data_5LIX # _model_server_result.job_id X7C8CNb3EbC_9-QsX7MwBA _model_server_result.datetime_utc '2025-02-17 09:19:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lix # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5LIX # _exptl.entry_id 5LIX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LIX _cell.length_a 79.565 _cell.length_b 79.565 _cell.length_c 50.061 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LIX _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 11 X ALA 11 1_555 A N MLZ 12 X MLZ 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C MLZ 12 X MLZ 12 1_555 A N MET 13 X MET 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C GLY 26 X GLY 26 1_555 A N MLY 27 X MLY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MLY 27 X MLY 27 1_555 A N VAL 28 X VAL 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C VAL 28 X VAL 28 1_555 A N MLZ 29 X MLZ 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C MLZ 29 X MLZ 29 1_555 A N GLU 30 X GLU 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C VAL 32 X VAL 32 1_555 A N MLY 33 X MLY 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MLY 33 X MLY 33 1_555 A N VAL 34 X VAL 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C GLU 61 X GLU 61 1_555 A N MLZ 62 X MLZ 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C MLZ 62 X MLZ 62 1_555 A N ILE 63 X ILE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 A C GLU 65 X GLU 65 1_555 A N MLY 66 X MLY 66 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C GLU 65 X GLU 65 1_555 A N MLY 66 X MLY 66 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 A C MLY 66 X MLY 66 1_555 A N ALA 67 X ALA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C GLU 94 X GLU 94 1_555 A N MLY 95 X MLY 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 A C MLY 95 X MLY 95 1_555 A N THR 96 X THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 A C LEU 97 X LEU 97 1_555 A N MLZ 98 X MLZ 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale17 A C MLZ 98 X MLZ 98 1_555 A N ASP 99 X ASP 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 A C VAL 154 X VAL 154 1_555 A N MLZ 155 X MLZ 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale19 A C MLZ 155 X MLZ 155 1_555 A N ALA 156 X ALA 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale20 A C LEU 176 X LEU 176 1_555 A N MLZ 177 X MLZ 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale21 A C MLZ 177 X MLZ 177 1_555 A N TYR 178 X TYR 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 A C SER 202 X SER 202 1_555 A N MLY 203 X MLY 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 A C MLY 203 X MLY 203 1_555 A N GLY 204 X GLY 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale24 A C PRO 232 X PRO 232 1_555 A N MLZ 233 X MLZ 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale25 A C MLZ 233 X MLZ 233 1_555 A N ILE 234 X ILE 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale26 A C HIS 241 X HIS 241 1_555 A N MLY 242 X MLY 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale27 A C MLY 242 X MLY 242 1_555 A N MLZ 243 X MLZ 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale28 A C MLZ 243 X MLZ 243 1_555 A N THR 244 X THR 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale29 A C PRO 262 X PRO 262 1_555 A N MLY 263 X MLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale30 A C MLY 263 X MLY 263 1_555 A N SER 264 X SER 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5LIX _atom_sites.fract_transf_matrix[1][1] 0.012568 _atom_sites.fract_transf_matrix[1][2] 0.007256 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP X 1 401 350 NAP NAP . C 3 MK4 X 1 402 900 MK4 MK4 . D 4 EDO X 1 403 1 EDO EDO . E 5 HOH X 1 501 10 HOH HOH . E 5 HOH X 2 502 15 HOH HOH . E 5 HOH X 3 503 9 HOH HOH . E 5 HOH X 4 504 33 HOH HOH . E 5 HOH X 5 505 2 HOH HOH . E 5 HOH X 6 506 3 HOH HOH . E 5 HOH X 7 507 38 HOH HOH . E 5 HOH X 8 508 4 HOH HOH . E 5 HOH X 9 509 36 HOH HOH . E 5 HOH X 10 510 7 HOH HOH . E 5 HOH X 11 511 1 HOH HOH . E 5 HOH X 12 512 32 HOH HOH . E 5 HOH X 13 513 4 HOH HOH . E 5 HOH X 14 514 22 HOH HOH . E 5 HOH X 15 515 2 HOH HOH . E 5 HOH X 16 516 1 HOH HOH . E 5 HOH X 17 517 34 HOH HOH . E 5 HOH X 18 518 35 HOH HOH . E 5 HOH X 19 519 2 HOH HOH . E 5 HOH X 20 520 26 HOH HOH . E 5 HOH X 21 521 1 HOH HOH . E 5 HOH X 22 522 27 HOH HOH . E 5 HOH X 23 523 13 HOH HOH . E 5 HOH X 24 524 19 HOH HOH . E 5 HOH X 25 525 20 HOH HOH . E 5 HOH X 26 526 31 HOH HOH . E 5 HOH X 27 527 3 HOH HOH . E 5 HOH X 28 528 6 HOH HOH . E 5 HOH X 29 529 16 HOH HOH . E 5 HOH X 30 530 9 HOH HOH . E 5 HOH X 31 531 30 HOH HOH . E 5 HOH X 32 532 29 HOH HOH . E 5 HOH X 33 533 12 HOH HOH . E 5 HOH X 34 534 5 HOH HOH . E 5 HOH X 35 535 8 HOH HOH . E 5 HOH X 36 536 25 HOH HOH . E 5 HOH X 37 537 37 HOH HOH . E 5 HOH X 38 538 17 HOH HOH . E 5 HOH X 39 539 10 HOH HOH . E 5 HOH X 40 540 5 HOH HOH . E 5 HOH X 41 541 28 HOH HOH . E 5 HOH X 42 542 3 HOH HOH . E 5 HOH X 43 543 21 HOH HOH . E 5 HOH X 44 544 14 HOH HOH . E 5 HOH X 45 545 11 HOH HOH . E 5 HOH X 46 546 6 HOH HOH . E 5 HOH X 47 547 8 HOH HOH . E 5 HOH X 48 548 24 HOH HOH . E 5 HOH X 49 549 23 HOH HOH . E 5 HOH X 50 550 18 HOH HOH . E 5 HOH X 51 551 7 HOH HOH . E 5 HOH X 52 552 1 HOH HOH . E 5 HOH X 53 553 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . A . D 4 9.873 35.327 -1.222 0.56 30.12 ? C1 EDO 403 X 1 HETATM 2 C C1 EDO . B . D 4 6.66 34.832 0.228 0.44 25.35 ? C1 EDO 403 X 1 HETATM 3 O O1 EDO . A . D 4 8.449 35.183 -1.048 0.56 34.43 ? O1 EDO 403 X 1 HETATM 4 O O1 EDO . B . D 4 6.064 36.044 0.707 0.44 32 ? O1 EDO 403 X 1 HETATM 5 C C2 EDO . A . D 4 10.17 35.777 -2.651 0.56 22.88 ? C2 EDO 403 X 1 HETATM 6 C C2 EDO . B . D 4 8.181 34.934 0.292 0.44 26.58 ? C2 EDO 403 X 1 HETATM 7 O O2 EDO . A . D 4 9.764 37.136 -2.82 0.56 27.14 ? O2 EDO 403 X 1 HETATM 8 O O2 EDO . B . D 4 8.715 35.287 -0.991 0.44 34.21 ? O2 EDO 403 X 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #