data_5LHG # _model_server_result.job_id F2LheiwnYsATMWVl7RkciQ _model_server_result.datetime_utc '2024-11-25 18:46:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":904}' # _entry.id 5LHG # _exptl.entry_id 5LHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LHG _cell.length_a 120.36 _cell.length_b 180.58 _cell.length_c 234.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NH1 _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 688 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 688 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id O3 _struct_conn.ptnr2_label_comp_id GOL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GOL _struct_conn.ptnr2_auth_seq_id 903 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.298 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 287 n n C1 C2 GOL sing 288 n n C1 H11 GOL sing 289 n n C1 H12 GOL sing 290 n n O1 HO1 GOL sing 291 n n C2 O2 GOL sing 292 n n C2 C3 GOL sing 293 n n C2 H2 GOL sing 294 n n O2 HO2 GOL sing 295 n n C3 O3 GOL sing 296 n n C3 H31 GOL sing 297 n n C3 H32 GOL sing 298 n n O3 HO3 GOL sing 299 n n # _atom_sites.entry_id 5LHG _atom_sites.fract_transf_matrix[1][1] 0.008308 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005538 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004263 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FAD A 1 901 1 FAD FAD . D 4 GOL A 1 902 1 GOL GOL . E 4 GOL A 1 903 3 GOL GOL . F 4 GOL A 1 904 4 GOL GOL . G 4 GOL A 1 905 5 GOL GOL . H 5 6X3 A 1 906 1 6X3 379 . I 5 6X3 A 1 907 2 6X3 379 . J 6 HOH A 1 1001 5 HOH HOH . J 6 HOH A 2 1002 1 HOH HOH . J 6 HOH A 3 1003 2 HOH HOH . J 6 HOH A 4 1004 23 HOH HOH . J 6 HOH A 5 1005 16 HOH HOH . J 6 HOH A 6 1006 10 HOH HOH . J 6 HOH A 7 1007 22 HOH HOH . J 6 HOH A 8 1008 18 HOH HOH . J 6 HOH A 9 1009 11 HOH HOH . J 6 HOH A 10 1010 17 HOH HOH . J 6 HOH A 11 1011 9 HOH HOH . J 6 HOH A 12 1012 3 HOH HOH . J 6 HOH A 13 1013 19 HOH HOH . J 6 HOH A 14 1014 15 HOH HOH . J 6 HOH A 15 1015 12 HOH HOH . J 6 HOH A 16 1016 13 HOH HOH . J 6 HOH A 17 1017 14 HOH HOH . J 6 HOH A 18 1018 25 HOH HOH . J 6 HOH A 19 1019 26 HOH HOH . J 6 HOH A 20 1020 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -11.729 -64.151 -34.709 1 132.73 ? C1 GOL 904 A 1 HETATM 2 O O1 GOL . . . F 4 -12.873 -64.973 -34.769 1 141.1 ? O1 GOL 904 A 1 HETATM 3 C C2 GOL . . . F 4 -11.049 -64.315 -33.356 1 122.67 ? C2 GOL 904 A 1 HETATM 4 O O2 GOL . . . F 4 -11.559 -63.353 -32.459 1 115.9 ? O2 GOL 904 A 1 HETATM 5 C C3 GOL . . . F 4 -11.335 -65.71 -32.814 1 136.5 ? C3 GOL 904 A 1 HETATM 6 O O3 GOL . . . F 4 -12.717 -65.854 -32.577 1 147.33 ? O3 GOL 904 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #