data_5LHM # _model_server_result.job_id 8kg6llf--hsZcFDH1tbWUQ _model_server_result.datetime_utc '2024-11-20 15:36:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lhm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1007}' # _entry.id 5LHM # _exptl.entry_id 5LHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.121 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R,R)-2,3-BUTANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LHM _cell.length_a 64.558 _cell.length_b 64.558 _cell.length_c 118.163 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 47 A GLN 47 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc2 A OE1 GLU 65 A GLU 65 1_555 B MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc3 A OD1 ASP 168 A ASP 168 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc4 A O ALA 211 A ALA 211 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc5 A O GLY 213 A GLY 213 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc6 B MG MG . A MG 1001 1_555 J O HOH . A HOH 1165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? # _chem_comp.formula 'C4 H10 O2' _chem_comp.formula_weight 90.121 _chem_comp.id BU3 _chem_comp.mon_nstd_flag . _chem_comp.name (R,R)-2,3-BUTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C3 BU3 sing 70 n n O6 HO6 BU3 sing 71 n n C3 C4 BU3 sing 72 n n C3 C2 BU3 sing 73 n n C3 H3 BU3 sing 74 n n C4 H41 BU3 sing 75 n n C4 H42 BU3 sing 76 n n C4 H43 BU3 sing 77 n n C2 O5 BU3 sing 78 n n C2 C1 BU3 sing 79 n n C2 H2 BU3 sing 80 n n O5 HO5 BU3 sing 81 n n C1 H11 BU3 sing 82 n n C1 H12 BU3 sing 83 n n C1 H13 BU3 sing 84 n n # _atom_sites.entry_id 5LHM _atom_sites.fract_transf_matrix[1][1] 0.01549 _atom_sites.fract_transf_matrix[1][2] 0.008943 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1001 1001 MG MG . C 2 MG A 1 1002 1002 MG MG . D 3 CL A 1 1003 1003 CL CL . E 4 BU3 A 1 1004 1004 BU3 BU3 . F 4 BU3 A 1 1005 1005 BU3 BU3 . G 4 BU3 A 1 1006 1006 BU3 BU3 . H 4 BU3 A 1 1007 1007 BU3 BU3 . I 4 BU3 A 1 1008 1008 BU3 BU3 . J 5 HOH A 1 1101 24 HOH HOH . J 5 HOH A 2 1102 140 HOH HOH . J 5 HOH A 3 1103 19 HOH HOH . J 5 HOH A 4 1104 6 HOH HOH . J 5 HOH A 5 1105 26 HOH HOH . J 5 HOH A 6 1106 177 HOH HOH . J 5 HOH A 7 1107 89 HOH HOH . J 5 HOH A 8 1108 10 HOH HOH . J 5 HOH A 9 1109 123 HOH HOH . J 5 HOH A 10 1110 150 HOH HOH . J 5 HOH A 11 1111 58 HOH HOH . J 5 HOH A 12 1112 16 HOH HOH . J 5 HOH A 13 1113 151 HOH HOH . J 5 HOH A 14 1114 68 HOH HOH . J 5 HOH A 15 1115 20 HOH HOH . J 5 HOH A 16 1116 3 HOH HOH . J 5 HOH A 17 1117 66 HOH HOH . J 5 HOH A 18 1118 96 HOH HOH . J 5 HOH A 19 1119 201 HOH HOH . J 5 HOH A 20 1120 43 HOH HOH . J 5 HOH A 21 1121 180 HOH HOH . J 5 HOH A 22 1122 36 HOH HOH . J 5 HOH A 23 1123 157 HOH HOH . J 5 HOH A 24 1124 93 HOH HOH . J 5 HOH A 25 1125 27 HOH HOH . J 5 HOH A 26 1126 5 HOH HOH . J 5 HOH A 27 1127 13 HOH HOH . J 5 HOH A 28 1128 85 HOH HOH . J 5 HOH A 29 1129 61 HOH HOH . J 5 HOH A 30 1130 152 HOH HOH . J 5 HOH A 31 1131 65 HOH HOH . J 5 HOH A 32 1132 42 HOH HOH . J 5 HOH A 33 1133 158 HOH HOH . J 5 HOH A 34 1134 25 HOH HOH . J 5 HOH A 35 1135 198 HOH HOH . J 5 HOH A 36 1136 109 HOH HOH . J 5 HOH A 37 1137 84 HOH HOH . J 5 HOH A 38 1138 135 HOH HOH . J 5 HOH A 39 1139 190 HOH HOH . J 5 HOH A 40 1140 72 HOH HOH . J 5 HOH A 41 1141 82 HOH HOH . J 5 HOH A 42 1142 71 HOH HOH . J 5 HOH A 43 1143 163 HOH HOH . J 5 HOH A 44 1144 56 HOH HOH . J 5 HOH A 45 1145 120 HOH HOH . J 5 HOH A 46 1146 15 HOH HOH . J 5 HOH A 47 1147 81 HOH HOH . J 5 HOH A 48 1148 45 HOH HOH . J 5 HOH A 49 1149 116 HOH HOH . J 5 HOH A 50 1150 49 HOH HOH . J 5 HOH A 51 1151 129 HOH HOH . J 5 HOH A 52 1152 8 HOH HOH . J 5 HOH A 53 1153 74 HOH HOH . J 5 HOH A 54 1154 205 HOH HOH . J 5 HOH A 55 1155 98 HOH HOH . J 5 HOH A 56 1156 33 HOH HOH . J 5 HOH A 57 1157 133 HOH HOH . J 5 HOH A 58 1158 106 HOH HOH . J 5 HOH A 59 1159 41 HOH HOH . J 5 HOH A 60 1160 30 HOH HOH . J 5 HOH A 61 1161 125 HOH HOH . J 5 HOH A 62 1162 138 HOH HOH . J 5 HOH A 63 1163 57 HOH HOH . J 5 HOH A 64 1164 34 HOH HOH . J 5 HOH A 65 1165 73 HOH HOH . J 5 HOH A 66 1166 9 HOH HOH . J 5 HOH A 67 1167 51 HOH HOH . J 5 HOH A 68 1168 146 HOH HOH . J 5 HOH A 69 1169 40 HOH HOH . J 5 HOH A 70 1170 17 HOH HOH . J 5 HOH A 71 1171 47 HOH HOH . J 5 HOH A 72 1172 76 HOH HOH . J 5 HOH A 73 1173 7 HOH HOH . J 5 HOH A 74 1174 52 HOH HOH . J 5 HOH A 75 1175 46 HOH HOH . J 5 HOH A 76 1176 18 HOH HOH . J 5 HOH A 77 1177 167 HOH HOH . J 5 HOH A 78 1178 184 HOH HOH . J 5 HOH A 79 1179 38 HOH HOH . J 5 HOH A 80 1180 2 HOH HOH . J 5 HOH A 81 1181 86 HOH HOH . J 5 HOH A 82 1182 48 HOH HOH . J 5 HOH A 83 1183 37 HOH HOH . J 5 HOH A 84 1184 55 HOH HOH . J 5 HOH A 85 1185 70 HOH HOH . J 5 HOH A 86 1186 159 HOH HOH . J 5 HOH A 87 1187 67 HOH HOH . J 5 HOH A 88 1188 12 HOH HOH . J 5 HOH A 89 1189 63 HOH HOH . J 5 HOH A 90 1190 39 HOH HOH . J 5 HOH A 91 1191 103 HOH HOH . J 5 HOH A 92 1192 174 HOH HOH . J 5 HOH A 93 1193 102 HOH HOH . J 5 HOH A 94 1194 53 HOH HOH . J 5 HOH A 95 1195 169 HOH HOH . J 5 HOH A 96 1196 14 HOH HOH . J 5 HOH A 97 1197 91 HOH HOH . J 5 HOH A 98 1198 166 HOH HOH . J 5 HOH A 99 1199 128 HOH HOH . J 5 HOH A 100 1200 60 HOH HOH . J 5 HOH A 101 1201 1 HOH HOH . J 5 HOH A 102 1202 126 HOH HOH . J 5 HOH A 103 1203 21 HOH HOH . J 5 HOH A 104 1204 200 HOH HOH . J 5 HOH A 105 1205 147 HOH HOH . J 5 HOH A 106 1206 124 HOH HOH . J 5 HOH A 107 1207 117 HOH HOH . J 5 HOH A 108 1208 195 HOH HOH . J 5 HOH A 109 1209 31 HOH HOH . J 5 HOH A 110 1210 23 HOH HOH . J 5 HOH A 111 1211 139 HOH HOH . J 5 HOH A 112 1212 113 HOH HOH . J 5 HOH A 113 1213 118 HOH HOH . J 5 HOH A 114 1214 130 HOH HOH . J 5 HOH A 115 1215 32 HOH HOH . J 5 HOH A 116 1216 112 HOH HOH . J 5 HOH A 117 1217 59 HOH HOH . J 5 HOH A 118 1218 29 HOH HOH . J 5 HOH A 119 1219 28 HOH HOH . J 5 HOH A 120 1220 154 HOH HOH . J 5 HOH A 121 1221 87 HOH HOH . J 5 HOH A 122 1222 88 HOH HOH . J 5 HOH A 123 1223 54 HOH HOH . J 5 HOH A 124 1224 110 HOH HOH . J 5 HOH A 125 1225 50 HOH HOH . J 5 HOH A 126 1226 176 HOH HOH . J 5 HOH A 127 1227 196 HOH HOH . J 5 HOH A 128 1228 64 HOH HOH . J 5 HOH A 129 1229 192 HOH