data_5LIP # _model_server_result.job_id RDEVcpo8AxvUkZeOsqRRLg _model_server_result.datetime_utc '2025-07-13 15:11:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 5LIP # _exptl.entry_id 5LIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 578.762 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTYL-PHOSPHINIC ACID 1,2-BIS-OCTYLCARBAMOYLOXY-ETHYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.23 _cell.angle_gamma 90 _cell.entry_id 5LIP _cell.length_a 88.73 _cell.length_b 46.42 _cell.length_c 83.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 190 A CYS 190 1_555 A SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? covale ? covale1 A OG SER 87 A SER 87 1_555 C P1 OCP . A OCP 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.574 ? metalc ? metalc1 A OD2 ASP 242 A ASP 242 1_555 B CA CA . A CA 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc2 A OD1 ASP 288 A ASP 288 1_555 B CA CA . A CA 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc3 A O VAL 296 A VAL 296 1_555 B CA CA . A CA 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? # _chem_comp.formula 'C29 H59 N2 O7 P' _chem_comp.formula_weight 578.762 _chem_comp.id OCP _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTYL-PHOSPHINIC ACID 1,2-BIS-OCTYLCARBAMOYLOXY-ETHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 OCP sing 237 n n P1 O2 OCP sing 238 n n P1 O4 OCP doub 239 n n P1 C4 OCP sing 240 n n O1 C1 OCP sing 241 n n O2 HO2 OCP sing 242 n n O5 C2 OCP sing 243 n n O5 C22 OCP sing 244 n n O6 C22 OCP doub 245 n n O3 C3 OCP sing 246 n n O3 C12 OCP sing 247 n n O7 C12 OCP doub 248 n n C1 C2 OCP sing 249 n n C1 H11 OCP sing 250 n n C1 H12 OCP sing 251 n n C2 C3 OCP sing 252 n n C2 H2 OCP sing 253 n n C3 H31 OCP sing 254 n n C3 H32 OCP sing 255 n n C4 C5 OCP sing 256 n n C4 H41 OCP sing 257 n n C4 H42 OCP sing 258 n n C5 C6 OCP sing 259 n n C5 H51 OCP sing 260 n n C5 H52 OCP sing 261 n n C6 C7 OCP sing 262 n n C6 H61 OCP sing 263 n n C6 H62 OCP sing 264 n n C7 C8 OCP sing 265 n n C7 H71 OCP sing 266 n n C7 H72 OCP sing 267 n n C8 C9 OCP sing 268 n n C8 H81 OCP sing 269 n n C8 H82 OCP sing 270 n n C9 C10 OCP sing 271 n n C9 H91 OCP sing 272 n n C9 H92 OCP sing 273 n n C10 C11 OCP sing 274 n n C10 H101 OCP sing 275 n n C10 H102 OCP sing 276 n n C11 H111 OCP sing 277 n n C11 H112 OCP sing 278 n n C11 H113 OCP sing 279 n n C12 N1 OCP sing 280 n n N1 C13 OCP sing 281 n n N1 HN1 OCP sing 282 n n C13 C14 OCP sing 283 n n C13 H131 OCP sing 284 n n C13 H132 OCP sing 285 n n C14 C15 OCP sing 286 n n C14 H141 OCP sing 287 n n C14 H142 OCP sing 288 n n C15 C16 OCP sing 289 n n C15 H151 OCP sing 290 n n C15 H152 OCP sing 291 n n C16 C17 OCP sing 292 n n C16 H161 OCP sing 293 n n C16 H162 OCP sing 294 n n C17 C18 OCP sing 295 n n C17 H171 OCP sing 296 n n C17 H172 OCP sing 297 n n C18 C19 OCP sing 298 n n C18 H181 OCP sing 299 n n C18 H182 OCP sing 300 n n C19 C20 OCP sing 301 n n C19 H191 OCP sing 302 n n C19 H192 OCP sing 303 n n C20 H201 OCP sing 304 n n C20 H202 OCP sing 305 n n C20 H203 OCP sing 306 n n C22 N2 OCP sing 307 n n N2 C23 OCP sing 308 n n N2 HN2 OCP sing 309 n n C23 C24 OCP sing 310 n n C23 H231 OCP sing 311 n n C23 H232 OCP sing 312 n n C24 C25 OCP sing 313 n n C24 H241 OCP sing 314 n n C24 H242 OCP sing 315 n n C25 C26 OCP sing 316 n n C25 H251 OCP sing 317 n n C25 H252 OCP sing 318 n n C26 C27 OCP sing 319 n n C26 H261 OCP sing 320 n n C26 H262 OCP sing 321 n n C27 C28 OCP sing 322 n n C27 H271 OCP sing 323 n n C27 H272 OCP sing 324 n n C28 C29 OCP sing 325 n n C28 H281 OCP sing 326 n n C28 H282 OCP sing 327 n n C29 C30 OCP sing 328 n n C29 H291 OCP sing 329 n n C29 H292 OCP sing 330 n n C30 H301 OCP sing 331 n n C30 H302 OCP sing 332 n n C30 H303 OCP sing 333 n n # _atom_sites.entry_id 5LIP _atom_sites.fract_transf_matrix[1][1] 0.01127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006834 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 321 321 CA CA . C 3 OCP A 1 400 400 OCP OCP . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 OCP . . . C 3 12.548 2.113 14.468 1 14.59 ? P1 OCP 400 A 1 HETATM 2 O O1 OCP . . . C 3 12.347 1.04 13.338 1 14.54 ? O1 OCP 400 A 1 HETATM 3 O O4 OCP . . . C 3 11.209 2.555 14.88 1 9.97 ? O4 OCP 400 A 1 HETATM 4 O O5 OCP . . . C 3 11.21 -1.165 11.277 1 27.13 ? O5 OCP 400 A 1 HETATM 5 O O6 OCP . . . C 3 9.452 -0.621 9.773 1 30.98 ? O6 OCP 400 A 1 HETATM 6 O O3 OCP . . . C 3 12.416 0.761 8.86 1 29.6 ? O3 OCP 400 A 1 HETATM 7 O O7 OCP . . . C 3 14.657 1.811 8.334 1 30.59 ? O7 OCP 400 A 1 HETATM 8 C C1 OCP . . . C 3 11.122 0.97 12.502 1 20.18 ? C1 OCP 400 A 1 HETATM 9 C C2 OCP . . . C 3 11.24 0.398 11.098 1 24.93 ? C2 OCP 400 A 1 HETATM 10 C C3 OCP . . . C 3 12.569 0.757 10.316 1 27.12 ? C3 OCP 400 A 1 HETATM 11 C C4 OCP . . . C 3 13.206 3.669 14.365 1 16.1 ? C4 OCP 400 A 1 HETATM 12 C C5 OCP . . . C 3 14.677 3.317 13.984 1 19.49 ? C5 OCP 400 A 1 HETATM 13 C C6 OCP . . . C 3 15.375 4.773 13.672 1 22.59 ? C6 OCP 400 A 1 HETATM 14 C C7 OCP . . . C 3 15.224 5.084 12.17 1 25.41 ? C7 OCP 400 A 1 HETATM 15 C C8 OCP . . . C 3 14.931 6.402 11.495 1 27.86 ? C8 OCP 400 A 1 HETATM 16 C C9 OCP . . . C 3 14.842 6.328 9.897 1 30.75 ? C9 OCP 400 A 1 HETATM 17 C C10 OCP . . . C 3 14.52 7.869 9.728 1 33.49 ? C10 OCP 400 A 1 HETATM 18 C C11 OCP . . . C 3 13.014 8.258 9.026 1 37.58 ? C11 OCP 400 A 1 HETATM 19 C C12 OCP . . . C 3 13.56 1.087 8.158 1 30.63 ? C12 OCP 400 A 1 HETATM 20 N N1 OCP . . . C 3 13.478 0.369 6.747 1 30.62 ? N1 OCP 400 A 1 HETATM 21 C C13 OCP . . . C 3 14.86 0.634 5.864 1 28.84 ? C13 OCP 400 A 1 HETATM 22 C C14 OCP . . . C 3 14.462 1.924 5.085 1 30.77 ? C14 OCP 400 A 1 HETATM 23 C C15 OCP . . . C 3 15.525 1.812 4.1 1 30.73 ? C15 OCP 400 A 1 HETATM 24 C C16 OCP . . . C 3 16.189 2.295 2.985 1 32.07 ? C16 OCP 400 A 1 HETATM 25 C C17 OCP . . . C 3 17.573 2.626 2.496 1 33.12 ? C17 OCP 400 A 1 HETATM 26 C C18 OCP . . . C 3 17.675 2.758 0.982 1 33.47 ? C18 OCP 400 A 1 HETATM 27 C C19 OCP . . . C 3 19.17 3.059 1.083 1 34.07 ? C19 OCP 400 A 1 HETATM 28 C C20 OCP . . . C 3 19.847 3.286 -0.31 1 35.43 ? C20 OCP 400 A 1 HETATM 29 C C22 OCP . . . C 3 10.292 -1.443 10.223 1 29.02 ? C22 OCP 400 A 1 HETATM 30 N N2 OCP . . . C 3 9.808 -2.713 9.823 1 29.06 ? N2 OCP 400 A 1 HETATM 31 C C23 OCP . . . C 3 8.764 -3.454 8.573 1 28.94 ? C23 OCP 400 A 1 HETATM 32 C C24 OCP . . . C 3 8.983 -3.938 7.21 1 30.07 ? C24 OCP 400 A 1 HETATM 33 C C25 OCP . . . C 3 7.846 -3.262 6.701 1 32.15 ? C25 OCP 400 A 1 HETATM 34 C C26 OCP . . . C 3 7.734 -3.54 5.16 1 32.78 ? C26 OCP 400 A 1 HETATM 35 C C27 OCP . . . C 3 6.443 -2.746 4.8 1 33.75 ? C27 OCP 400 A 1 HETATM 36 C C28 OCP . . . C 3 6.096 -2.856 3.332 1 35.27 ? C28 OCP 400 A 1 HETATM 37 C C29 OCP . . . C 3 4.79 -2.01 3.212 1 35.78 ? C29 OCP 400 A 1 HETATM 38 C C30 OCP . . . C 3 4.428 -2.08 1.552 1 32.27 ? C30 OCP 400 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 426 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 38 #