data_5LIH
#
_model_server_result.job_id            FaW5acYCDGHRqg782DpGXQ 
_model_server_result.datetime_utc      '2025-01-02 20:03:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lih 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":604}' 
#
_entry.id    5LIH 
#
_exptl.entry_id    5LIH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5LIH 
_cell.length_a            78.98 
_cell.length_b            84.23 
_cell.length_c            111.83 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LIH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,R,T 1 1 
B,D,L,M,N,O,P,Q,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 K N N 
? 5 N N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 164 A SER 411 1_555 A N TPO 165 A TPO 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C TPO 165 A TPO 412 1_555 A N PHE 166 A PHE 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C LEU 316 A LEU 563 1_555 A N TPO 317 A TPO 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C TPO 317 A TPO 564 1_555 A N PRO 318 A PRO 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale5 B C SER 164 B SER 411 1_555 B N TPO 165 B TPO 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 B C TPO 165 B TPO 412 1_555 B N PHE 166 B PHE 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 B C LEU 316 B LEU 563 1_555 B N TPO 317 B TPO 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 B C TPO 317 B TPO 564 1_555 B N PRO 318 B PRO 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
metalc ? metalc1 A NE2 HIS 107 A HIS 354 1_555 K MN MN . A MN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc2 A OD1 ASN 136 A ASN 383 1_555 G MN MN . A MN 603 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc3 A OD1 ASN 136 A ASN 383 1_555 G MN MN . A MN 603 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc4 A OD1 ASP 149 A ASP 396 1_555 H MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? 
metalc ? metalc5 A OD2 ASP 149 A ASP 396 1_555 H MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc6 E O1A ADP . A ADP 601 1_555 G MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? 
metalc ? metalc7 E O2B ADP . A ADP 601 1_555 H MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc8 G MN MN . A MN 603 1_555 I F1 AF3 . A AF3 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc9 H MN MN . A MN 604 1_555 I F3 AF3 . A AF3 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc10 B OD1 ASN 136 B ASN 383 1_555 N MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc11 B OD2 ASP 149 B ASP 396 1_555 N MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc12 B OD1 ASP 149 B ASP 396 1_555 O MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc13 B OD2 ASP 149 B ASP 396 1_555 O MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc14 L O1A ADP . B ADP 601 1_555 N MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc15 L O3B ADP . B ADP 601 1_555 O MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc16 N MN MN . B MN 603 1_555 P F1 AF3 . B AF3 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? 
metalc ? metalc17 O MN MN . B MN 604 1_555 P F3 AF3 . B AF3 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc18 O MN MN . B MN 604 1_555 S O HOH . B HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5LIH 
_atom_sites.fract_transf_matrix[1][1]    0.012661 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008942 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ADP A 1 601 2 ADP ADP . 
F 4 AF3 A 1 602 2 AF3 AF3 . 
G 5 MN A 1 603 1 MN MN . 
H 5 MN A 1 604 2 MN MN . 
I 4 AF3 A 1 605 3 AF3 AF3 . 
J 6 SCN A 1 606 2 SCN SCN . 
K 5 MN A 1 607 1 MN MN . 
L 3 ADP B 1 601 1 ADP ADP . 
M 4 AF3 B 1 602 1 AF3 AF3 . 
N 5 MN B 1 603 1 MN MN . 
O 5 MN B 1 604 2 MN MN . 
P 4 AF3 B 1 605 3 AF3 AF3 . 
Q 6 SCN B 1 606 3 SCN SCN . 
R 7 HOH A 1 701 1 HOH HOH . 
R 7 HOH A 2 702 20 HOH HOH . 
R 7 HOH A 3 703 16 HOH HOH . 
R 7 HOH A 4 704 14 HOH HOH . 
R 7 HOH A 5 705 24 HOH HOH . 
R 7 HOH A 6 706 19 HOH HOH . 
R 7 HOH A 7 707 18 HOH HOH . 
R 7 HOH A 8 708 15 HOH HOH . 
R 7 HOH A 9 709 6 HOH HOH . 
R 7 HOH A 10 710 22 HOH HOH . 
R 7 HOH A 11 711 35 HOH HOH . 
R 7 HOH A 12 712 5 HOH HOH . 
R 7 HOH A 13 713 2 HOH HOH . 
S 7 HOH B 1 701 21 HOH HOH . 
S 7 HOH B 2 702 9 HOH HOH . 
S 7 HOH B 3 703 10 HOH HOH . 
S 7 HOH B 4 704 26 HOH HOH . 
S 7 HOH B 5 705 31 HOH HOH . 
S 7 HOH B 6 706 12 HOH HOH . 
S 7 HOH B 7 707 34 HOH HOH . 
S 7 HOH B 8 708 11 HOH HOH . 
S 7 HOH B 9 709 23 HOH HOH . 
S 7 HOH B 10 710 25 HOH HOH . 
T 7 HOH F 1 101 3 HOH HOH . 
T 7 HOH F 2 102 33 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         O 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               41.522 
_atom_site.Cartn_y               25.805 
_atom_site.Cartn_z               92.002 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.7 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           604 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           857 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#