433 HOH HOH . J 7 HOH L 34 434 434 HOH HOH . J 7 HOH L 35 435 435 HOH HOH . J 7 HOH L 36 436 436 HOH HOH . J 7 HOH L 37 437 437 HOH HOH . J 7 HOH L 38 438 438 HOH HOH . J 7 HOH L 39 439 439 HOH HOH . J 7 HOH L 40 440 440 HOH HOH . J 7 HOH L 41 441 441 HOH HOH . J 7 HOH L 42 442 442 HOH HOH . J 7 HOH L 43 443 443 HOH HOH . J 7 HOH L 44 444 444 HOH HOH . J 7 HOH L 45 445 445 HOH HOH . J 7 HOH L 46 446 446 HOH HOH . J 7 HOH L 47 447 447 HOH HOH . J 7 HOH L 48 448 448 HOH HOH . J 7 HOH L 49 449 449 HOH HOH . J 7 HOH L 50 450 450 HOH HOH . J 7 HOH L 51 451 451 HOH HOH . J 7 HOH L 52 452 452 HOH HOH . J 7 HOH L 53 453 453 HOH HOH . J 7 HOH L 54 454 454 HOH HOH . J 7 HOH L 55 455 455 HOH HOH . J 7 HOH L 56 456 456 HOH HOH . J 7 HOH L 57 457 457 HOH HOH . J 7 HOH L 58 458 458 HOH HOH . J 7 HOH L 59 459 459 HOH HOH . J 7 HOH L 60 460 460 HOH HOH . J 7 HOH L 61 461 461 HOH HOH . J 7 HOH L 62 462 462 HOH HOH . J 7 HOH L 63 463 463 HOH HOH . J 7 HOH L 64 464 464 HOH HOH . J 7 HOH L 65 465 465 HOH HOH . J 7 HOH L 66 466 466 HOH HOH . J 7 HOH L 67 467 467 HOH HOH . J 7 HOH L 68 468 468 HOH HOH . J 7 HOH L 69 469 469 HOH HOH . J 7 HOH L 70 470 470 HOH HOH . J 7 HOH L 71 471 471 HOH HOH . J 7 HOH L 72 472 472 HOH HOH . J 7 HOH L 73 473 473 HOH HOH . J 7 HOH L 74 474 474 HOH HOH . J 7 HOH L 75 475 475 HOH HOH . J 7 HOH L 76 476 476 HOH HOH . J 7 HOH L 77 477 477 HOH HOH . J 7 HOH L 78 478 478 HOH HOH . J 7 HOH L 79 479 479 HOH HOH . J 7 HOH L 80 480 480 HOH HOH . J 7 HOH L 81 481 481 HOH HOH . J 7 HOH L 82 482 482 HOH HOH . J 7 HOH L 83 483 483 HOH HOH . J 7 HOH L 84 484 484 HOH HOH . J 7 HOH L 85 485 485 HOH HOH . J 7 HOH L 86 486 486 HOH HOH . J 7 HOH L 87 487 487 HOH HOH . J 7 HOH L 88 488 488 HOH HOH . J 7 HOH L 89 489 489 HOH HOH . J 7 HOH L 90 490 490 HOH HOH . J 7 HOH L 91 491 491 HOH HOH . J 7 HOH L 92 492 492 HOH HOH . J 7 HOH L 93 493 493 HOH HOH . J 7 HOH L 94 494 494 HOH HOH . J 7 HOH L 95 495 495 HOH HOH . J 7 HOH L 96 496 496 HOH HOH . J 7 HOH L 97 497 497 HOH HOH . J 7 HOH L 98 498 498 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . G 5 -6.236 12.365 18.759 1 60.93 ? OH2 1PE 301 L 1 HETATM 2 C C12 1PE . . . G 5 -5.365 11.865 19.786 1 59.21 ? C12 1PE 301 L 1 HETATM 3 C C22 1PE . . . G 5 -3.924 12.315 19.556 1 58.47 ? C22 1PE 301 L 1 HETATM 4 O OH3 1PE . . . G 5 -3.413 11.866 18.292 1 55.68 ? OH3 1PE 301 L 1 HETATM 5 C C13 1PE . . . G 5 -1.466 12.079 16.793 1 51.34 ? C13 1PE 301 L 1 HETATM 6 C C23 1PE . . . G 5 -1.981 11.904 18.219 1 54.41 ? C23 1PE 301 L 1 HETATM 7 O OH4 1PE . . . G 5 -1.829 13.388 16.362 1 52.14 ? OH4 1PE 301 L 1 HETATM 8 C C14 1PE . . . G 5 -1.756 15.165 14.796 1 42.51 ? C14 1PE 301 L 1 HETATM 9 C C24 1PE . . . G 5 -0.99 13.989 15.386 1 42.48 ? C24 1PE 301 L 1 HETATM 10 O OH5 1PE . . . G 5 -2.897 14.648 14.113 1 45.26 ? OH5 1PE 301 L 1 HETATM 11 C C15 1PE . . . G 5 -5.176 14.85 13.42 1 50.2 ? C15 1PE 301 L 1 HETATM 12 C C25 1PE . . . G 5 -3.929 15.603 13.864 1 42.91 ? C25 1PE 301 L 1 HETATM 13 O OH6 1PE . . . G 5 -6.112 14.723 14.494 1 57.7 ? OH6 1PE 301 L 1 HETATM 14 C C16 1PE . . . G 5 -6.854 16.322 16.16 1 75.28 ? C16 1PE 301 L 1 HETATM 15 C C26 1PE . . . G 5 -6.959 15.861 14.707 1 69.86 ? C26 1PE 301 L 1 HETATM 16 O OH7 1PE . . . G 5 -7.537 17.569 16.331 1 73 ? OH7 1PE 301 L 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #