data_5LIY # _model_server_result.job_id pqSdtrZ8BI0a1iLLJ96pMg _model_server_result.datetime_utc '2024-11-13 04:08:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5liy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5LIY # _exptl.entry_id 5LIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 714.22 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{5-chloro-2-[(pentabromobenzyl)carbamoyl]phenoxy}acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LIY _cell.length_a 79.458 _cell.length_b 79.458 _cell.length_c 49.418 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 32 X VAL 32 1_555 A N MLY 33 X MLY 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale2 A C MLY 33 X MLY 33 1_555 A N VAL 34 X VAL 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.279 ? covale ? covale3 A C GLU 61 X GLU 61 1_555 A N MLZ 62 X MLZ 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A C MLZ 62 X MLZ 62 1_555 A N ILE 63 X ILE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.243 ? covale ? covale5 A C GLU 94 X GLU 94 1_555 A N MLY 95 X MLY 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale6 A C MLY 95 X MLY 95 1_555 A N THR 96 X THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? covale ? covale7 A C VAL 154 X VAL 154 1_555 A N MLZ 155 X MLZ 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale8 A C MLZ 155 X MLZ 155 1_555 A N ALA 156 X ALA 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale9 A C LEU 176 X LEU 176 1_555 A N MLZ 177 X MLZ 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MLZ 177 X MLZ 177 1_555 A N TYR 178 X TYR 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 A C SER 202 X SER 202 1_555 A N MLY 203 X MLY 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.264 ? covale ? covale12 A C MLY 203 X MLY 203 1_555 A N GLY 204 X GLY 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale13 A C HIS 241 X HIS 241 1_555 A N MLY 242 X MLY 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.271 ? covale ? covale14 A C MLY 242 X MLY 242 1_555 A N MLZ 243 X MLZ 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 A C MLZ 243 X MLZ 243 1_555 A N THR 244 X THR 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale16 A C PRO 262 X PRO 262 1_555 A N MLY 263 X MLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 A C MLY 263 X MLY 263 1_555 A N SER 264 X SER 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C16 H9 Br5 Cl N O4' _chem_comp.formula_weight 714.22 _chem_comp.id DQP _chem_comp.mon_nstd_flag . _chem_comp.name '{5-chloro-2-[(pentabromobenzyl)carbamoyl]phenoxy}acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR6 C5 DQP sing 83 n n BR4 C3 DQP sing 84 n n C5 C3 DQP doub 85 n y C5 C6 DQP sing 86 n y BR3 C6 DQP sing 87 n n C3 C1 DQP sing 88 n y C6 C4 DQP doub 89 n y O16 C9 DQP doub 90 n n C12 C14 DQP doub 91 n y C12 C10 DQP sing 92 n y C1 C7 DQP sing 93 n n C1 C2 DQP doub 94 n y C9 C10 DQP sing 95 n n C9 N8 DQP sing 96 n n C14 C15 DQP sing 97 n y C4 C2 DQP sing 98 n y C4 BR7 DQP sing 99 n n C7 N8 DQP sing 100 n n C10 C11 DQP doub 101 n y C2 BR5 DQP sing 102 n n C15 CL2 DQP sing 103 n n