HOH . J 5 HOH A 130 1230 100 HOH HOH . J 5 HOH A 131 1231 4 HOH HOH . J 5 HOH A 132 1232 149 HOH HOH . J 5 HOH A 133 1233 127 HOH HOH . J 5 HOH A 134 1234 134 HOH HOH . J 5 HOH A 135 1235 101 HOH HOH . J 5 HOH A 136 1236 94 HOH HOH . J 5 HOH A 137 1237 191 HOH HOH . J 5 HOH A 138 1238 188 HOH HOH . J 5 HOH A 139 1239 164 HOH HOH . J 5 HOH A 140 1240 22 HOH HOH . J 5 HOH A 141 1241 90 HOH HOH . J 5 HOH A 142 1242 92 HOH HOH . J 5 HOH A 143 1243 199 HOH HOH . J 5 HOH A 144 1244 11 HOH HOH . J 5 HOH A 145 1245 137 HOH HOH . J 5 HOH A 146 1246 136 HOH HOH . J 5 HOH A 147 1247 35 HOH HOH . J 5 HOH A 148 1248 69 HOH HOH . J 5 HOH A 149 1249 108 HOH HOH . J 5 HOH A 150 1250 44 HOH HOH . J 5 HOH A 151 1251 148 HOH HOH . J 5 HOH A 152 1252 105 HOH HOH . J 5 HOH A 153 1253 162 HOH HOH . J 5 HOH A 154 1254 189 HOH HOH . J 5 HOH A 155 1255 185 HOH HOH . J 5 HOH A 156 1256 79 HOH HOH . J 5 HOH A 157 1257 155 HOH HOH . J 5 HOH A 158 1258 181 HOH HOH . J 5 HOH A 159 1259 156 HOH HOH . J 5 HOH A 160 1260 178 HOH HOH . J 5 HOH A 161 1261 111 HOH HOH . J 5 HOH A 162 1262 77 HOH HOH . J 5 HOH A 163 1263 153 HOH HOH . J 5 HOH A 164 1264 122 HOH HOH . J 5 HOH A 165 1265 197 HOH HOH . J 5 HOH A 166 1266 75 HOH HOH . J 5 HOH A 167 1267 62 HOH HOH . J 5 HOH A 168 1268 187 HOH HOH . J 5 HOH A 169 1269 171 HOH HOH . J 5 HOH A 170 1270 78 HOH HOH . J 5 HOH A 171 1271 161 HOH HOH . J 5 HOH A 172 1272 80 HOH HOH . J 5 HOH A 173 1273 165 HOH HOH . J 5 HOH A 174 1274 194 HOH HOH . J 5 HOH A 175 1275 175 HOH HOH . J 5 HOH A 176 1276 160 HOH HOH . J 5 HOH A 177 1277 203 HOH HOH . J 5 HOH A 178 1278 186 HOH HOH . J 5 HOH A 179 1279 179 HOH HOH . J 5 HOH A 180 1280 141 HOH HOH . J 5 HOH A 181 1281 99 HOH HOH . J 5 HOH A 182 1282 97 HOH HOH . J 5 HOH A 183 1283 131 HOH HOH . J 5 HOH A 184 1284 202 HOH HOH . J 5 HOH A 185 1285 83 HOH HOH . J 5 HOH A 186 1286 144 HOH HOH . J 5 HOH A 187 1287 142 HOH HOH . J 5 HOH A 188 1288 173 HOH HOH . J 5 HOH A 189 1289 182 HOH HOH . J 5 HOH A 190 1290 170 HOH HOH . J 5 HOH A 191 1291 132 HOH HOH . J 5 HOH A 192 1292 119 HOH HOH . J 5 HOH A 193 1293 145 HOH HOH . J 5 HOH A 194 1294 143 HOH HOH . J 5 HOH A 195 1295 107 HOH HOH . J 5 HOH A 196 1296 114 HOH HOH . J 5 HOH A 197 1297 95 HOH HOH . J 5 HOH A 198 1298 121 HOH HOH . J 5 HOH A 199 1299 172 HOH HOH . J 5 HOH A 200 1300 193 HOH HOH . J 5 HOH A 201 1301 204 HOH HOH . J 5 HOH A 202 1302 115 HOH HOH . J 5 HOH A 203 1303 168 HOH HOH . J 5 HOH A 204 1304 104 HOH HOH . J 5 HOH A 205 1305 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 BU3 . . . H 4 -29.542 20.215 -31.572 1 40.5 ? O6 BU3 1007 A 1 HETATM 2 C C3 BU3 . . . H 4 -30.196 20.188 -32.84 1 42.41 ? C3 BU3 1007 A 1 HETATM 3 C C4 BU3 . . . H 4 -31.668 20.496 -32.646 1 42.49 ? C4 BU3 1007 A 1 HETATM 4 C C2 BU3 . . . H 4 -29.938 18.778 -33.437 1 42.44 ? C2 BU3 1007 A 1 HETATM 5 O O5 BU3 . . . H 4 -28.563 18.7 -33.816 1 40.28 ? O5 BU3 1007 A 1 HETATM 6 C C1 BU3 . . . H 4 -30.847 18.441 -34.603 1 43.14 ? C1 BU3 1007 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #