data_5LHQ
#
_model_server_result.job_id            gz-5DRsfs42n3wFyAmXpAQ 
_model_server_result.datetime_utc      '2025-07-16 03:17:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lhq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5LHQ 
#
_exptl.entry_id    5LHQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              395.862 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5LHQ 
_cell.length_a            94.25 
_cell.length_b            94.25 
_cell.length_c            122.99 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LHQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 32 A CYS 42 1_555 A SG CYS 48 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf2 A SG CYS 40 A CYS 50 1_555 A SG CYS 111 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 136 A CYS 136 1_555 A SG CYS 205 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 A SG CYS 168 A CYS 168 1_555 A SG CYS 184 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 A SG CYS 195 A CYS 191 1_555 A SG CYS 223 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf6 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
disulf ? disulf7 B SG CYS 50 B CYS 50 1_555 B SG CYS 113 B CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
covale ? covale1 A NE2 HIS 47 A HIS 57 1_555 C C3 0GJ . A 0GJ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? 
covale ? covale2 A OG SER 199 A SER 195 1_555 C C2 0GJ . A 0GJ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.528 ? 
#
_chem_comp.formula           'C14 H28 Cl N6 O5 1' 
_chem_comp.formula_weight    395.862 
_chem_comp.id                0GJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA 0GJ sing 1 n n 
N H 0GJ sing 2 n n 
N H2 0GJ sing 3 n n 
CA C 0GJ sing 4 n n 
CA CB 0GJ sing 5 n n 
CA HA 0GJ sing 6 n n 
C O 0GJ doub 7 n n 
C N1 0GJ sing 8 n n 
CB CG 0GJ sing 9 n n 
CB HB2 0GJ sing 10 n n 
CB HB3 0GJ sing 11 n n 
CG CD 0GJ sing 12 n n 
CG HG2 0GJ sing 13 n n 
CG HG3 0GJ sing 14 n n 
CD OE1 0GJ doub 15 n n 
CD OE2 0GJ sing 16 n n 
OE2 HE2 0GJ sing 17 n n 
N1 CA1 0GJ sing 18 n n 
N1 H1 0GJ sing 19 n n 
CA1 C1 0GJ sing 20 n n 
CA1 HA2 0GJ sing 21 n n 
CA1 HA3 0GJ sing 22 n n 
C1 O1 0GJ doub 23 n n 
C1 N2 0GJ sing 24 n n 
N2 CA2 0GJ sing 25 n n 
N2 H3 0GJ sing 26 n n 
CA2 C2 0GJ sing 27 n n 
CA2 CB1 0GJ sing 28 n n 
CA2 HA1 0GJ sing 29 n n 
C2 O2 0GJ sing 30 n n 
C2 C3 0GJ sing 31 n n 
CB1 CG1 0GJ sing 32 n n 
CB1 HB21 0GJ sing 33 n n 
CB1 HB31 0GJ sing 34 n n 
CG1 CD1 0GJ sing 35 n n 
CG1 HG21 0GJ sing 36 n n 
CG1 HG31 0GJ sing 37 n n 
CD1 NE 0GJ sing 38 n n 
CD1 HD2 0GJ sing 39 n n 
CD1 HD3 0GJ sing 40 n n 
NE CZ 0GJ sing 41 n n 
NE HE 0GJ sing 42 n n 
CZ NH1 0GJ sing 43 n n 
CZ NH2 0GJ doub 44 n n 
NH1 HH11 0GJ sing 45 n n 
NH1 HH12 0GJ sing 46 n n 
NH2 HH21 0GJ sing 47 n n 
NH2 HH22 0GJ sing 48 n n 
C3 H11 0GJ sing 49 n n 
C3 H21 0GJ sing 50 n n 
CL C3 0GJ sing 51 n n 
C2 H27 0GJ sing 52 n n 
O2 H28 0GJ sing 53 n n 
#
_atom_sites.entry_id                     5LHQ 
_atom_sites.fract_transf_matrix[1][1]    0.01061 
_atom_sites.fract_transf_matrix[1][2]    0.006126 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012251 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008131 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 0GJ A 1 301 1 0GJ 0GJ . 
D 4 SO4 A 1 302 1 SO4 SO4 . 
E 4 SO4 A 1 303 2 SO4 SO4 . 
F 4 SO4 A 1 304 3 SO4 SO4 . 
G 4 SO4 A 1 305 6 SO4 SO4 . 
H 4 SO4 A 1 306 7 SO4 SO4 . 
I 4 SO4 A 1 307 8 SO4 SO4 . 
J 5 EDO A 1 308 1 EDO EDO . 
K 5 EDO A 1 309 2 EDO EDO . 
L 4 SO4 B 1 201 4 SO4 SO4 . 
M 4 SO4 B 1 202 5 SO4 SO4 . 
N 4 SO4 B 1 203 9 SO4 SO4 . 
O 4 SO4 B 1 204 10 SO4 SO4 . 
P 4 SO4 B 1 205 11 SO4 SO4 . 
Q 6 HOH A 1 401 123 HOH HOH . 
Q 6 HOH A 2 402 2 HOH HOH . 
Q 6 HOH A 3 403 34 HOH HOH . 
Q 6 HOH A 4 404 71 HOH HOH . 
Q 6 HOH A 5 405 38 HOH HOH . 
Q 6 HOH A 6 406 14 HOH HOH . 
Q 6 HOH A 7 407 107 HOH HOH . 
Q 6 HOH A 8 408 33 HOH HOH . 
Q 6 HOH A 9 409 113 HOH HOH . 
Q 6 HOH A 10 410 84 HOH HOH . 
Q 6 HOH A 11 411 26 HOH HOH . 
Q 6 HOH A 12 412 92 HOH HOH . 
Q 6 HOH A 13 413 81 HOH HOH . 
Q 6 HOH A 14 414 122 HOH HOH . 
Q 6 HOH A 15 415 65 HOH HOH . 
Q 6 HOH A 16 416 7 HOH HOH . 
Q 6 HOH A 17 417 76 HOH HOH . 
Q 6 HOH A 18 418 69 HOH HOH . 
Q 6 HOH A 19 419 112 HOH HOH . 
Q 6 HOH A 20 420 85 HOH HOH . 
Q 6 HOH A 21 421 29 HOH HOH . 
Q 6 HOH A 22 422 18 HOH HOH . 
Q 6 HOH A 23 423 28 HOH HOH . 
Q 6 HOH A 24 424 4 HOH HOH . 
Q 6 HOH A 25 425 66 HOH HOH . 
Q 6 HOH A 26 426 16 HOH HOH . 
Q 6 HOH A 27 427 17 HOH HOH . 
Q 6 HOH A 28 428 77 HOH HOH . 
Q 6 HOH A 29 429 45 HOH HOH . 
Q 6 HOH A 30 430 80 HOH HOH . 
Q 6 HOH A 31 431 1 HOH HOH . 
Q 6 HOH A 32 432 70 HOH HOH . 
Q 6 HOH A 33 433 114 HOH HOH . 
Q 6 HOH A 34 434 6 HOH HOH . 
Q 6 HOH A 35 435 68 HOH HOH . 
Q 6 HOH A 36 436 36 HOH HOH . 
Q 6 HOH A 37 437 82 HOH HOH . 
Q 6 HOH A 38 438 79 HOH HOH . 
Q 6 HOH A 39 439 74 HOH HOH . 
Q 6 HOH A 40 440 12 HOH HOH . 
Q 6 HOH A 41 441 25 HOH HOH . 
Q 6 HOH A 42 442 106 HOH HOH . 
Q 6 HOH A 43 443 19 HOH HOH . 
Q 6 HOH A 44 444 89 HOH HOH . 
Q 6 HOH A 45 445 32 HOH HOH . 
Q 6 HOH A 46 446 3 HOH HOH . 
Q 6 HOH A 47 447 87 HOH HOH . 
Q 6 HOH A 48 448 35 HOH HOH . 
Q 6 HOH A 49 449 5 HOH HOH . 
Q 6 HOH A 50 450 73 HOH HOH . 
Q 6 HOH A 51 451 67 HOH HOH . 
Q 6 HOH A 52 452 27 HOH HOH . 
Q 6 HOH A 53 453 22 HOH HOH . 
Q 6 HOH A 54 454 109 HOH HOH . 
Q 6 HOH A 55 455 75 HOH HOH . 
Q 6 HOH A 56 456 91 HOH HOH . 
Q 6 HOH A 57 457 86 HOH HOH . 
Q 6 HOH A 58 458 10 HOH HOH . 
Q 6 HOH A 59 459 13 HOH HOH . 
Q 6 HOH A 60 460 23 HOH HOH . 
Q 6 HOH A 61 461 37 HOH HOH . 
Q 6 HOH A 62 462 115 HOH HOH . 
Q 6 HOH A 63 463 9 HOH HOH . 
Q 6 HOH A 64 464 30 HOH HOH . 
Q 6 HOH A 65 465 83 HOH HOH . 
Q 6 HOH A 66 466 11 HOH HOH . 
Q 6 HOH A 67 467 90 HOH HOH . 
Q 6 HOH A 68 468 108 HOH HOH . 
Q 6 HOH A 69 469 72 HOH HOH . 
Q 6 HOH A 70 470 120 HOH HOH . 
R 6 HOH B 1 301 46 HOH HOH . 
R 6 HOH B 2 302 116 HOH HOH . 
R 6 HOH B 3 303 39 HOH HOH . 
R 6 HOH B 4 304 41 HOH HOH . 
R 6 HOH B 5 305 60 HOH HOH . 
R 6 HOH B 6 306 20 HOH HOH . 
R 6 HOH B 7 307 102 HOH HOH . 
R 6 HOH B 8 308 52 HOH HOH . 
R 6 HOH B 9 309 58 HOH HOH . 
R 6 HOH B 10 310 43 HOH HOH . 
R 6 HOH B 11 311 15 HOH HOH . 
R 6 HOH B 12 312 40 HOH HOH . 
R 6 HOH B 13 313 105 HOH HOH . 
R 6 HOH B 14 314 100 HOH HOH . 
R 6 HOH B 15 315 59 HOH HOH . 
R 6 HOH B 16 316 98 HOH HOH . 
R 6 HOH B 17 317 96 HOH HOH . 
R 6 HOH B 18 318 97 HOH HOH . 
R 6 HOH B 19 319 42 HOH HOH . 
R 6 HOH B 20 320 101 HOH HOH . 
R 6 HOH B 21 321 48 HOH HOH . 
R 6 HOH B 22 322 31 HOH HOH . 
R 6 HOH B 23 323 104 HOH HOH . 
R 6 HOH B 24 324 103 HOH HOH . 
R 6 HOH B 25 325 8 HOH HOH . 
R 6 HOH B 26 326 49 HOH HOH . 
R 6 HOH B 27 327 54 HOH HOH . 
R 6 HOH B 28 328 44 HOH HOH . 
R 6 HOH B 29 329 56 HOH HOH . 
R 6 HOH B 30 330 24 HOH HOH . 
R 6 HOH B 31 331 63 HOH HOH . 
R 6 HOH B 32 332 55 HOH HOH . 
R 6 HOH B 33 333 78 HOH HOH . 
R 6 HOH B 34 334 50 HOH HOH . 
R 6 HOH B 35 335 21 HOH HOH . 
R 6 HOH B 36 336 110 HOH HOH . 
R 6 HOH B 37 337 51 HOH HOH . 
R 6 HOH B 38 338 62 HOH HOH . 
R 6 HOH B 39 339 88 HOH HOH . 
R 6 HOH B 40 340 64 HOH HOH . 
R 6 HOH B 41 341 61 HOH HOH . 
R 6 HOH B 42 342 99 HOH HOH . 
R 6 HOH B 43 343 94 HOH HOH . 
R 6 HOH B 44 344 57 HOH HOH . 
R 6 HOH B 45 345 93 HOH HOH . 
R 6 HOH B 46 346 117 HOH HOH . 
R 6 HOH B 47 347 95 HOH HOH . 
R 6 HOH B 48 348 121 HOH HOH . 
R 6 HOH B 49 349 53 HOH HOH . 
R 6 HOH B 50 350 47 HOH HOH . 
R 6 HOH B 51 351 119 HOH HOH . 
R 6 HOH B 52 352 118 HOH HOH . 
R 6 HOH B 53 353 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N 0GJ . . . C 3 197.487 213.701 155.136 1 73.37 ? N 0GJ 301 A 1 
HETATM 2 C CA 0GJ . . . C 3 196.324 213.358 155.876 1 74.49 ? CA 0GJ 301 A 1 
HETATM 3 C C 0GJ . . . C 3 195.077 213.75 155.079 1 73.92 ? C 0GJ 301 A 1 
HETATM 4 O O 0GJ . . . C 3 194.753 214.925 154.992 1 62.63 ? O 0GJ 301 A 1 
HETATM 5 C CB 0GJ . . . C 3 196.333 214.093 157.192 1 81.51 ? CB 0GJ 301 A 1 
HETATM 6 C CG 0GJ . . . C 3 195.449 213.364 158.181 1 85.67 ? CG 0GJ 301 A 1 
HETATM 7 C CD 0GJ . . . C 3 195.019 214.317 159.272 1 98.43 ? CD 0GJ 301 A 1 
HETATM 8 O OE1 0GJ . . . C 3 193.949 214.106 159.908 1 104.96 ? OE1 0GJ 301 A 1 
HETATM 9 O OE2 0GJ . . . C 3 195.724 215.316 159.542 1 101.72 ? OE2 0GJ 301 A 1 
HETATM 10 N N1 0GJ . . . C 3 194.28 212.725 154.425 1 74.05 ? N1 0GJ 301 A 1 
HETATM 11 C CA1 0GJ . . . C 3 193.098 213.097 153.67 1 57.55 ? CA1 0GJ 301 A 1 
HETATM 12 C C1 0GJ . . . C 3 192.044 213.723 154.631 1 62.37 ? C1 0GJ 301 A 1 
HETATM 13 O O1 0GJ . . . C 3 191.926 213.293 155.765 1 68.85 ? O1 0GJ 301 A 1 
HETATM 14 N N2 0GJ . . . C 3 191.204 214.816 154.177 1 55.52 ? N2 0GJ 301 A 1 
HETATM 15 C CA2 0GJ . . . C 3 190.238 215.388 155.06 1 68.72 ? CA2 0GJ 301 A 1 
HETATM 16 C C2 0GJ . . . C 3 188.853 214.905 154.674 1 77.54 ? C2 0GJ 301 A 1 
HETATM 17 O O2 0GJ . . . C 3 187.915 215.362 155.623 1 58.13 ? O2 0GJ 301 A 1 
HETATM 18 C CB1 0GJ . . . C 3 190.293 216.907 154.956 1 65.58 ? CB1 0GJ 301 A 1 
HETATM 19 C CG1 0GJ . . . C 3 191.684 217.402 155.386 1 70.3 ? CG1 0GJ 301 A 1 
HETATM 20 C CD1 0GJ . . . C 3 191.97 218.772 154.725 1 57.54 ? CD1 0GJ 301 A 1 
HETATM 21 N NE 0GJ . . . C 3 193.383 218.9 154.478 1 63.73 ? NE 0GJ 301 A 1 
HETATM 22 C CZ 0GJ . . . C 3 194.032 220.184 154.637 1 63.48 ? CZ 0GJ 301 A 1 
HETATM 23 N NH1 0GJ . . . C 3 195.444 220.311 154.389 1 69.04 ? NH1 0GJ 301 A 1 
HETATM 24 N NH2 0GJ . . . C 3 193.324 221.245 155.012 1 59.54 ? NH2 0GJ 301 A 1 
HETATM 25 C C3 0GJ . . . C 3 188.837 213.394 154.638 1 59.11 ? C3 0GJ 301 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           365 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           25 
#