C15 C13 DQP doub 104 n y C11 C13 DQP sing 105 n y C11 O17 DQP sing 106 n n O17 C18 DQP sing 107 n n C18 C19 DQP sing 108 n n O20 C19 DQP doub 109 n n C19 O21 DQP sing 110 n n C7 H1 DQP sing 111 n n C7 H2 DQP sing 112 n n N8 H3 DQP sing 113 n n C12 H4 DQP sing 114 n n C13 H5 DQP sing 115 n n C14 H6 DQP sing 116 n n C18 H7 DQP sing 117 n n C18 H8 DQP sing 118 n n O21 H9 DQP sing 119 n n # _atom_sites.entry_id 5LIY _atom_sites.fract_transf_matrix[1][1] 0.012585 _atom_sites.fract_transf_matrix[1][2] 0.007266 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014532 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP X 1 401 350 NAP NAP . C 3 DQP X 1 402 900 DQP DQP . D 4 EDO X 1 403 1 EDO EDO . E 5 HOH X 1 501 4 HOH HOH . E 5 HOH X 2 502 1 HOH HOH . E 5 HOH X 3 503 10 HOH HOH . E 5 HOH X 4 504 17 HOH HOH . E 5 HOH X 5 505 1 HOH HOH . E 5 HOH X 6 506 15 HOH HOH . E 5 HOH X 7 507 14 HOH HOH . E 5 HOH X 8 508 11 HOH HOH . E 5 HOH X 9 509 20 HOH HOH . E 5 HOH X 10 510 6 HOH HOH . E 5 HOH X 11 511 5 HOH HOH . E 5 HOH X 12 512 7 HOH HOH . E 5 HOH X 13 513 3 HOH HOH . E 5 HOH X 14 514 3 HOH HOH . E 5 HOH X 15 515 12 HOH HOH . E 5 HOH X 16 516 13 HOH HOH . E 5 HOH X 17 517 11 HOH HOH . E 5 HOH X 18 518 5 HOH HOH . E 5 HOH X 19 519 8 HOH HOH . E 5 HOH X 20 520 13 HOH HOH . E 5 HOH X 21 521 10 HOH HOH . E 5 HOH X 22 522 19 HOH HOH . E 5 HOH X 23 523 18 HOH HOH . E 5 HOH X 24 524 9 HOH HOH . E 5 HOH X 25 525 23 HOH HOH . E 5 HOH X 26 526 4 HOH HOH . E 5 HOH X 27 527 21 HOH HOH . E 5 HOH X 28 528 4 HOH HOH . E 5 HOH X 29 529 22 HOH HOH . E 5 HOH X 30 530 15 HOH HOH . E 5 HOH X 31 531 6 HOH HOH . E 5 HOH X 32 532 8 HOH HOH . E 5 HOH X 33 533 2 HOH HOH . E 5 HOH X 34 534 12 HOH HOH . E 5 HOH X 35 535 9 HOH HOH . E 5 HOH X 36 536 2 HOH HOH . E 5 HOH X 37 537 14 HOH HOH . E 5 HOH X 38 538 2 HOH HOH . E 5 HOH X 39 539 16 HOH HOH . E 5 HOH X 40 540 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DQP . A . C 3 -4.276 23.35 -6.375 0.55 38.47 ? C1 DQP 402 X 1 HETATM 2 C C1 DQP . B . C 3 3.019 26.475 -3.605 0.45 48.52 ? C1 DQP 402 X 1 HETATM 3 C C2 DQP . A . C 3 -3.44 22.627 -5.535 0.55 34.06 ? C2 DQP 402 X 1 HETATM 4 C C2 DQP . B . C 3 2.532 27.056 -2.423 0.45 45.26 ? C2 DQP 402 X 1 HETATM 5 C C3 DQP . A . C 3 -4.136 23.182 -7.751 0.55 36.4 ? C3 DQP 402 X 1 HETATM 6 C C3 DQP . B . C 3 2.213 25.606 -4.296 0.45 50.22 ? C3 DQP 402 X 1 HETATM 7 C C4 DQP . A . C 3 -2.523 21.735 -6.074 0.55 30.8 ? C4 DQP 402 X 1 HETATM 8 C C4 DQP . B . C 3 1.251 26.769 -1.969 0.45 34.62 ? C4 DQP 402 X 1 HETATM 9 C C5 DQP . A . C 3 -3.208 22.293 -8.276 0.55 33.46 ? C5 DQP 402 X 1 HETATM 10 C C5 DQP . B . C 3 0.959 25.317 -3.857 0.45 48.52 ? C5 DQP 402 X 1 HETATM 11 C C6 DQP . A . C 3 -2.406 21.562 -7.431 0.55 37.13 ? C6 DQP 402 X 1 HETATM 12 C C6 DQP . B . C 3 0.484 25.89 -2.702 0.45 44.76 ? C6 DQP 402 X 1 HETATM 13 C C7 DQP . A . C 3 -5.233 24.355 -5.766 0.55 23.56 ? C7 DQP 402 X 1 HETATM 14 C C7 DQP . B . C 3 4.384 26.703 -4.216 0.45 49.31 ? C7 DQP 402 X 1 HETATM 15 N N8 DQP . A . C 3 -4.207 25.295 -5.34 0.55 33.39 ? N8 DQP 402 X 1 HETATM 16 N N8 DQP . B . C 3 4.284 27.691 -5.298 