data_5LGN
#
_model_server_result.job_id            lesPMKQNrnq-2iXyfqeHhw 
_model_server_result.datetime_utc      '2024-11-04 20:09:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lgn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    5LGN 
#
_exptl.entry_id    5LGN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     'The FAD cofactor is integral part of the protein chain' 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5LGN 
_cell.length_a            120.51 
_cell.length_b            180.44 
_cell.length_c            235.42 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LGN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 122 n n 
PA O2A FAD sing 123 n n 
PA O5B FAD sing 124 n n 
PA O3P FAD sing 125 n n 
O2A HOA2 FAD sing 126 n n 
O5B C5B FAD sing 127 n n 
C5B C4B FAD sing 128 n n 
C5B H51A FAD sing 129 n n 
C5B H52A FAD sing 130 n n 
C4B O4B FAD sing 131 n n 
C4B C3B FAD sing 132 n n 
C4B H4B FAD sing 133 n n 
O4B C1B FAD sing 134 n n 
C3B O3B FAD sing 135 n n 
C3B C2B FAD sing 136 n n 
C3B H3B FAD sing 137 n n 
O3B HO3A FAD sing 138 n n 
C2B O2B FAD sing 139 n n 
C2B C1B FAD sing 140 n n 
C2B H2B FAD sing 141 n n 
O2B HO2A FAD sing 142 n n 
C1B N9A FAD sing 143 n n 
C1B H1B FAD sing 144 n n 
N9A C8A FAD sing 145 n y 
N9A C4A FAD sing 146 n y 
C8A N7A FAD doub 147 n y 
C8A H8A FAD sing 148 n n 
N7A C5A FAD sing 149 n y 
C5A C6A FAD sing 150 n y 
C5A C4A FAD doub 151 n y 
C6A N6A FAD sing 152 n n 
C6A N1A FAD doub 153 n y 
N6A H61A FAD sing 154 n n 
N6A H62A FAD sing 155 n n 
N1A C2A FAD sing 156 n y 
C2A N3A FAD doub 157 n y 
C2A H2A FAD sing 158 n n 
N3A C4A FAD sing 159 n y 
N1 C2 FAD sing 160 n n 
N1 C10 FAD doub 161 n n 
C2 O2 FAD doub 162 n n 
C2 N3 FAD sing 163 n n 
N3 C4 FAD sing 164 n n 
N3 HN3 FAD sing 165 n n 
C4 O4 FAD doub 166 n n 
C4 C4X FAD sing 167 n n 
C4X N5 FAD doub 168 n n 
C4X C10 FAD sing 169 n n 
N5 C5X FAD sing 170 n n 
C5X C6 FAD doub 171 n y 
C5X C9A FAD sing 172 n y 
C6 C7 FAD sing 173 n y 
C6 H6 FAD sing 174 n n 
C7 C7M FAD sing 175 n n 
C7 C8 FAD doub 176 n y 
C7M HM71 FAD sing 177 n n 
C7M HM72 FAD sing 178 n n 
C7M HM73 FAD sing 179 n n 
C8 C8M FAD sing 180 n n 
C8 C9 FAD sing 181 n y 
C8M HM81 FAD sing 182 n n 
C8M HM82 FAD sing 183 n n 
C8M HM83 FAD sing 184 n n 
C9 C9A FAD doub 185 n y 
C9 H9 FAD sing 186 n n 
C9A N10 FAD sing 187 n n 
N10 C10 FAD sing 188 n n 
N10 C1' FAD sing 189 n n 
C1' C2' FAD sing 190 n n 
C1' "H1'1" FAD sing 191 n n 
C1' "H1'2" FAD sing 192 n n 
C2' O2' FAD sing 193 n n 
C2' C3' FAD sing 194 n n 
C2' H2' FAD sing 195 n n 
O2' HO2' FAD sing 196 n n 
C3' O3' FAD sing 197 n n 
C3' C4' FAD sing 198 n n 
C3' H3' FAD sing 199 n n 
O3' HO3' FAD sing 200 n n 
C4' O4' FAD sing 201 n n 
C4' C5' FAD sing 202 n n 
C4' H4' FAD sing 203 n n 
O4' HO4' FAD sing 204 n n 
C5' O5' FAD sing 205 n n 
C5' "H5'1" FAD sing 206 n n 
C5' "H5'2" FAD sing 207 n n 
O5' P FAD sing 208 n n 
P O1P FAD doub 209 n n 
P O2P FAD sing 210 n n 
P O3P FAD sing 211 n n 
O2P HOP2 FAD sing 212 n n 
#
_atom_sites.entry_id                     5LGN 
_atom_sites.fract_transf_matrix[1][1]    0.008298 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005542 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004248 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 FAD A 1 901 904 FAD FAD . 
D 4 6W0 A 1 902 1 6W0 D51 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 3 -6.512 68.269 88.542 1 73.61 ? PA FAD 901 A 1 
HETATM 2 O O1A FAD . . . C 3 -5.661 68.947 87.453 1 69.81 ? O1A FAD 901 A 1 
HETATM 3 O O2A FAD . . . C 3 -7.779 67.445 88.245 1 67.54 ? O2A FAD 901 A 1 
HETATM 4 O O5B FAD . . . C 3 -7.006 69.488 89.469 1 72.66 ? O5B FAD 901 A 1 
HETATM 5 C C5B FAD . . . C 3 -6.123 70.523 89.876 1 76.84 ? C5B FAD 901 A 1 
HETATM 6 C C4B FAD . . . C 3 -6.698 71.891 89.539 1 75.66 ? C4B FAD 901 A 1 
HETATM 7 O O4B FAD . . . C 3 -5.726 72.92 89.801 1 70.89 ? O4B FAD 901 A 1 
HETATM 8 C C3B FAD . . . C 3 -7.116 72.002 88.075 1 76.74 ? C3B FAD 901 A 1 
HETATM 9 O O3B FAD . . . C 3 -8.53 72.269 88.017 1 84.6 ? O3B FAD 901 A 1 
HETATM 10 C C2B FAD . . . C 3 -6.243 73.13 87.545 1 74.2 ? C2B FAD 901 A 1 
HETATM 11 O O2B FAD . . . C 3 -6.849 73.989 86.577 1 69.61 ? O2B FAD 901 A 1 
HETATM 12 C C1B FAD . . . C 3 -5.946 73.906 88.814 1 73.24 ? C1B FAD 901 A 1 
HETATM 13 N N9A FAD . . . C 3 -4.799 74.81 88.678 1 73.96 ? N9A FAD 901 A 1 
HETATM 14 C C8A FAD . . . C 3 -3.673 74.622 87.969 1 76.84 ? C8A FAD 901 A 1 
HETATM 15 N N7A FAD . . . C 3 -2.849 75.695 88.072 1 77.4 ? N7A FAD 901 A 1 
HETATM 16 C C5A FAD . . . C 3 -3.472 76.571 88.859 1 75.28 ? C5A FAD 901 A 1 
HETATM 17 C C6A FAD . . . C 3 -3.144 77.891 89.383 1 74.46 ? C6A FAD 901 A 1 
HETATM 18 N N6A FAD . . . C 3 -1.968 78.429 89.026 1 79.91 ? N6A FAD 901 A 1 
HETATM 19 N N1A FAD . . . C 3 -4.041 78.503 90.186 1 73.88 ? N1A FAD 901 A 1 
HETATM 20 C C2A FAD . . . C 3 -5.227 77.926 90.503 1 76.15 ? C2A FAD 901 A 1 
HETATM 21 N N3A FAD . . . C 3 -5.586 76.702 90.068 1 74.05 ? N3A FAD 901 A 1 
HETATM 22 C C4A FAD . . . C 3 -4.756 75.995 89.26 1 75.4 ? C4A FAD 901 A 1 
HETATM 23 N N1 FAD . . . C 3 -8.101 58.544 85.721 1 81.84 ? N1 FAD 901 A 1 
HETATM 24 C C2 FAD . . . C 3 -8.92 57.449 85.726 1 86.19 ? C2 FAD 901 A 1 
HETATM 25 O O2 FAD . . . C 3 -9.213 56.867 86.812 1 87.57 ? O2 FAD 901 A 1 
HETATM 26 N N3 FAD . . . C 3 -9.445 56.955 84.583 1 88.05 ? N3 FAD 901 A 1 
HETATM 27 C C4 FAD . . . C 3 -9.207 57.496 83.382 1 87.99 ? C4 FAD 901 A 1 
HETATM 28 O O4 FAD . . . C 3 -9.681 57.086 82.294 1 98.8 ? O4 FAD 901 A 1 
HETATM 29 C C4X FAD . . . C 3 -8.344 58.654 83.311 1 87.18 ? C4X FAD 901 A 1 
HETATM 30 N N5 FAD . . . C 3 -8.14 59.173 82.101 1 91.09 ? N5 FAD 901 A 1 
HETATM 31 C C5X FAD . . . C 3 -7.385 60.253 81.983 1 90.27 ? C5X FAD 901 A 1 
HETATM 32 C C6 FAD . . . C 3 -7.239 60.731 80.698 1 93.77 ? C6 FAD 901 A 1 
HETATM 33 C C7 FAD . . . C 3 -6.471 61.85 80.477 1 96.38 ? C7 FAD 901 A 1 
HETATM 34 C C7M FAD . . . C 3 -6.29 62.389 79.08 1 94.3 ? C7M FAD 901 A 1 
HETATM 35 C C8 FAD . . . C 3 -5.826 62.504 81.642 1 100.01 ? C8 FAD 901 A 1 
HETATM 36 C C8M FAD . . . C 3 -4.991 63.721 81.372 1 102.21 ? C8M FAD 901 A 1 
HETATM 37 C C9 FAD . . . C 3 -5.985 62.02 82.946 1 93.63 ? C9 FAD 901 A 1 
HETATM 38 C C9A FAD . . . C 3 -6.754 60.89 83.183 1 88.78 ? C9A FAD 901 A 1 
HETATM 39 N N10 FAD . . . C 3 -6.955 60.335 84.488 1 86.43 ? N10 FAD 901 A 1 
HETATM 40 C C10 FAD . . . C 3 -7.776 59.184 84.567 1 85.14 ? C10 FAD 901 A 1 
HETATM 41 C C1' FAD . . . C 3 -6.38 60.891 85.732 1 82.63 ? C1' FAD 901 A 1 
HETATM 42 C C2' FAD . . . C 3 -7.315 61.901 86.411 1 82.43 ? C2' FAD 901 A 1 
HETATM 43 O O2' FAD . . . C 3 -7.891 62.777 85.449 1 81.97 ? O2' FAD 901 A 1 
HETATM 44 C C3' FAD . . . C 3 -6.559 62.816 87.346 1 84.34 ? C3' FAD 901 A 1 
HETATM 45 O O3' FAD . . . C 3 -5.625 61.988 88.05 1 75.82 ? O3' FAD 901 A 1 
HETATM 46 C C4' FAD . . . C 3 -7.461 63.628 88.305 1 91.56 ? C4' FAD 901 A 1 
HETATM 47 O O4' FAD . . . C 3 -8.388 64.557 87.694 1 95.37 ? O4' FAD 901 A 1 
HETATM 48 C C5' FAD . . . C 3 -6.536 64.435 89.21 1 90.56 ? C5' FAD 901 A 1 
HETATM 49 O O5' FAD . . . C 3 -7.21 65.423 89.979 1 76.32 ? O5' FAD 901 A 1 
HETATM 50 P P FAD . . . C 3 -6.217 66.44 90.706 1 74.96 ? P FAD 901 A 1 
HETATM 51 O O1P FAD . . . C 3 -5.055 65.707 91.328 1 67.63 ? O1P FAD 901 A 1 
HETATM 52 O O2P FAD . . . C 3 -7.123 67.279 91.583 1 91.36 ? O2P FAD 901 A 1 
HETATM 53 O O3P FAD . . . C 3 -5.584 67.375 89.531 1 71.26 ? O3P FAD 901 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#