data_5LIW
#
_model_server_result.job_id            '_aRwdbZOeF4_q5MzauOEEA' 
_model_server_result.datetime_utc      '2024-11-13 04:12:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5liw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    5LIW 
#
_exptl.entry_id    5LIW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5LIW 
_cell.length_a            79.585 
_cell.length_b            79.585 
_cell.length_c            49.854 
_cell.Z_PDB               3 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LIW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 32 X VAL 32 1_555 A N MLY 33 X MLY 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale2 A C MLY 33 X MLY 33 1_555 A N VAL 34 X VAL 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale3 A C GLU 61 X GLU 61 1_555 A N MLZ 62 X MLZ 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.217 ? 
covale ? covale4 A C MLZ 62 X MLZ 62 1_555 A N ILE 63 X ILE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.215 ? 
covale ? covale5 A C GLU 94 X GLU 94 1_555 A N MLY 95 X MLY 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? 
covale ? covale6 A C MLY 95 X MLY 95 1_555 A N THR 96 X THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale7 A C VAL 154 X VAL 154 1_555 A N MLZ 155 X MLZ 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? 
covale ? covale8 A C MLZ 155 X MLZ 155 1_555 A N ALA 156 X ALA 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? 
covale ? covale9 A C LEU 176 X LEU 176 1_555 A N MLZ 177 X MLZ 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? 
covale ? covale10 A C MLZ 177 X MLZ 177 1_555 A N TYR 178 X TYR 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale11 A C SER 202 X SER 202 1_555 A N MLY 203 X MLY 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale12 A C MLY 203 X MLY 203 1_555 A N GLY 204 X GLY 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale13 A C HIS 241 X HIS 241 1_555 A N MLY 242 X MLY 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.272 ? 
covale ? covale14 A C MLY 242 X MLY 242 1_555 A N MLZ 243 X MLZ 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? 
covale ? covale15 A C MLZ 243 X MLZ 243 1_555 A N THR 244 X THR 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale16 A C PRO 262 X PRO 262 1_555 A N MLY 263 X MLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale17 A C MLY 263 X MLY 263 1_555 A N SER 264 X SER 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 120 n n 
C1 C2 EDO sing 121 n n 
C1 H11 EDO sing 122 n n 
C1 H12 EDO sing 123 n n 
O1 HO1 EDO sing 124 n n 
C2 O2 EDO sing 125 n n 
C2 H21 EDO sing 126 n n 
C2 H22 EDO sing 127 n n 
O2 HO2 EDO sing 128 n n 
#
_atom_sites.entry_id                     5LIW 
_atom_sites.fract_transf_matrix[1][1]    0.012565 
_atom_sites.fract_transf_matrix[1][2]    0.007255 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014509 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020059 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP X 1 401 350 NAP NAP . 
C 3 1WX X 1 402 900 1WX 3K9 . 
D 3 1WX X 1 403 901 1WX 3K9 . 
E 4 EDO X 1 404 1 EDO EDO . 
F 5 HOH X 1 501 96 HOH HOH . 
F 5 HOH X 2 502 131 HOH HOH . 
F 5 HOH X 3 503 45 HOH HOH . 
F 5 HOH X 4 504 81 HOH HOH . 
F 5 HOH X 5 505 121 HOH HOH . 
F 5 HOH X 6 506 73 HOH HOH . 
F 5 HOH X 7 507 125 HOH HOH . 
F 5 HOH X 8 508 126 HOH HOH . 
F 5 HOH X 9 509 42 HOH HOH . 
F 5 HOH X 10 510 14 HOH HOH . 
F 5 HOH X 11 511 148 HOH HOH . 
F 5 HOH X 12 512 71 HOH HOH . 
F 5 HOH X 13 513 20 HOH HOH . 
F 5 HOH X 14 514 166 HOH HOH . 
F 5 HOH X 15 515 25 HOH HOH . 
F 5 HOH X 16 516 118 HOH HOH . 
F 5 HOH X 17 517 91 HOH HOH . 
F 5 HOH X 18 518 106 HOH HOH . 
F 5 HOH X 19 519 86 HOH HOH . 
F 5 HOH X 20 520 182 HOH HOH . 
F 5 HOH X 21 521 117 HOH HOH . 
F 5 HOH X 22 522 103 HOH HOH . 
F 5 HOH X 23 523 134 HOH HOH . 
F 5 HOH X 24 524 151 HOH HOH . 
F 5 HOH X 25 525 124 HOH HOH . 
F 5 HOH X 26 526 44 HOH HOH . 
F 5 HOH X 27 527 99 HOH HOH . 