0.45 57.78 ? N8 DQP 402 X 1 HETATM 17 C C9 DQP . A . C 3 -3.503 26.11 -6.136 0.55 39.97 ? C9 DQP 402 X 1 HETATM 18 C C9 DQP . B . C 3 4.381 27.59 -6.635 0.45 58.68 ? C9 DQP 402 X 1 HETATM 19 C C10 DQP . A . C 3 -2.396 26.992 -5.637 0.55 36.71 ? C10 DQP 402 X 1 HETATM 20 C C10 DQP . B . C 3 4.284 28.796 -7.532 0.45 51.24 ? C10 DQP 402 X 1 HETATM 21 C C11 DQP . A . C 3 -2.437 27.715 -4.456 0.55 35.69 ? C11 DQP 402 X 1 HETATM 22 C C11 DQP . B . C 3 4.801 30.005 -7.089 0.45 56.19 ? C11 DQP 402 X 1 HETATM 23 C C12 DQP . A . C 3 -1.255 27.036 -6.434 0.55 48.97 ? C12 DQP 402 X 1 HETATM 24 C C12 DQP . B . C 3 3.744 28.703 -8.818 0.45 58.99 ? C12 DQP 402 X 1 HETATM 25 C C13 DQP . A . C 3 -1.333 28.494 -4.089 0.55 39.8 ? C13 DQP 402 X 1 HETATM 26 C C13 DQP . B . C 3 4.776 31.125 -7.893 0.45 54.08 ? C13 DQP 402 X 1 HETATM 27 C C14 DQP . A . C 3 -0.16 27.812 -6.074 0.55 47.71 ? C14 DQP 402 X 1 HETATM 28 C C14 DQP . B . C 3 3.714 29.835 -9.635 0.45 54.91 ? C14 DQP 402 X 1 HETATM 29 C C15 DQP . A . C 3 -0.193 28.545 -4.895 0.55 45 ? C15 DQP 402 X 1 HETATM 30 C C15 DQP . B . C 3 4.233 31.041 -9.159 0.45 56.85 ? C15 DQP 402 X 1 HETATM 31 O O16 DQP . A . C 3 -3.717 26.154 -7.332 0.55 41.82 ? O16 DQP 402 X 1 HETATM 32 O O16 DQP . B . C 3 4.618 26.539 -7.203 0.45 62.7 ? O16 DQP 402 X 1 HETATM 33 O O17 DQP . A . C 3 -3.557 27.662 -3.663 0.55 40.68 ? O17 DQP 402 X 1 HETATM 34 O O17 DQP . B . C 3 5.356 30.121 -5.848 0.45 62.33 ? O17 DQP 402 X 1 HETATM 35 C C18 DQP . A . C 3 -3.623 28.383 -2.439 0.55 26.13 ? C18 DQP 402 X 1 HETATM 36 C C18 DQP . B . C 3 4.659 30.746 -4.773 0.45 58.43 ? C18 DQP 402 X 1 HETATM 37 C C19 DQP . A . C 3 -4.574 27.709 -1.47 0.55 33.27 ? C19 DQP 402 X 1 HETATM 38 C C19 DQP . B . C 3 5.242 30.173 -3.507 0.45 54.84 ? C19 DQP 402 X 1 HETATM 39 O O20 DQP . A . C 3 -4.725 26.47 -1.473 0.55 31.97 ? O20 DQP 402 X 1 HETATM 40 O O20 DQP . B . C 3 5.979 29.166 -3.602 0.45 62.37 ? O20 DQP 402 X 1 HETATM 41 O O21 DQP . A . C 3 -5.207 28.432 -0.68 0.55 33.63 ? O21 DQP 402 X 1 HETATM 42 O O21 DQP . B . C 3 4.973 30.721 -2.417 0.45 54.69 ? O21 DQP 402 X 1 HETATM 43 CL CL2 DQP . A . C 3 1.244 29.539 -4.45 0.55 45.48 ? CL2 DQP 402 X 1 HETATM 44 CL CL2 DQP . B . C 3 4.236 32.538 -10.138 0.45 54.68 ? CL2 DQP 402 X 1 HETATM 45 BR BR3 DQP . A . C 3 -1.11 20.36 -8.124 0.55 38.73 ? BR3 DQP 402 X 1 HETATM 46 BR BR3 DQP . B . C 3 -1.319 25.664 -2.274 0.45 39.89 ? BR3 DQP 402 X 1 HETATM 47 BR BR4 DQP . A . C 3 -5.224 24.098 -8.982 0.55 35.61 ? BR4 DQP 402 X 1 HETATM 48 BR BR4 DQP . B . C 3 2.795 24.775 -5.883 0.45 62.71 ? BR4 DQP 402 X 1 HETATM 49 BR BR5 DQP . A . C 3 -3.582 22.812 -3.658 0.55 32.16 ? BR5 DQP 402 X 1 HETATM 50 BR BR5 DQP . B . C 3 3.539 28.255 -1.369 0.45 45.63 ? BR5 DQP 402 X 1 HETATM 51 BR BR6 DQP . A . C 3 -3.06 22.059 -10.151 0.55 42.16 ? BR6 DQP 402 X 1 HETATM 52 BR BR6 DQP . B . C 3 -0.041 24.125 -4.922 0.45 44.32 ? BR6 DQP 402 X 1 HETATM 53 BR BR7 DQP . A . C 3 -1.369 20.724 -4.986 0.55 34.16 ? BR7 DQP 402 X 1 HETATM 54 BR BR7 DQP . B . C 3 0.445 27.786 -0.569 0.45 43.3 ? BR7 DQP 402 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #