data_5LIU # _model_server_result.job_id 2bQcp_kpB6louBqustQ0cw _model_server_result.datetime_utc '2024-11-23 11:58:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5liu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5LIU # _exptl.entry_id 5LIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LIU _cell.length_a 79.393 _cell.length_b 79.393 _cell.length_c 50.093 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 11 X ALA 11 1_555 A N MLZ 12 X MLZ 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MLZ 12 X MLZ 12 1_555 A N MET 13 X MET 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C GLY 26 X GLY 26 1_555 A N MLY 27 X MLY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MLY 27 X MLY 27 1_555 A N VAL 28 X VAL 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C VAL 32 X VAL 32 1_555 A N MLY 33 X MLY 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C MLY 33 X MLY 33 1_555 A N VAL 34 X VAL 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C GLU 61 X GLU 61 1_555 A N MLZ 62 X MLZ 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MLZ 62 X MLZ 62 1_555 A N ILE 63 X ILE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C GLU 65 X GLU 65 1_555 A N MLY 66 X MLY 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 A C MLY 66 X MLY 66 1_555 A N ALA 67 X ALA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 A C GLU 94 X GLU 94 1_555 A N MLY 95 X MLY 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C MLY 95 X MLY 95 1_555 A N THR 96 X THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C LEU 97 X LEU 97 1_555 A N MLZ 98 X MLZ 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale14 A C MLZ 98 X MLZ 98 1_555 A N ASP 99 X ASP 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 A C VAL 154 X VAL 154 1_555 A N MLZ 155 X MLZ 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 A C MLZ 155 X MLZ 155 1_555 A N ALA 156 X ALA 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale17 A C LEU 176 X LEU 176 1_555 A N MLZ 177 X MLZ 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 A C MLZ 177 X MLZ 177 1_555 A N TYR 178 X TYR 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale19 A C SER 202 X SER 202 1_555 A N MLY 203 X MLY 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale20 A C MLY 203 X MLY 203 1_555 A N GLY 204 X GLY 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale21 A C PRO 232 X PRO 232 1_555 A N MLZ 233 X MLZ 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 A C MLZ 233 X MLZ 233 1_555 A N ILE 234 X ILE 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 A C HIS 241 X HIS 241 1_555 A N MLY 242 X MLY 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale24 A C MLY 242 X MLY 242 1_555 A N MLZ 243 X MLZ 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale25 A C MLZ 243 X MLZ 243 1_555 A N THR 244 X THR 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale26 A C PRO 262 X PRO 262 1_555 A N MLY 263 X MLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale27 A C MLY 263 X MLY 263 1_555 A N SER 264 X SER 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 120 n n C1 C2 EDO sing 121 n n C1 H11 EDO sing 122 n n C1 H12 