data_5LI9 # _model_server_result.job_id nSOWX6rBMLL1KYJ6FAKurQ _model_server_result.datetime_utc '2024-11-04 20:33:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5li9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":608}' # _entry.id 5LI9 # _exptl.entry_id 5LI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LI9 _cell.length_a 61.806 _cell.length_b 65.143 _cell.length_c 87.411 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 165 A SER 411 1_555 A N TPO 166 A TPO 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C TPO 166 A TPO 412 1_555 A N PHE 167 A PHE 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C LEU 317 A LEU 563 1_555 A N TPO 318 A TPO 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C TPO 318 A TPO 564 1_555 A N PRO 319 A PRO 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 140 n n C O2 FMT sing 141 n n C H FMT sing 142 n n O2 HO2 FMT sing 143 n n # _atom_sites.entry_id 5LI9 _atom_sites.fract_transf_matrix[1][1] 0.01618 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015351 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACP A 1 601 1 ACP ACP . C 3 FMT A 1 602 1 FMT FMT . D 3 FMT A 1 603 2 FMT FMT . E 3 FMT A 1 604 4 FMT FMT . F 3 FMT A 1 605 6 FMT FMT . G 3 FMT A 1 606 8 FMT FMT . H 3 FMT A 1 607 10 FMT FMT . I 3 FMT A 1 608 11 FMT FMT . J 4 IMD A 1 609 1 IMD IMD . K 5 MRD A 1 610 1 MRD MPD . L 6 PEG A 1 611 2 PEG PEG . M 6 PEG A 1 612 3 PEG PEG . N 6 PEG A 1 613 4 PEG PEG . O 7 ACT A 1 614 1 ACT ACT . P 7 ACT A 1 615 2 ACT ACT . Q 8 HOH A 1 701 247 HOH HOH . Q 8 HOH A 2 702 41 HOH HOH . Q 8 HOH A 3 703 190 HOH HOH . Q 8 HOH A 4 704 245 HOH HOH . Q 8 HOH A 5 705 153 HOH HOH . Q 8 HOH A 6 706 185 HOH HOH . Q 8 HOH A 7 707 234 HOH HOH . Q 8 HOH A 8 708 132 HOH HOH . Q 8 HOH A 9 709 149 HOH HOH . Q 8 HOH A 10 710 222 HOH HOH . Q 8 HOH A 11 711 85 HOH HOH . Q 8 HOH A 12 712 126 HOH HOH . Q 8 HOH A 13 713 118 HOH HOH . Q 8 HOH A 14 714 145 HOH HOH . Q 8 HOH A 15 715 80 HOH HOH . Q 8 HOH A 16 716 213 HOH HOH . Q 8 HOH A 17 717 139 HOH HOH . Q 8 HOH A 18 718 123 HOH HOH . Q 8 HOH A 19 719 83 HOH HOH . Q 8 HOH A 20 720 136 HOH HOH . Q 8 HOH A 21 721 144 HOH HOH . Q 8 HOH A 22 722 134 HOH HOH . Q 8 HOH A 23 723 176 HOH HOH . Q 8 HOH A 24 724 58 HOH HOH . Q 8 HOH A 25 725 55 HOH HOH . Q 8 HOH A 26 726 165 HOH HOH . Q 8 HOH A 27 727 217 HOH HOH . Q 8 HOH A 28 728 69 HOH HOH . Q 8 HOH A 29 729 42 HOH HOH . Q 8 HOH A 30 730 173 HOH HOH . Q 8 HOH A 31 731 59 HOH HOH . Q 8 HOH A 32 732 71 HOH HOH . Q 8 HOH A 33 733 89 HOH HOH . Q 8 HOH A 34 734 31 HOH HOH . Q 8 HOH A 35 735 20 HOH HOH . Q 8 HOH A 36 736 62 HOH HOH . Q 8 HOH A 37 737 122 HOH HOH . Q 8 HOH A 38 738 28 HOH HOH . Q 8 HOH A 39 739 120 HOH HOH . Q 8 HOH A 40 740 18 HOH HOH . Q 8 HOH A 41 741 113 HOH HOH . Q 8 HOH A 42 742 138 HOH HOH . Q 8 HOH A 43 743 227 HOH HOH . Q 8 HOH A 44 744 105 HOH HOH . Q 8 HOH A 45 745 75 HOH HOH . Q 8 HOH A 46 746 111 HOH HOH . Q 8 HOH A 47 747 154 HOH HOH . Q 8 HOH A 48 748 3 HOH HOH . Q 8 HOH A 49 749 101 HOH HOH . Q 8 HOH A 50 750 103 HOH HOH . Q 8 HOH A 51 751 143 HOH HOH . Q 8 HOH A 52 752 216 HOH HOH . Q 8 HOH A 53 753 104 HOH HOH . Q 8 HOH A 54 754 219 HOH HOH . Q 8 HOH A 55 755 231 HOH HOH . Q 8 HOH A 56 756 8 HOH HOH . Q 8 HOH A 57 757 47 HOH HOH . Q 8 HOH A 58 758 21 HOH HOH . Q 8 HOH A 59 759 36 HOH HOH . Q 8 HOH A 60 760 147 HOH HOH . Q 8 HOH A 61 761 112 HOH HOH . Q 8 HOH A 62 762 96 HOH HOH . Q 8 HOH A 63 763 37 HOH HOH . Q 8 HOH A 64 764 10 HOH HOH . Q 8 HOH A 65 765 61 HOH HOH . Q 8 HOH A 66 766 22 HOH HOH . Q 8 HOH A 67 767 17 HOH HOH . Q 8 HOH A 68 768 13 HOH HOH . Q 8 HOH A 69 769 193 HOH HOH . Q 8 HOH A 70 770 11 HOH HOH . Q 8 HOH A 71 771 125 HOH HOH . Q 8 HOH A 72 772 15 HOH HOH . Q 8 HOH A 73 773 133 HOH HOH . Q 8 HOH A 74 774 38 HOH HOH . Q 8 HOH A 75 775 45 HOH HOH . Q 8 HOH A 76 776 86 HOH HOH . Q 8 HOH A 77 777 6 HOH HOH . Q 8 HOH A 78 778 34 HOH HOH . Q 8 HOH A 79 779 44 HOH HOH . Q 8 HOH A 80 780 23 HOH HOH . Q 8 HOH A 81 781 159 HOH HOH . Q 8 HOH A 82 782 124 HOH HOH . Q 8 HOH A 83 783 73 HOH HOH . Q 8 HOH A 84 784 233 HOH HOH . Q 8 HOH A 85 785 49 HOH HOH . Q 8 HOH A 86 786 115 HOH HOH . Q 8 HOH A 87 787 63 HOH HOH . Q 8 HOH A 88 788 194 HOH HOH . Q 8 HOH A 89 789 203 HOH HOH . Q 8 HOH A 90 790 81 HOH HOH . Q 8 HOH A 91 791 119 HOH HOH . Q 8 HOH A 92 792 142 HOH HOH . Q 8 HOH A 93 793 92 HOH HOH . Q 8 HOH A 94 794 102 HOH HOH . Q 8 HOH A 95 795 202 HOH HOH . Q 8 HOH A 96 796 64 HOH HOH . Q 8 HOH A 97 797 48 HOH HOH . Q 8 HOH A 98 798 128 HOH HOH . Q 8 HOH A 99 799 206 HOH HOH . Q 8 HOH A 100 800 91 HOH HOH . Q 8 HOH A 101 801 1 HOH HOH . Q 8 HOH A 102 802 39 HOH HOH . Q 8 HOH A 103 803 9 HOH HOH . Q 8 HOH A 104 804 191 HOH HOH . Q 8 HOH A 105 805 156 HOH HOH . Q 8 HOH A 106 806 182 HOH HOH . Q 8 HOH A 107 807 56 HOH HOH . Q 8 HOH A 108 808 74 HOH HOH . Q 8 HOH A 109 809 243 HOH HOH . Q 8 HOH A 110 810 29 HOH HOH . Q 8 HOH A 111 811 84 HOH HOH . Q 8 HOH A 112 812 16 HOH HOH . Q 8 HOH A 113 813 230 HOH HOH . Q 8 HOH A 114 814 77 HOH HOH . Q 8 HOH A 115 815 238 HOH HOH . Q 8 HOH A 116 816 163 HOH HOH . Q 8 HOH A 117 817 2 HOH HOH . Q 8 HOH A 118 818 174 HOH HOH . Q 8 HOH A 119 819 5 HOH HOH . Q 8 HOH A 120 820 221 HOH HOH . Q 8 HOH A 121 821 146 HOH HOH . Q 8 HOH A 122 822 172 HOH HOH . Q 8 HOH A 123 823 25 HOH HOH . Q 8 HOH A 124 824 186 HOH HOH . Q 8 HOH A 125 825 57 HOH HOH . Q 8 HOH A 126 826 35 HOH HOH . Q 8 HOH A 127 827 97 HOH HOH . Q 8 HOH A 128 828 43 HOH HOH . Q 8 HOH A 129 829 99 HOH HOH . Q 8 HOH A 130 830 178 HOH HOH . Q 8 HOH A 131 831 204 HOH HOH . Q 8 HOH A 132 832 53 HOH HOH . Q 8 HOH A 133 833 150 HOH HOH . Q 8 HOH A 134 834 220 HOH HOH . Q 8 HOH A 135 835 225 HOH HOH . Q 8 HOH A 136 836 30 HOH HOH . Q 8 HOH A 137 837 51 HOH HOH . Q 8 HOH A 138 838 158 HOH HOH . Q 8 HOH A 139 839 14 HOH HOH . Q 8 HOH A 140 840 26 HOH HOH . Q 8 HOH A 141 841 72 HOH HOH . Q 8 HOH A 142 842 106 HOH HOH . Q 8 HOH A 143 843 12 HOH HOH . Q 8 HOH A 144 844 66 HOH HOH . Q 8 HOH A 145 845 24 HOH HOH . Q 8 HOH A 146 846 201 HOH HOH . Q 8 HOH A 147 847 4 HOH HOH . Q 8 HOH A 148 848 188 HOH HOH . Q 8 HOH A 149 849 78 HOH HOH . Q 8 HOH A 150 850 127 HOH HOH . Q 8 HOH A 151 851 65 HOH HOH . Q 8 HOH A 152 852 141 HOH HOH . Q 8 HOH A 153 853 40 HOH HOH . Q 8 HOH A 154 854 181 HOH HOH . Q 8 HOH A 155 855 195 HOH HOH . Q 8 HOH A 156 856 218 HOH HOH . Q 8 HOH A 157 857 32 HOH HOH . Q 8 HOH A 158 858 19 HOH HOH . Q 8 HOH A 159 859 161 HOH HOH . Q 8 HOH A 160 860 46 HOH HOH . Q 8 HOH A 161 861 137 HOH HOH . Q 8 HOH A 162 862 214 HOH HOH . Q 8 HOH A 163 863 7 HOH HOH . Q 8 HOH A 164 864 108 HOH HOH . Q 8 HOH A 165 865 60 HOH HOH . Q 8 HOH A 166 866 187 HOH HOH . Q 8 HOH A 167 867 129 HOH HOH . Q 8 HOH A 168 868 171 HOH HOH . Q 8 HOH A 169 869 121 HOH HOH . Q 8 HOH A 170 870 244 HOH HOH . Q 8 HOH A 171 871 117 HOH HOH . Q 8 HOH A 172 872 33 HOH HOH . Q 8 HOH A 173 873 241 HOH HOH . Q 8 HOH A 174 874 70 HOH HOH . Q 8 HOH A 175 875 179 HOH HOH . Q 8 HOH A 176 876 242 HOH HOH . Q 8 HOH A 177 877 152 HOH HOH . Q 8 HOH A 178 878 82 HOH HOH . Q 8 HOH A 179 879 98 HOH HOH . Q 8 HOH A 180 880 184 HOH HOH . Q 8 HOH A 181 881 79 HOH HOH . Q 8 HOH A 182 882 151 HOH HOH . Q 8 HOH A 183 883 168 HOH HOH . Q 8 HOH A 184 884 100 HOH HOH . Q 8 HOH A 185 885 116 HOH HOH . Q 8 HOH A 186 886 131 HOH HOH . Q 8 HOH A 187 887 50 HOH HOH . Q 8 HOH A 188 888 110 HOH HOH . Q 8 HOH A 189 889 135 HOH HOH . Q 8 HOH A 190 890 157 HOH HOH . Q 8 HOH A 191 891 215 HOH HOH . Q 8 HOH A 192 892 95 HOH HOH . Q 8 HOH A 193 893 140 HOH HOH . Q 8 HOH A 194 894 232 HOH HOH . Q 8 HOH A 195 895 177 HOH HOH . Q 8 HOH A 196 896 27 HOH HOH . Q 8 HOH A 197 897 164 HOH HOH . Q 8 HOH A 198 898 205 HOH HOH . Q 8 HOH A 199 899 155 HOH HOH . Q 8 HOH A 200 900 93 HOH HOH . Q 8 HOH A 201 901 54 HOH HOH . Q 8 HOH A 202 902 114 HOH HOH . Q 8 HOH A 203 903 183 HOH HOH . Q 8 HOH A 204 904 67 HOH HOH . Q 8 HOH A 205 905 107 HOH HOH . Q 8 HOH A 206 906 246 HOH HOH . Q 8 HOH A 207 907 170 HOH HOH . Q 8 HOH A 208 908 52 HOH HOH . Q 8 HOH A 209 909 76 HOH HOH . Q 8 HOH A 210 910 94 HOH HOH . Q 8 HOH A 211 911 87 HOH HOH . Q 8 HOH A 212 912 192 HOH HOH . Q 8 HOH A 213 913 130 HOH HOH . Q 8 HOH A 214 914 68 HOH HOH . Q 8 HOH A 215 915 167 HOH HOH . Q 8 HOH A 216 916 240 HOH HOH . Q 8 HOH A 217 917 226 HOH HOH . Q 8 HOH A 218 918 175 HOH HOH . Q 8 HOH A 219 919 236 HOH HOH . Q 8 HOH A 220 920 166 HOH HOH . Q 8 HOH A 221 921 209 HOH HOH . Q 8 HOH A 222 922 160 HOH HOH . Q 8 HOH A 223 923 169 HOH HOH . Q 8 HOH A 224 924 223 HOH HOH . Q 8 HOH A 225 925 196 HOH HOH . Q 8 HOH A 226 926 148 HOH HOH . Q 8 HOH A 227 927 198 HOH HOH . Q 8 HOH A 228 928 88 HOH HOH . Q 8 HOH A 229 929 224 HOH HOH . Q 8 HOH A 230 930 90 HOH HOH . Q 8 HOH A 231 931 239 HOH HOH . Q 8 HOH A 232 932 162 HOH HOH . Q 8 HOH A 233 933 199 HOH HOH . Q 8 HOH A 234 934 207 HOH HOH . Q 8 HOH A 235 935 228 HOH HOH . Q 8 HOH A 236 936 235 HOH HOH . Q 8 HOH A 237 937 109 HOH HOH . Q 8 HOH A 238 938 210 HOH HOH . Q 8 HOH A 239 939 200 HOH HOH . Q 8 HOH A 240 940 180 HOH HOH . Q 8 HOH A 241 941 237 HOH HOH . Q 8 HOH A 242 942 197 HOH HOH . Q 8 HOH A 243 943 208 HOH HOH . Q 8 HOH A 244 944 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . I 3 -12.867 -8.899 -5.017 1 55.92 ? C FMT 608 A 1 HETATM 2 O O1 FMT . . . I 3 -13.446 -8.139 -4.24 1 54.64 ? O1 FMT 608 A 1 HETATM 3 O O2 FMT . . . I 3 -11.845 -8.609 -5.64 1 56.3 ? O2 FMT 608 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 3 #