F 5 HOH X 28 528 95 HOH HOH . 
F 5 HOH X 29 529 9 HOH HOH . 
F 5 HOH X 30 530 79 HOH HOH . 
F 5 HOH X 31 531 40 HOH HOH . 
F 5 HOH X 32 532 27 HOH HOH . 
F 5 HOH X 33 533 67 HOH HOH . 
F 5 HOH X 34 534 136 HOH HOH . 
F 5 HOH X 35 535 186 HOH HOH . 
F 5 HOH X 36 536 74 HOH HOH . 
F 5 HOH X 37 537 50 HOH HOH . 
F 5 HOH X 38 538 175 HOH HOH . 
F 5 HOH X 39 539 76 HOH HOH . 
F 5 HOH X 40 540 132 HOH HOH . 
F 5 HOH X 41 541 12 HOH HOH . 
F 5 HOH X 42 542 68 HOH HOH . 
F 5 HOH X 43 543 119 HOH HOH . 
F 5 HOH X 44 544 19 HOH HOH . 
F 5 HOH X 45 545 183 HOH HOH . 
F 5 HOH X 46 546 46 HOH HOH . 
F 5 HOH X 47 547 28 HOH HOH . 
F 5 HOH X 48 548 36 HOH HOH . 
F 5 HOH X 49 549 65 HOH HOH . 
F 5 HOH X 50 550 53 HOH HOH . 
F 5 HOH X 51 551 92 HOH HOH . 
F 5 HOH X 52 552 188 HOH HOH . 
F 5 HOH X 53 553 62 HOH HOH . 
F 5 HOH X 54 554 23 HOH HOH . 
F 5 HOH X 55 555 61 HOH HOH . 
F 5 HOH X 56 556 5 HOH HOH . 
F 5 HOH X 57 557 174 HOH HOH . 
F 5 HOH X 58 558 32 HOH HOH . 
F 5 HOH X 59 559 88 HOH HOH . 
F 5 HOH X 60 560 39 HOH HOH . 
F 5 HOH X 61 561 8 HOH HOH . 
F 5 HOH X 62 562 66 HOH HOH . 
F 5 HOH X 63 563 120 HOH HOH . 
F 5 HOH X 64 564 85 HOH HOH . 
F 5 HOH X 65 565 82 HOH HOH . 
F 5 HOH X 66 566 6 HOH HOH . 
F 5 HOH X 67 567 114 HOH HOH . 
F 5 HOH X 68 568 16 HOH HOH . 
F 5 HOH X 69 569 30 HOH HOH . 
F 5 HOH X 70 570 41 HOH HOH . 
F 5 HOH X 71 571 52 HOH HOH . 
F 5 HOH X 72 572 72 HOH HOH . 
F 5 HOH X 73 573 130 HOH HOH . 
F 5 HOH X 74 574 109 HOH HOH . 
F 5 HOH X 75 575 57 HOH HOH . 
F 5 HOH X 76 576 29 HOH HOH . 
F 5 HOH X 77 577 94 HOH HOH . 
F 5 HOH X 78 578 38 HOH HOH . 
F 5 HOH X 79 579 58 HOH HOH . 
F 5 HOH X 80 580 18 HOH HOH . 
F 5 HOH X 81 581 54 HOH HOH . 
F 5 HOH X 82 582 104 HOH HOH . 
F 5 HOH X 83 583 90 HOH HOH . 
F 5 HOH X 84 584 178 HOH HOH . 
F 5 HOH X 85 585 15 HOH HOH . 
F 5 HOH X 86 586 78 HOH HOH . 
F 5 HOH X 87 587 31 HOH HOH . 
F 5 HOH X 88 588 80 HOH HOH . 
F 5 HOH X 89 589 35 HOH HOH . 
F 5 HOH X 90 590 70 HOH HOH . 
F 5 HOH X 91 591 113 HOH HOH . 
F 5 HOH X 92 592 75 HOH HOH . 
F 5 HOH X 93 593 133 HOH HOH . 
F 5 HOH X 94 594 185 HOH HOH . 
F 5 HOH X 95 595 160 HOH HOH . 
F 5 HOH X 96 596 128 HOH HOH . 
F 5 HOH X 97 597 83 HOH HOH . 
F 5 HOH X 98 598 47 HOH HOH . 
F 5 HOH X 99 599 87 HOH HOH . 
F 5 HOH X 100 600 137 HOH HOH . 
F 5 HOH X 101 601 138 HOH HOH . 
F 5 HOH X 102 602 7 HOH HOH . 
F 5 HOH X 103 603 116 HOH HOH . 
F 5 HOH X 104 604 22 HOH HOH . 
F 5 HOH X 105 605 21 HOH HOH . 
F 5 HOH X 106 606 122 HOH HOH . 
F 5 HOH X 107 607 34 HOH HOH . 
F 5 HOH X 108 608 97 HOH HOH . 
F 5 HOH X 109 609 63 HOH HOH . 
F 5 HOH X 110 610 191 HOH HOH . 
F 5 HOH X 111 611 155 HOH HOH . 
F 5 HOH X 112 612 156 HOH HOH . 
F 5 HOH X 113 613 69 HOH HOH . 
F 5 HOH X 114 614 127 HOH HOH . 
F 5 HOH X 115 615 177 HOH HOH . 
F 5 HOH X 116 616 33 HOH HOH . 
F 5 HOH X 117 617 13 HOH HOH . 
F 5 HOH X 118 618 37 HOH HOH . 
F 5 HOH X 119 619 105 HOH HOH . 
F 5 HOH X 120 620 24 HOH HOH . 
F 5 HOH X 121 621 2 HOH HOH . 
F 5 HOH X 122 622 98 HOH HOH . 
F 5 HOH X 123 623 56 HOH HOH . 
F 5 HOH X 124 624 115 HOH HOH . 
F 5 HOH X 125 625 108 HOH HOH . 
F 5 HOH X 126 626 84 HOH HOH . 
F 5 HOH X 127 627 100 HOH HOH . 
F 5 HOH X 128 628 143 HOH HOH . 
F 5 HOH X 129 629 1 HOH HOH . 
F 5 HOH X 130 630 11 HOH HOH . 
F 5 HOH X 131 631 89 HOH HOH . 
F 5 HOH X 132 632 51 HOH HOH . 
F 5 HOH X 133 633 123 HOH HOH . 
F 5 HOH X 134 634 192 HOH HOH . 
F 5 HOH X 135 635 59 HOH HOH . 
F 5 HOH X 136 636 145 HOH HOH . 
F 5 HOH X 137 637 101 HOH HOH . 
F 5 HOH X 138 638 4 HOH HOH . 
F 5 HOH X 139 639 144 HOH HOH . 
F 5 HOH X 140 640 164 HOH HOH . 
F 5 HOH X 141 641 154 HOH HOH . 
F 5 HOH X 142 642 184 HOH HOH . 
F 5 HOH X 143 643 139 HOH HOH . 
F 5 HOH X 144 644 170 HOH HOH . 
F 5 HOH X 145 645 93 HOH HOH . 
F 5 HOH X 146 646 168 HOH HOH . 
F 5 HOH X 147 647 147 HOH HOH . 
F 5 HOH X 148 648 150 HOH HOH . 
F 5 HOH X 149 649 48 HOH HOH . 
F 5 HOH X 150 650 102 HOH HOH . 
F 5 HOH X 151 651 140 HOH HOH . 
F 5 HOH X 152 652 173 HOH HOH . 
F 5 HOH X 153 653 111 HOH HOH . 
F 5 HOH X 154 654 172 HOH HOH . 
F 5 HOH X 155 655 17 HOH HOH . 
F 5 HOH X 156 656 169 HOH HOH . 
F 5 HOH X 157 657 162 HOH HOH . 
F 5 HOH X 158 658 146 HOH HOH . 
F 5 HOH X 159 659 158 HOH HOH . 
F 5 HOH X 160 660 181 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . A . E 4 -25.895 19.614 0.852 0.56 37.32 ? C1 EDO 404 X 1 
HETATM 2 C C1 EDO . C . E 4 -26.081 20.893 0.977 0.44 36.16 ? C1 EDO 404 X 1 
HETATM 3 O O1 EDO . A . E 4 -26.111 21.024 0.732 0.56 36.68 ? O1 EDO 404 X 1 
HETATM 4 O O1 EDO . C . E 4 -25.859 19.496 0.762 0.44 37.4 ? O1 EDO 404 X 1 
HETATM 5 C C2 EDO . A . E 4 -25.748 19.236 2.323 0.56 31.1 ? C2 EDO 404 X 1 
HETATM 6 C C2 EDO . C . E 4 -26.198 21.639 -0.35 0.44 33.11 ? C2 EDO 404 X 1 
HETATM 7 O O2 EDO . A . E 4 -27.024 18.824 2.821 0.56 34.48 ? O2 EDO 404 X 1 
HETATM 8 O O2 EDO . C . E 4 -27.21 22.651 -0.232 0.44 35.65 ? O2 EDO 404 X 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#