data_5LGO # _model_server_result.job_id oylG-Uc-3bB6G9j-Svr1ww _model_server_result.datetime_utc '2024-10-28 14:30:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lgo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5LGO # _exptl.entry_id 5LGO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LGO _cell.length_a 55.232 _cell.length_b 55.232 _cell.length_c 106.981 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LGO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc4 A OE1 GLU 59 A GLU 77 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc5 A OE2 GLU 62 A GLU 80 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LGO _atom_sites.fract_transf_matrix[1][1] 0.018105 _atom_sites.fract_transf_matrix[1][2] 0.010453 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 301 311 DMS DMS . C 3 CA A 1 302 501 CA CA . D 4 6VZ A 1 303 1 6VZ LI1 . E 5 HOH A 1 401 64 HOH HOH . E 5 HOH A 2 402 8 HOH HOH . E 5 HOH A 3 403 119 HOH HOH . E 5 HOH A 4 404 10 HOH HOH . E 5 HOH A 5 405 36 HOH HOH . E 5 HOH A 6 406 133 HOH HOH . E 5 HOH A 7 407 233 HOH HOH . E 5 HOH A 8 408 205 HOH HOH . E 5 HOH A 9 409 44 HOH HOH . E 5 HOH A 10 410 230 HOH HOH . E 5 HOH A 11 411 85 HOH HOH . E 5 HOH A 12 412 189 HOH HOH . E 5 HOH A 13 413 206 HOH HOH . E 5 HOH A 14 414 183 HOH HOH . E 5 HOH A 15 415 181 HOH HOH . E 5 HOH A 16 416 38 HOH HOH . E 5 HOH A 17 417 135 HOH HOH . E 5 HOH A 18 418 120 HOH HOH . E 5 HOH A 19 419 277 HOH HOH . E 5 HOH A 20 420 113 HOH HOH . E 5 HOH A 21 421 179 HOH HOH . E 5 HOH A 22 422 150 HOH HOH . E 5 HOH A 23 423 158 HOH HOH . E 5 HOH A 24 424 62 HOH HOH . E 5 HOH A 25 425 41 HOH HOH . E 5 HOH A 26 426 94 HOH HOH . E 5 HOH A 27 427 198 HOH HOH . E 5 HOH A 28 428 134 HOH HOH . E 5 HOH A 29 429 78 HOH HOH . E 5 HOH A 30 430 106 HOH HOH . E 5 HOH A 31 431 34 HOH HOH . E 5 HOH A 32 432 232 HOH HOH . E 5 HOH A 33 433 132 HOH HOH . E 5 HOH A 34 434 23 HOH HOH . E 5 HOH A 35 435 13 HOH HOH . E 5 HOH A 36 436 174 HOH HOH . E 5 HOH A 37 437 176 HOH HOH . E 5 HOH A 38 438 6 HOH HOH . E 5 HOH A 39 439 61 HOH HOH . E 5 HOH A 40 440 212 HOH HOH . E 5 HOH A 41 441 102 HOH HOH . E 5 HOH A 42 442 223 HOH HOH . E 5 HOH A 43 443 195 HOH HOH . E 5 HOH A 44 444 221 HOH HOH . E 5 HOH A 45 445 30 HOH HOH . E 5 HOH A 46 446 5 HOH HOH . E 5 HOH A 47 447 191 HOH HOH . E 5 HOH A 48 448 151 HOH HOH . E 5 HOH A 49 449 225 HOH HOH . E 5 HOH A 50 450 237 HOH HOH . E 5 HOH A 51 451 162 HOH HOH . E 5 HOH A 52 452 166 HOH HOH . E 