EDO sing 123 n n O1 HO1 EDO sing 124 n n C2 O2 EDO sing 125 n n C2 H21 EDO sing 126 n n C2 H22 EDO sing 127 n n O2 HO2 EDO sing 128 n n # _atom_sites.entry_id 5LIU _atom_sites.fract_transf_matrix[1][1] 0.012596 _atom_sites.fract_transf_matrix[1][2] 0.007272 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP X 1 401 350 NAP NAP . C 3 388 X 1 402 320 388 3X8 . D 4 EDO X 1 403 1 EDO EDO . E 5 HOH X 1 501 130 HOH HOH . E 5 HOH X 2 502 100 HOH HOH . E 5 HOH X 3 503 9 HOH HOH . E 5 HOH X 4 504 14 HOH HOH . E 5 HOH X 5 505 152 HOH HOH . E 5 HOH X 6 506 101 HOH HOH . E 5 HOH X 7 507 117 HOH HOH . E 5 HOH X 8 508 86 HOH HOH . E 5 HOH X 9 509 175 HOH HOH . E 5 HOH X 10 510 109 HOH HOH . E 5 HOH X 11 511 80 HOH HOH . E 5 HOH X 12 512 48 HOH HOH . E 5 HOH X 13 513 71 HOH HOH . E 5 HOH X 14 514 78 HOH HOH . E 5 HOH X 15 515 34 HOH HOH . E 5 HOH X 16 516 52 HOH HOH . E 5 HOH X 17 517 79 HOH HOH . E 5 HOH X 18 518 104 HOH HOH . E 5 HOH X 19 519 11 HOH HOH . E 5 HOH X 20 520 75 HOH HOH . E 5 HOH X 21 521 123 HOH HOH . E 5 HOH X 22 522 54 HOH HOH . E 5 HOH X 23 523 13 HOH HOH . E 5 HOH X 24 524 98 HOH HOH . E 5 HOH X 25 525 29 HOH HOH . E 5 HOH X 26 526 95 HOH HOH . E 5 HOH X 27 527 176 HOH HOH . E 5 HOH X 28 528 93 HOH HOH . E 5 HOH X 29 529 15 HOH HOH . E 5 HOH X 30 530 92 HOH HOH . E 5 HOH X 31 531 76 HOH HOH . E 5 HOH X 32 532 2 HOH HOH . E 5 HOH X 33 533 137 HOH HOH . E 5 HOH X 34 534 85 HOH HOH . E 5 HOH X 35 535 6 HOH HOH . E 5 HOH X 36 536 139 HOH HOH . E 5 HOH X 37 537 41 HOH HOH . E 5 HOH X 38 538 126 HOH HOH . E 5 HOH X 39 539 181 HOH HOH . E 5 HOH X 40 540 119 HOH HOH . E 5 HOH X 41 541 43 HOH HOH . E 5 HOH X 42 542 25 HOH HOH . E 5 HOH X 43 543 64 HOH HOH . E 5 HOH X 44 544 62 HOH HOH . E 5 HOH X 45 545 99 HOH HOH . E 5 HOH X 46 546 4 HOH HOH . E 5 HOH X 47 547 37 HOH HOH . E 5 HOH X 48 548 124 HOH HOH . E 5 HOH X 49 549 144 HOH HOH . E 5 HOH X 50 550 128 HOH HOH . E 5 HOH X 51 551 7 HOH HOH . E 5 HOH X 52 552 120 HOH HOH . E 5 HOH X 53 553 1 HOH HOH . E 5 HOH X 54 554 18 HOH HOH . E 5 HOH X 55 555 107 HOH HOH . E 5 HOH X 56 556 141 HOH HOH . E 5 HOH X 57 557 27 HOH HOH . E 5 HOH X 58 558 110 HOH HOH . E 5 HOH X 59 559 149 HOH HOH . E 5 HOH X 60 560 88 HOH HOH . E 5 HOH X 61 561 46 HOH HOH . E 5 HOH X 62 562 82 HOH HOH . E 5 HOH X 63 563 87 HOH HOH . E 5 HOH X 64 564 94 HOH HOH . E 5 HOH X 65 565 65 HOH HOH . E 5 HOH X 66 566 111 HOH HOH . E 5 HOH X 67 567 147 HOH HOH . E 5 HOH X 68 568 91 HOH HOH . E 5 HOH X 69 569 180 HOH HOH . E 5 HOH X 70 570 2 HOH HOH . E 5 HOH X 71 571 3 HOH HOH . E 5 HOH X 72 572 134 HOH HOH . E 5 HOH X 73 573 57 HOH HOH . E 5 HOH X 74 574 33 HOH HOH . E 5 HOH X 75 575 55 HOH HOH . E 5 HOH X 76 576 26 HOH HOH . E 5 HOH X 77 577 89 HOH HOH . E 5 HOH X 78 578 12 HOH HOH . E 5 HOH X 79 579 11 HOH HOH . E 5 HOH X 80 580 188 HOH HOH . E 5 HOH X 81 581 81 HOH HOH . E 5 HOH X 82 582 21 HOH HOH . E 5 HOH X 83 583 53 HOH HOH . E 5 HOH X 84 584 69 HOH HOH . E 5 HOH X 85 585 60 HOH HOH . E 5 HOH X 86 586 16 HOH HOH . E 5 HOH X 87 587 8 HOH HOH . E 5 HOH X 88 588 106 HOH HOH . E 5 HOH X 89 589 28 HOH HOH . E 5 HOH X 90 590 72 HOH HOH . E 5 HOH X 91 591 59 HOH HOH . E 5 HOH X 92 592 122 HOH HOH . E 5 HOH X 93 593 178 HOH HOH . E 5 HOH X 94 594 12 HOH HOH . E 5 HOH X 95 595 56 HOH HOH . E 5 HOH X 96 596 77 HOH HOH . E 5 HOH X 97 597 40 HOH HOH . E 5 HOH X 98 598 7 HOH HOH . E 5 HOH X 99 599 186 HOH HOH . E 5 HOH X 100 600 24 HOH HOH . E 5 HOH X 101 601 70 HOH HOH . E 5 HOH X 102 602 105 HOH HOH . E 5 HOH X 103 603 116 HOH HOH . E 5 HOH X 104 604 35 HOH HOH . E 5 HOH X 105 605 23 HOH HOH . E 5 HOH X 106 606 129 HOH HOH . E 5 HOH X 107 607 20 HOH HOH . E 5 HOH X 108 608 47 HOH HOH . E 5 HOH X 109 609 5 HOH HOH . E 5 HOH X 110 610 148 HOH HOH . E 5 HOH X 111 611 66 HOH HOH . E 5 HOH X 112 612 113 HOH HOH . E 5 HOH X 113 613 1 HOH HOH . E 5 HOH X 114 614 30 HOH HOH . E 5 HOH X 115 615 22 HOH HOH . E 5 HOH X 116 616 5 HOH HOH . E 5 HOH X 117 617 108 HOH HOH . E 5 HOH X 118 618 125 HOH HOH . E 5 HOH X 119 619 10 HOH HOH . E 5 HOH X 120 620 184 HOH HOH . E 5 HOH X 121 621 9 HOH HOH . E 5 HOH X 122 622 3 HOH HOH . E 5 HOH X 123 623 187 HOH HOH . E 5 HOH X 124 624 74 HOH HOH . E 5 HOH X 125 625 83 HOH HOH . E 5 HOH X 126 626 17 HOH HOH . E 5 HOH X 127 627 4 HOH HOH . E 5 HOH X 128 628 84 HOH HOH . E 5 HOH X 129 629 160 HOH HOH . E 5 HOH X 130 630 45 HOH HOH . E 5 HOH X 131 631 172 HOH HOH . E 5 HOH X 132 632 63 HOH HOH . E 5 HOH X 133 633 142 HOH HOH . E 5 HOH X 134 634 159 HOH HOH . E 5 HOH X 135 635 169 HOH HOH . E 5 HOH X 136 636 39 HOH HOH . E 5 HOH X 137 637 103 HOH HOH . E 5 HOH X 138 638 190 HOH HOH . E 5 HOH X 139 639 167 HOH HOH . E 5 HOH X 140 640 38 HOH HOH . E 5 HOH X 141 641 51 HOH HOH . E 5 HOH X 142 642 73 HOH HOH . E 5 HOH X 143 643 115 HOH HOH . E 5 HOH X 144 644 118 HOH HOH . E 5 HOH X 145 645 155 HOH HOH . E 5 HOH X 146 646 97 HOH HOH . E 5 HOH X 147 647 146 HOH HOH . E 5 HOH X 148 648 136 HOH HOH . E 5 HOH X 149 649 121 HOH HOH . E 5 HOH X 150 650 143 HOH HOH . E 5 HOH X 151 651 49 HOH HOH . E 5 HOH X 152 652 164 HOH HOH . E 5 HOH X 153 653 1 HOH HOH . E 5 HOH X 154 654 156 HOH HOH . E 5 HOH X 155 655 151 HOH HOH . E 5 HOH X 156 656 168 HOH HOH . E 5 HOH X 157 657 162 HOH HOH . E 5 HOH X 158 658 8 HOH HOH . E 5 HOH X 159 659 36 HOH HOH . E 5 HOH X 160 660 90 HOH HOH . E 5 HOH X 161 661 153 HOH HOH . E 5 HOH X 162 662 170 HOH HOH . E 5 HOH X 163 663 132 HOH HOH . E 5 HOH X 164 664 154 HOH HOH . E 5 HOH X 165 665 131 HOH HOH . E 5 HOH X 166 666 165 HOH HOH . E 5 HOH X 167 667 179 HOH HOH . E 5 HOH X 168 668 189 HOH HOH . E 5 HOH X 169 669 6 HOH HOH . E 5 HOH X 170 670 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . A . D 4 -6.955 11.323 0.254 0.54 16.71 ? C1 EDO 403 X 1 HETATM 2 C C1 EDO . B . D 4 -10.234 10.202 -2.477 0.46 16 ? C1 EDO 403 X 1 HETATM 3 O O1 EDO . A . D 4 -6.365 10.171 0.865 0.54 19.48 ? O1 EDO 403 X 1 HETATM 4 O O1 EDO . B . D 4 -9.864 10.67 -1.176 0.46 18.86 ? O1 EDO 403 X 1 HETATM 5 C C2 EDO . A . D 4 -8.473 11.234 0.35 0.54 17.47 ? C2 EDO 403 X 1 HETATM 6 C C2 EDO . B . D 4 -9.842 8.737 -2.594 0.46 16.65 ? C2 EDO 403 X 1 HETATM 7 O O2 EDO . A . D 4 -8.958 10.219 -0.533 0.54 20.07 ? O2 EDO 403 X 1 HETATM 8 O O2 EDO . B . D 4 -10.242 8.225 -3.871 0.46 20.39 ? O2 EDO 403 X 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #