data_5LIL
#
_model_server_result.job_id            BGh5wZqpHv7FnU4aIaf-Cg 
_model_server_result.datetime_utc      '2024-12-22 01:57:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lil 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":701}' 
#
_entry.id    5LIL 
#
_exptl.entry_id    5LIL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.45 
_cell.angle_gamma         90 
_cell.entry_id            5LIL 
_cell.length_a            111.587 
_cell.length_b            82.621 
_cell.length_c            124.92 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LIL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 67 A SER 47 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc2 A OE1 GLN 112 A GLN 92 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? 
metalc ? metalc3 C O2G ATP . A ATP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc4 C O2B ATP . A ATP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc5 D MG MG . A MG 702 1_555 G O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc6 D MG MG . A MG 702 1_555 G O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc7 B OG SER 67 B SER 47 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc8 B OE1 GLN 112 B GLN 92 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc9 E O1G ATP . B ATP 701 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc10 E O1B ATP . B ATP 701 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc11 F MG MG . B MG 702 1_555 H O HOH . B HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc12 F MG MG . B MG 702 1_555 H O HOH . B HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     5LIL 
_atom_sites.fract_transf_matrix[1][1]    0.008962 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000697 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012103 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008029 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ATP A 1 701 1 ATP ATP . 
D 3 MG A 1 702 1 MG MG . 
E 2 ATP B 1 701 1 ATP ATP . 
F 3 MG B 1 702 1 MG MG . 
G 4 HOH A 1 801 4 HOH HOH . 
G 4 HOH A 2 802 3 HOH HOH . 
H 4 HOH B 1 801 2 HOH HOH . 
H 4 HOH B 2 802 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . E 2 12.157 52.933 59.036 1 57.91 ? PG ATP 701 B 1 
HETATM 2 O O1G ATP . . . E 2 12.585 51.866 58.059 1 60.64 ? O1G ATP 701 B 1 
HETATM 3 O O2G ATP . . . E 2 10.669 52.932 59.305 1 54.98 ? O2G ATP 701 B 1 
HETATM 4 O O3G ATP . . . E 2 12.709 54.309 58.76 1 54.77 ? O3G ATP 701 B 1 
HETATM 5 P PB ATP . . . E 2 13.46 51.088 60.786 1 52.96 ? PB ATP 701 B 1 
HETATM 6 O O1B ATP . . . E 2 13.338 50.167 59.597 1 58.91 ? O1B ATP 701 B 1 
HETATM 7 O O2B ATP . . . E 2 12.886 50.645 62.109 1 55.03 ? O2B ATP 701 B 1 
HETATM 8 O O3B ATP . . . E 2 12.829 52.534 60.45 1 54.85 ? O3B ATP 701 B 1 
HETATM 9 P PA ATP . . . E 2 16.182 50.359 60.997 1 60.86 ? PA ATP 701 B 1 
HETATM 10 O O1A ATP . . . E 2 16.586 50.169 59.552 1 62.22 ? O1A ATP 701 B 1 
HETATM 11 O O2A ATP . . . E 2 15.75 49.191 61.853 1 51.94 ? O2A ATP 701 B 1 
HETATM 12 O O3A ATP . . . E 2 15.006 51.459 61.038 1 60.33 ? O3A ATP 701 B 1 
HETATM 13 O O5' ATP . . . E 2 17.339 51.173 61.765 1 59.04 ? O5' ATP 701 B 1 
HETATM 14 C C5' ATP . . . E 2 17.699 50.819 63.094 1 57.63 ? C5' ATP 701 B 1 
HETATM 15 C C4' ATP . . . E 2 18.594 51.881 63.727 1 64.52 ? C4' ATP 701 B 1 
HETATM 16 O O4' ATP . . . E 2 19.953 51.433 63.677 1 65.34 ? O4' ATP 701 B 1 
HETATM 17 C C3' ATP . . . E 2 18.556 53.258 63.088 1 66.76 ? C3' ATP 701 B 1 
HETATM 18 O O3' ATP . . . E 2 18.516 54.212 64.155 1 62.82 ? O3' ATP 701 B 1 
HETATM 19 C C2' ATP . . . E 2 19.848 53.372 62.315 1 65.31 ? C2' ATP 701 B 1 
HETATM 20 O O2' ATP . . . E 2 20.358 54.703 62.338 1 64.52 ? O2' ATP 701 B 1 
HETATM 21 C C1' ATP . . . E 2 20.781 52.403 63.029 1 70.16 ? C1' ATP 701 B 1 
HETATM 22 N N9 ATP . . . E 2 21.686 51.705 62.089 1 70.91 ? N9 ATP 701 B 1 
HETATM 23 C C8 ATP . . . E 2 21.29 50.91 61.078 1 71.76 ? C8 ATP 701 B 1 
HETATM 24 N N7 ATP . . . E 2 22.365 50.418 60.412 1 74.92 ? N7 ATP 701 B 1 
HETATM 25 C C5 ATP . . . E 2 23.468 50.903 61.007 1 74.22 ? C5 ATP 701 B 1 
HETATM 26 C C6 ATP . . . E 2 24.926 50.782 60.802 1 81.02 ? C6 ATP 701 B 1 
HETATM 27 N N6 ATP . . . E 2 25.408 50.015 59.794 1 88.83 ? N6 ATP 701 B 1 
HETATM 28 N N1 ATP . . . E 2 25.74 51.456 61.647 1 81.32 ? N1 ATP 701 B 1 
HETATM 29 C C2 ATP . . . E 2 25.259 52.217 62.648 1 75.38 ? C2 ATP 701 B 1 
HETATM 30 N N3 ATP . . . E 2 23.943 52.369 62.887 1 70.15 ? N3 ATP 701 B 1 
HETATM 31 C C4 ATP . . . E 2 23.017 51.753 62.114 1 70.67 ? C4 ATP 701 B 1 
HETATM 32 H "H5'1" ATP . . . E 2 18.223 49.861 63.085 1 69.16 ? "H5'1" ATP 701 B 1 
HETATM 33 H "H5'2" ATP . . . E 2 16.795 50.7 63.695 1 69.16 ? "H5'2" ATP 701 B 1 
HETATM 34 H H4' ATP . . . E 2 18.293 51.99 64.778 1 77.43 ? H4' ATP 701 B 1 
HETATM 35 H H3' ATP . . . E 2 17.69 53.352 62.418 1 80.11 ? H3' ATP 701 B 1 
HETATM 36 H HO3' ATP . . . E 2 18.49 55.106 63.787 1 75.39 ? HO3' ATP 701 B 1 
HETATM 37 H H2' ATP . . . E 2 19.689 53.033 61.282 1 78.38 ? H2' ATP 701 B 1 
HETATM 38 H HO2' ATP . . . E 2 19.722 55.299 61.921 1 77.43 ? HO2' ATP 701 B 1 
HETATM 39 H H1' ATP . . . E 2 21.367 52.957 63.776 1 84.2 ? H1' ATP 701 B 1 
HETATM 40 H H8 ATP . . . E 2 20.259 50.693 60.83 1 86.11 ? H8 ATP 701 B 1 
HETATM 41 H HN61 ATP . . . E 2 26.405 49.931 59.655 1 106.6 ? HN61 ATP 701 B 1 
HETATM 42 H HN62 ATP . . . E 2 24.77 49.526 59.182 1 106.6 ? HN62 ATP 701 B 1 
HETATM 43 H H2 ATP . . . E 2 25.963 52.731 63.291 1 90.46 ? H2 ATP 701 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#