5 HOH A 53 453 188 HOH HOH . E 5 HOH A 54 454 178 HOH HOH . E 5 HOH A 55 455 156 HOH HOH . E 5 HOH A 56 456 19 HOH HOH . E 5 HOH A 57 457 157 HOH HOH . E 5 HOH A 58 458 168 HOH HOH . E 5 HOH A 59 459 14 HOH HOH . E 5 HOH A 60 460 129 HOH HOH . E 5 HOH A 61 461 197 HOH HOH . E 5 HOH A 62 462 118 HOH HOH . E 5 HOH A 63 463 167 HOH HOH . E 5 HOH A 64 464 222 HOH HOH . E 5 HOH A 65 465 3 HOH HOH . E 5 HOH A 66 466 83 HOH HOH . E 5 HOH A 67 467 228 HOH HOH . E 5 HOH A 68 468 35 HOH HOH . E 5 HOH A 69 469 182 HOH HOH . E 5 HOH A 70 470 81 HOH HOH . E 5 HOH A 71 471 204 HOH HOH . E 5 HOH A 72 472 69 HOH HOH . E 5 HOH A 73 473 192 HOH HOH . E 5 HOH A 74 474 2 HOH HOH . E 5 HOH A 75 475 138 HOH HOH . E 5 HOH A 76 476 163 HOH HOH . E 5 HOH A 77 477 84 HOH HOH . E 5 HOH A 78 478 207 HOH HOH . E 5 HOH A 79 479 146 HOH HOH . E 5 HOH A 80 480 112 HOH HOH . E 5 HOH A 81 481 173 HOH HOH . E 5 HOH A 82 482 208 HOH HOH . E 5 HOH A 83 483 187 HOH HOH . E 5 HOH A 84 484 32 HOH HOH . E 5 HOH A 85 485 88 HOH HOH . E 5 HOH A 86 486 11 HOH HOH . E 5 HOH A 87 487 20 HOH HOH . E 5 HOH A 88 488 101 HOH HOH . E 5 HOH A 89 489 51 HOH HOH . E 5 HOH A 90 490 92 HOH HOH . E 5 HOH A 91 491 65 HOH HOH . E 5 HOH A 92 492 139 HOH HOH . E 5 HOH A 93 493 73 HOH HOH . E 5 HOH A 94 494 22 HOH HOH . E 5 HOH A 95 495 56 HOH HOH . E 5 HOH A 96 496 72 HOH HOH . E 5 HOH A 97 497 49 HOH HOH . E 5 HOH A 98 498 71 HOH HOH . E 5 HOH A 99 499 199 HOH HOH . E 5 HOH A 100 500 16 HOH HOH . E 5 HOH A 101 501 27 HOH HOH . E 5 HOH A 102 502 66 HOH HOH . E 5 HOH A 103 503 234 HOH HOH . E 5 HOH A 104 504 108 HOH HOH . E 5 HOH A 105 505 25 HOH HOH . E 5 HOH A 106 506 236 HOH HOH . E 5 HOH A 107 507 53 HOH HOH . E 5 HOH A 108 508 235 HOH HOH . E 5 HOH A 109 509 9 HOH HOH . E 5 HOH A 110 510 75 HOH HOH . E 5 HOH A 111 511 12 HOH HOH . E 5 HOH A 112 512 194 HOH HOH . E 5 HOH A 113 513 104 HOH HOH . E 5 HOH A 114 514 117 HOH HOH . E 5 HOH A 115 515 1 HOH HOH . E 5 HOH A 116 516 231 HOH HOH . E 5 HOH A 117 517 217 HOH HOH . E 5 HOH A 118 518 54 HOH HOH . E 5 HOH A 119 519 127 HOH HOH . E 5 HOH A 120 520 172 HOH HOH . E 5 HOH A 121 521 196 HOH HOH . E 5 HOH A 122 522 220 HOH HOH . E 5 HOH A 123 523 28 HOH HOH . E 5 HOH A 124 524 211 HOH HOH . E 5 HOH A 125 525 123 HOH HOH . E 5 HOH A 126 526 116 HOH HOH . E 5 HOH A 127 527 155 HOH HOH . E 5 HOH A 128 528 109 HOH HOH . E 5 HOH A 129 529 171 HOH HOH . E 5 HOH A 130 530 74 HOH HOH . E 5 HOH A 131 531 15 HOH HOH . E 5 HOH A 132 532 136 HOH HOH . E 5 HOH A 133 533 50 HOH HOH . E 5 HOH A 134 534 26 HOH HOH . E 5 HOH A 135 535 177 HOH HOH . E 5 HOH A 136 536 67 HOH HOH . E 5 HOH A 137 537 201 HOH HOH . E 5 HOH A 138 538 210 HOH HOH . E 5 HOH A 139 539 4 HOH HOH . E 5 HOH A 140 540 76 HOH HOH . E 5 HOH A 141 541 43 HOH HOH . E 5 HOH A 142 542 97 HOH HOH . E 5 HOH A 143 543 29 HOH HOH . E 5 HOH A 144 544 77 HOH HOH . E 5 HOH A 145 545 247 HOH HOH . E 5 HOH A 146 546 70 HOH HOH . E 5 HOH A 147 547 141 HOH HOH . E 5 HOH A 148 548 58 HOH HOH . E 5 HOH A 149 549 111 HOH HOH . E 5 HOH A 150 550 46 HOH HOH . E 5 HOH A 151 551 98 HOH HOH . E 5 HOH A 152 552 115 HOH HOH . E 5 HOH A 153 553 229 HOH HOH . E 5 HOH A 154 554 59 HOH HOH . E 5 HOH A 155 555 140 HOH HOH . E 5 HOH A 156 556 143 HOH HOH . E 5 HOH A 157 557 114 HOH HOH . E 5 HOH A 158 558 68 HOH HOH . E 5 HOH A 159 559 18 HOH HOH . E 5 HOH A 160 560 55 HOH HOH . E 5 HOH A 161 561 142 HOH HOH . E 5 HOH A 162 562 110 HOH HOH . E 5 HOH A 163 563 121 HOH HOH . E 5 HOH A 164 564 37 HOH HOH . E 5 HOH A 165 565 252 HOH HOH . E 5 HOH A 166 566 87 HOH HOH . E 5 HOH A 167 567 52 HOH HOH . E 5 HOH A 168 568 224 HOH HOH . E 5 HOH A 169 569 40 HOH HOH . E 5 HOH A 170 570 185 HOH HOH . E 5 HOH A 171 571 125 HOH HOH . E 5 HOH A 172 572 63 HOH HOH . E 5 HOH A 173 573 144 HOH HOH . E 5 HOH A 174 574 216 HOH HOH . E 5 HOH A 175 575 227 HOH HOH . E 5 HOH A 176 576 24 HOH HOH . E 5 HOH A 177 577 278 HOH HOH . E 5 HOH A 178 578 96 HOH HOH . E 5 HOH A 179 579 124 HOH HOH . E 5 HOH A 180 580 47 HOH HOH . E 5 HOH A 181 581 31 HOH HOH . E 5 HOH A 182 582 153 HOH HOH . E 5 HOH A 183 583 164 HOH HOH . E 5 HOH A 184 584 82 HOH HOH . E 5 HOH A 185 585 215 HOH HOH . E 5 HOH A 186 586 240 HOH HOH . E 5 HOH A 187 587 243 HOH HOH . E 5 HOH A 188 588 239 HOH HOH . E 5 HOH A 189 589 244 HOH HOH . E 5 HOH A 190 590 48 HOH HOH . E 5 HOH A 191 591 184 HOH HOH . E 5 HOH A 192 592 105 HOH HOH . E 5 HOH A 193 593 17 HOH HOH . E 5 HOH A 194 594 145 HOH HOH . E 5 HOH A 195 595 57 HOH HOH . E 5 HOH A 196 596 130 HOH HOH . E 5 HOH A 197 597 128 HOH HOH . E 5 HOH A 198 598 170 HOH HOH . E 5 HOH A 199 599 89 HOH HOH . E 5 HOH A 200 600 126 HOH HOH . E 5 HOH A 201 601 100 HOH HOH . E 5 HOH A 202 602 95 HOH HOH . E 5 HOH A 203 603 107 HOH HOH . E 5 HOH A 204 604 79 HOH HOH . E 5 HOH A 205 605 246 HOH HOH . E 5 HOH A 206 606 21 HOH HOH . E 5 HOH A 207 607 90 HOH HOH . E 5 HOH A 208 608 45 HOH HOH . E 5 HOH A 209 609 39 HOH HOH . E 5 HOH A 210 610 203 HOH HOH . E 5 HOH A 211 611 260 HOH HOH . E 5 HOH A 212 612 93 HOH HOH . E 5 HOH A 213 613 214 HOH HOH . E 5 HOH A 214 614 7 HOH HOH . E 5 HOH A 215 615 60 HOH HOH . E 5 HOH A 216 616 160 HOH HOH . E 5 HOH A 217 617 33 HOH HOH . E 5 HOH A 218 618 180 HOH HOH . E 5 HOH A 219 619 152 HOH HOH . E 5 HOH A 220 620 131 HOH HOH . E 5 HOH A 221 621 200 HOH HOH . E 5 HOH A 222 622 213 HOH HOH . E 5 HOH A 223 623 186 HOH HOH . E 5 HOH A 224 624 42 HOH HOH . E 5 HOH A 225 625 103 HOH HOH . E 5 HOH A 226 626 147 HOH HOH . E 5 HOH A 227 627 226 HOH HOH . E 5 HOH A 228 628 242 HOH HOH . E 5 HOH A 229 629 245 HOH HOH . E 5 HOH A 230 630 122 HOH HOH . E 5 HOH A 231 631 161 HOH HOH . E 5 HOH A 232 632 241 HOH HOH . E 5 HOH A 233 633 165 HOH HOH . E 5 HOH A 234 634 149 HOH HOH . E 5 HOH A 235 635 137 HOH HOH . E 5 HOH A 236 636 175 HOH HOH . E 5 HOH A 237 637 169 HOH HOH . E 5 HOH A 238 638 219 HOH HOH . E 5 HOH A 239 639 159 HOH HOH . E 5 HOH A 240 640 154 HOH HOH . E 5 HOH A 241 641 202 HOH HOH . E 5 HOH A 242 642 190 HOH HOH . E 5 HOH A 243 643 86 HOH HOH . E 5 HOH A 244 644 218 HOH HOH . E 5 HOH A 245 645 209 HOH HOH . E 5 HOH A 246 646 99 HOH HOH . E 5 HOH A 247 647 193 HOH HOH . E 5 HOH A 248 648 80 HOH HOH . E 5 HOH A 249 649 91 HOH HOH . E 5 HOH A 250 650 248 HOH HOH . E 5 HOH A 251 651 238 HOH HOH . E 5 HOH A 252 652 148 HOH HOH . E 5 HOH A 253 653 266 HOH HOH . E 5 HOH A 254 654 279 HOH HOH . E 5 HOH A 255 655 259 HOH HOH . E 5 HOH A 256 656 251 HOH HOH . E 5 HOH A 257 657 271 HOH HOH . E 5 HOH A 258 658 273 HOH HOH . E 5 HOH A 259 659 249 HOH HOH . E 5 HOH A 260 660 258 HOH HOH . E 5 HOH A 261 661 276 HOH HOH . E 5 HOH A 262 662 261 HOH HOH . E 5 HOH A 263 663 257 HOH HOH . E 5 HOH A 264 664 264 HOH HOH . E 5 HOH A 265 665 250 HOH HOH . E 5 HOH A 266 666 268 HOH HOH . E 5 HOH A 267 667 270 HOH HOH . E 5 HOH A 268 668 265 HOH HOH . E 5 HOH A 269 669 269 HOH HOH . E 5 HOH A 270 670 267 HOH HOH . E 5 HOH A 271 671 255 HOH HOH . E 5 HOH A 272 672 272 HOH HOH . E 5 HOH A 273 673 274 HOH HOH . E 5 HOH A 274 674 262 HOH HOH . E 5 HOH A 275 675 254 HOH HOH . E 5 HOH A 276 676 263 HOH HOH . E 5 HOH A 277 677 275 HOH HOH . E 5 HOH A 278 678 253 HOH HOH . E 5 HOH A 279 679 256 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 54.176 _atom_site.Cartn_y 13.665 _atom_site.Cartn_z 30.31 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 279.28 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #