data_5LHN
#
_model_server_result.job_id            kA0fqZ8S1aSH4khFc6g69A 
_model_server_result.datetime_utc      '2024-11-05 04:08:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lhn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":304}' 
#
_entry.id    5LHN 
#
_exptl.entry_id    5LHN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5LHN 
_cell.length_a            94.67 
_cell.length_b            94.67 
_cell.length_c            121.57 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LHN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 32 A CYS 42 1_555 A SG CYS 48 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf2 A SG CYS 40 A CYS 50 1_555 A SG CYS 111 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 136 A CYS 136 1_555 A SG CYS 205 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 A SG CYS 168 A CYS 168 1_555 A SG CYS 184 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 A SG CYS 195 A CYS 191 1_555 A SG CYS 223 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 B SG CYS 50 B CYS 50 1_555 B SG CYS 113 B CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5LHN 
_atom_sites.fract_transf_matrix[1][1]    0.010563 
_atom_sites.fract_transf_matrix[1][2]    0.006099 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012197 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008226 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 A 1 301 1 SO4 SO4 . 
D 3 SO4 A 1 302 2 SO4 SO4 . 
E 3 SO4 A 1 303 4 SO4 SO4 . 
F 4 EDO A 1 304 2 EDO EDO . 
G 3 SO4 B 1 201 3 SO4 SO4 . 
H 3 SO4 B 1 202 5 SO4 SO4 . 
I 3 SO4 B 1 203 6 SO4 SO4 . 
J 3 SO4 B 1 204 7 SO4 SO4 . 
K 4 EDO B 1 205 1 EDO EDO . 
L 5 HOH A 1 401 53 HOH HOH . 
L 5 HOH A 2 402 32 HOH HOH . 
L 5 HOH A 3 403 1 HOH HOH . 
L 5 HOH A 4 404 40 HOH HOH . 
L 5 HOH A 5 405 48 HOH HOH . 
L 5 HOH A 6 406 17 HOH HOH . 
L 5 HOH A 7 407 35 HOH HOH . 
L 5 HOH A 8 408 6 HOH HOH . 
L 5 HOH A 9 409 37 HOH HOH . 
L 5 HOH A 10 410 39 HOH HOH . 
L 5 HOH A 11 411 41 HOH HOH . 
L 5 HOH A 12 412 33 HOH HOH . 
L 5 HOH A 13 413 15 HOH HOH . 
L 5 HOH A 14 414 2 HOH HOH . 
L 5 HOH A 15 415 42 HOH HOH . 
L 5 HOH A 16 416 8 HOH HOH . 
L 5 HOH A 17 417 14 HOH HOH . 
L 5 HOH A 18 418 16 HOH HOH . 
L 5 HOH A 19 419 12 HOH HOH . 
L 5 HOH A 20 420 36 HOH HOH . 
L 5 HOH A 21 421 52 HOH HOH . 
L 5 HOH A 22 422 5 HOH HOH . 
L 5 HOH A 23 423 34 HOH HOH . 
L 5 HOH A 24 424 13 HOH HOH . 
L 5 HOH A 25 425 7 HOH HOH . 
L 5 HOH A 26 426 3 HOH HOH . 
L 5 HOH A 27 427 9 HOH HOH . 
L 5 HOH A 28 428 57 HOH HOH . 
L 5 HOH A 29 429 4 HOH HOH . 
L 5 HOH A 30 430 43 HOH HOH . 
L 5 HOH A 31 431 50 HOH HOH . 
L 5 HOH A 32 432 11 HOH HOH . 
L 5 HOH A 33 433 38 HOH HOH . 
L 5 HOH A 34 434 51 HOH HOH . 
L 5 HOH A 35 435 10 HOH HOH . 
L 5 HOH A 36 436 56 HOH HOH . 
L 5 HOH A 37 437 55 HOH HOH . 
L 5 HOH A 38 438 31 HOH HOH . 
M 5 HOH B 1 301 46 HOH HOH . 
M 5 HOH B 2 302 22 HOH HOH . 
M 5 HOH B 3 303 23 HOH HOH . 
M 5 HOH B 4 304 49 HOH HOH . 
M 5 HOH B 5 305 19 HOH HOH . 
M 5 HOH B 6 306 26 HOH HOH . 
M 5 HOH B 7 307 29 HOH HOH . 
M 5 HOH B 8 308 30 HOH HOH . 
M 5 HOH B 9 309 27 HOH HOH . 
M 5 HOH B 10 310 25 HOH HOH . 
M 5 HOH B 11 311 44 HOH HOH . 
M 5 HOH B 12 312 28 HOH HOH . 
M 5 HOH B 13 313 24 HOH HOH . 
M 5 HOH B 14 314 20 HOH HOH . 
M 5 HOH B 15 315 21 HOH HOH . 
M 5 HOH B 16 316 18 HOH HOH . 
M 5 HOH B 17 317 54 HOH HOH . 
M 5 HOH B 18 318 45 HOH HOH . 
M 5 HOH B 19 319 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 4 -37.023 20.797 -53.354 1 108.46 ? C1 EDO 304 A 1 
HETATM 2 O O1 EDO . . . F 4 -36.471 19.62 -52.756 1 117.26 ? O1 EDO 304 A 1 
HETATM 3 C C2 EDO . . . F 4 -36.253 22.059 -52.983 1 119.76 ? C2 EDO 304 A 1 
HETATM 4 O O2 EDO . . . F 4 -37.113 23.191 -53.174 1 93.65 ? O2 EDO 304 A 1 
HETATM 5 H H11 EDO . . . F 4 -37.019 20.681 -54.44 1 130.15 ? H11 EDO 304 A 1 
HETATM 6 H H12 EDO . . . F 4 -38.063 20.905 -53.038 1 130.15 ? H12 EDO 304 A 1 
HETATM 7 H HO1 EDO . . . F 4 -36.992 18.849 -53.02 1 140.71 ? HO1 EDO 304 A 1 
HETATM 8 H H21 EDO . . . F 4 -35.931 22.007 -51.941 1 143.71 ? H21 EDO 304 A 1 
HETATM 9 H H22 EDO . . . F 4 -35.366 22.154 -53.614 1 143.71 ? H22 EDO 304 A 1 
HETATM 10 H HO2 EDO . . . F 4 -36.636 24 -52.942 1 112.38 ? HO2 EDO 304 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#