data_5LIK
#
_model_server_result.job_id            RDqo8khb0TIkSle-Ywp7xg 
_model_server_result.datetime_utc      '2024-11-08 09:04:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lik 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    5LIK 
#
_exptl.entry_id    5LIK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5LIK 
_cell.length_a            78.661 
_cell.length_b            78.661 
_cell.length_c            48.221 
_cell.Z_PDB               3 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LIK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 11 X ALA 11 1_555 A N MLZ 12 X MLZ 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C MLZ 12 X MLZ 12 1_555 A N MET 13 X MET 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C GLY 26 X GLY 26 1_555 A N MLY 27 X MLY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C MLY 27 X MLY 27 1_555 A N VAL 28 X VAL 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C VAL 32 X VAL 32 1_555 A N MLY 33 X MLY 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C MLY 33 X MLY 33 1_555 A N VAL 34 X VAL 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 A C GLU 61 X GLU 61 1_555 A N MLZ 62 X MLZ 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 A C MLZ 62 X MLZ 62 1_555 A N ILE 63 X ILE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 A C GLU 65 X GLU 65 1_555 A N MLY 66 X MLY 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale10 A C MLY 66 X MLY 66 1_555 A N ALA 67 X ALA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale11 A C GLU 94 X GLU 94 1_555 A N MLY 95 X MLY 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale12 A C MLY 95 X MLY 95 1_555 A N THR 96 X THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale13 A C LEU 97 X LEU 97 1_555 A N MLZ 98 X MLZ 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale14 A C MLZ 98 X MLZ 98 1_555 A N ASP 99 X ASP 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale15 A C VAL 154 X VAL 154 1_555 A N MLZ 155 X MLZ 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale16 A C MLZ 155 X MLZ 155 1_555 A N ALA 156 X ALA 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale17 A C LEU 176 X LEU 176 1_555 A N MLZ 177 X MLZ 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale18 A C MLZ 177 X MLZ 177 1_555 A N TYR 178 X TYR 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale19 A C SER 202 X SER 202 1_555 A N MLY 203 X MLY 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale20 A C MLY 203 X MLY 203 1_555 A N GLY 204 X GLY 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale21 A C PRO 232 X PRO 232 1_555 A N MLZ 233 X MLZ 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale22 A C MLZ 233 X MLZ 233 1_555 A N ILE 234 X ILE 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale23 A C HIS 241 X HIS 241 1_555 A N MLY 242 X MLY 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale24 A C MLY 242 X MLY 242 1_555 A N MLZ 243 X MLZ 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale25 A C MLZ 243 X MLZ 243 1_555 A N THR 244 X THR 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale26 A C PRO 262 X PRO 262 1_555 A N MLY 263 X MLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale27 A C MLY 263 X MLY 263 1_555 A N SER 264 X SER 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5LIK 
_atom_sites.fract_transf_matrix[1][1]    0.012713 
_atom_sites.fract_transf_matrix[1][2]    0.00734 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014679 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020738 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP X 1 401 350 NAP NAP . 
C 3 W8X X 1 402 900 W8X w8x . 
D 4 EDO X 1 403 1 EDO EDO . 
E 5 HOH X 1 501 81 HOH HOH . 
E 5 HOH X 2 502 70 HOH HOH . 
E 5 HOH X 3 503 95 HOH HOH . 
E 5 HOH X 4 504 134 HOH HOH . 
E 5 HOH X 5 505 42 HOH HOH . 
E 5 HOH X 6 506 39 HOH HOH . 
E 5 HOH X 7 507 126 HOH HOH . 
E 5 HOH X 8 508 55 HOH HOH . 
E 5 HOH X 9 509 66 HOH HOH . 
E 5 HOH X 10 510 74 HOH HOH . 
E 5 HOH X 11 511 64 HOH HOH . 
E 5 HOH X 12 512 45 HOH HOH . 
E 5 HOH X 13 513 89 HOH HOH . 
E 5 HOH X 14 514 18 HOH HOH . 
E 5 HOH X 15 515 21 HOH HOH . 
E 5 HOH X 16 516 43 HOH HOH . 
E 5 HOH X 17 517 12 HOH HOH . 
E 5 HOH X 18 518 136 HOH HOH . 
E 5 HOH X 19 519 52 HOH HOH . 
E 5 HOH X 20 520 26 HOH HOH . 
E 5 HOH X 21 521 54 HOH HOH . 
E 5 HOH X 22 522 16 HOH HOH . 
E 5 HOH X 23 523 137 HOH HOH . 
E 5 HOH X 24 524 8 HOH HOH . 
E 5 HOH X 25 525 11 HOH HOH . 
E 5 HOH X 26 526 1 HOH HOH . 
E 5 HOH X 27 527 105 HOH HOH . 
E 5 HOH X 28 528 5 HOH HOH . 
E 5 HOH X 29 529 61 HOH HOH . 
E 5 HOH X 30 530 25 HOH HOH . 
E 5 HOH X 31 531 44 HOH HOH . 
E 5 HOH X 32 532 59 HOH HOH . 
E 5 HOH X 33 533 87 HOH HOH . 
E 5 HOH X 34 534 37 HOH HOH . 
E 5 HOH X 35 535 132 HOH HOH . 
E 5 HOH X 36 536 117 HOH HOH . 
E 5 HOH X 37 537 60 HOH HOH . 
E 5 HOH X 38 538 122 HOH HOH . 
E 5 HOH X 39 539 3 HOH HOH . 
E 5 HOH X 40 540 4 HOH HOH . 
E 5 HOH X 41 541 115 HOH HOH . 
E 5 HOH X 42 542 71 HOH HOH . 
E 5 HOH X 43 543 7 HOH HOH . 
E 5 HOH X 44 544 106 HOH HOH . 
E 5 HOH X 45 545 80 HOH HOH . 
E 5 HOH X 46 546 48 HOH HOH . 
E 5 HOH X 47 547 72 HOH HOH . 
E 5 HOH X 48 548 130 HOH HOH . 
E 5 HOH X 49 549 69 HOH HOH . 
E 5 HOH X 50 550 68 HOH HOH . 
E 5 HOH X 51 551 2 HOH HOH . 
E 5 HOH X 52 552 19 HOH HOH . 
E 5 HOH X 53 553 121 HOH HOH . 
E 5 HOH X 54 554 15 HOH HOH . 
E 5 HOH X 55 555 50 HOH HOH . 
E 5 HOH X 56 556 29 HOH HOH . 
E 5 HOH X 57 557 103 HOH HOH . 
E 5 HOH X 58 558 23 HOH HOH . 
E 5 HOH X 59 559 109 HOH HOH . 
E 5 HOH X 60 560 27 HOH HOH . 
E 5 HOH X 61 561 102 HOH HOH . 
E 5 HOH X 62 562 13 HOH HOH . 
E 5 HOH X 63 563 56 HOH HOH . 
E 5 HOH X 64 564 124 HOH HOH . 
E 5 HOH X 65 565 6 HOH HOH . 
E 5 HOH X 66 566 114 HOH HOH . 
E 5 HOH X 67 567 123 HOH HOH . 
E 5 HOH X 68 568 62 HOH HOH . 
E 5 HOH X 69 569 9 HOH HOH . 
E 5 HOH X 70 570 135 HOH HOH . 
E 5 HOH X 71 571 138 HOH HOH . 
E 5 HOH X 72 572 53 HOH HOH . 
E 5 HOH X 73 573 24 HOH HOH . 
E 5 HOH X 74 574 14 HOH HOH . 
E 5 HOH X 75 575 83 HOH HOH . 
E 5 HOH X 76 576 104 HOH HOH . 
E 5 HOH X 77 577 129 HOH HOH . 
E 5 HOH X 78 578 131 HOH HOH . 
E 5 HOH X 79 579 97 HOH HOH . 
E 5 HOH X 80 580 34 HOH HOH . 
E 5 HOH X 81 581 94 HOH HOH . 
E 5 HOH X 82 582 22 HOH HOH . 
E 5 HOH X 83 583 91 HOH HOH . 
E 5 HOH X 84 584 118 HOH HOH . 
E 5 HOH X 85 585 49 HOH HOH . 
E 5 HOH X 86 586 88 HOH HOH . 
E 5 HOH X 87 587 99 HOH HOH . 
E 5 HOH X 88 588 75 HOH HOH . 
E 5 HOH X 89 589 96 HOH HOH . 
E 5 HOH X 90 590 120 HOH HOH . 
E 5 HOH X 91 591 78 HOH HOH . 
E 5 HOH X 92 592 133 HOH HOH . 
E 5 HOH X 93 593 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . A . D 4 9.414 8.309 1.415 0.52 30.46 ? C1 EDO 403 X 1 
HETATM 2 C C1 EDO . B . D 4 7.262 10.352 -0.861 0.48 31.01 ? C1 EDO 403 X 1 
HETATM 3 O O1 EDO . A . D 4 9.653 8.304 2.806 0.52 33.78 ? O1 EDO 403 X 1 
HETATM 4 O O1 EDO . B . D 4 6.014 9.661 -0.882 0.48 31.41 ? O1 EDO 403 X 1 
HETATM 5 C C2 EDO . A . D 4 9.417 9.732 0.894 0.52 36.75 ? C2 EDO 403 X 1 
HETATM 6 C C2 EDO . B . D 4 7.881 10.253 0.522 0.48 35.81 ? C2 EDO 403 X 1 
HETATM 7 O O2 EDO . A . D 4 8.164 10.071 0.306 0.52 37.02 ? O2 EDO 403 X 1 
HETATM 8 O O2 EDO . B . D 4 9.042 9.445 0.537 0.48 38.89 ? O2 EDO 403 X 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           8 
#