data_5LIY # _model_server_result.job_id hic68I1OzV6S8VgIk0Lk8w _model_server_result.datetime_utc '2024-11-13 04:07:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5liy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5LIY # _exptl.entry_id 5LIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LIY _cell.length_a 79.458 _cell.length_b 79.458 _cell.length_c 49.418 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 32 X VAL 32 1_555 A N MLY 33 X MLY 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale2 A C MLY 33 X MLY 33 1_555 A N VAL 34 X VAL 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.279 ? covale ? covale3 A C GLU 61 X GLU 61 1_555 A N MLZ 62 X MLZ 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A C MLZ 62 X MLZ 62 1_555 A N ILE 63 X ILE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.243 ? covale ? covale5 A C GLU 94 X GLU 94 1_555 A N MLY 95 X MLY 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale6 A C MLY 95 X MLY 95 1_555 A N THR 96 X THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? covale ? covale7 A C VAL 154 X VAL 154 1_555 A N MLZ 155 X MLZ 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale8 A C MLZ 155 X MLZ 155 1_555 A N ALA 156 X ALA 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale9 A C LEU 176 X LEU 176 1_555 A N MLZ 177 X MLZ 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MLZ 177 X MLZ 177 1_555 A N TYR 178 X TYR 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 A C SER 202 X SER 202 1_555 A N MLY 203 X MLY 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.264 ? covale ? covale12 A C MLY 203 X MLY 203 1_555 A N GLY 204 X GLY 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale13 A C HIS 241 X HIS 241 1_555 A N MLY 242 X MLY 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.271 ? covale ? covale14 A C MLY 242 X MLY 242 1_555 A N MLZ 243 X MLZ 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 A C MLZ 243 X MLZ 243 1_555 A N THR 244 X THR 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale16 A C PRO 262 X PRO 262 1_555 A N MLY 263 X MLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 A C MLY 263 X MLY 263 1_555 A N SER 264 X SER 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 120 n n C1 C2 EDO sing 121 n n C1 H11 EDO sing 122 n n C1 H12 EDO sing 123 n n O1 HO1 EDO sing 124 n n C2 O2 EDO sing 125 n n C2 H21 EDO sing 126 n n C2 H22 EDO sing 127 n n O2 HO2 EDO sing 128 n n # _atom_sites.entry_id 5LIY _atom_sites.fract_transf_matrix[1][1] 0.012585 _atom_sites.fract_transf_matrix[1][2] 0.007266 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014532 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP X 1 401 350 NAP NAP . C 3 DQP X 1 402 900 DQP DQP . D 4 EDO X 1 403 1 EDO EDO . E 5 HOH X 1 501 4 HOH HOH . E 5 HOH X 2 502 1 HOH HOH . E 5 HOH X 3 503 10 HOH HOH . E 5 HOH X 4 504 17 HOH HOH . E 5 HOH X 5 505 1 HOH HOH . E 5 HOH X 6 506 15 HOH HOH . E 5 HOH X 7 507 14 HOH HOH . E 5 HOH X 8 508 11 HOH HOH . E 5 HOH X 9 509 20 HOH HOH . E 5 HOH X 10 510 6 HOH HOH . E 5 HOH X 11 511 5 HOH HOH . E 5 HOH X 12 512 7 HOH HOH . E 5 HOH X 13 513 3 HOH HOH . E 5 HOH X 14 514 3 HOH HOH . E 5 HOH X 15 515 12 HOH HOH . E 5 HOH X 16 516 13 HOH HOH . E 5 HOH X 17 517 11 HOH HOH . E 5 HOH X 18 518 5 HOH HOH . E 5 HOH X 19 519 8 HOH HOH . E 5 HOH X 20 520 13 HOH HOH . E 5 HOH X 21 521 10 HOH HOH . E 5 HOH X 22 522 19 HOH HOH . E 5 HOH X 23 523 18 HOH HOH . E 5 HOH X 24 524 9 HOH HOH . E 5 HOH X 25 525 23 HOH HOH . E 5 HOH X 26 526 4 HOH HOH . E 5 HOH X 27 527 21 HOH HOH . E 5 HOH X 28 528 4 HOH HOH . E 5 HOH X 29 529 22 HOH HOH . E 5 HOH X 30 530 15 HOH HOH . E 5 HOH X 31 531 6 HOH HOH . E 5 HOH X 32 532 8 HOH HOH . E 5 HOH X 33 533 2 HOH HOH . E 5 HOH X 34 534 12 HOH HOH . E 5 HOH X 35 535 9 HOH HOH . E 5 HOH X 36 536 2 HOH HOH . E 5 HOH X 37 537 14 HOH HOH . E 5 HOH X 38 538 2 HOH HOH . E 5 HOH X 39 539 16 HOH HOH . E 5 HOH X 40 540 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . A . D 4 -26.349 21.124 0.17 0.04 37.26 ? C1 EDO 403 X 1 HETATM 2 C C1 EDO . B . D 4 -26.349 21.124 0.17 0.58 37.41 ? C1 EDO 403 X 1 HETATM 3 C C1 EDO . C . D 4 -26.195 19.972 1.014 0.38 37.95 ? C1 EDO 403 X 1 HETATM 4 O O1 EDO . A . D 4 -26.008 20.383 1.353 0.04 36.81 ? O1 EDO 403 X 1 HETATM 5 O O1 EDO . B . D 4 -26.008 20.383 1.353 0.58 38.51 ? O1 EDO 403 X 1 HETATM 6 O O1 EDO . C . D 4 -26.25 21.342 0.675 0.38 37.36 ? O1 EDO 403 X 1 HETATM 7 C C2 EDO . A . D 4 -26.976 22.466 0.536 0.04 37.54 ? C2 EDO 403 X 1 HETATM 8 C C2 EDO . B . D 4 -26.976 22.466 0.536 0.58 37.41 ? C2 EDO 403 X 1 HETATM 9 C C2 EDO . C . D 4 -25.865 19.692 2.465 0.38 29.87 ? C2 EDO 403 X 1 HETATM 10 O O2 EDO . A . D 4 -28.252 22.618 -0.101 0.04 38.1 ? O2 EDO 403 X 1 HETATM 11 O O2 EDO . B . D 4 -28.252 22.618 -0.101 0.58 35.2 ? O2 EDO 403 X 1 HETATM 12 O O2 EDO . C . D 4 -26.846 18.881 3.065 0.38 29.94 ? O2 EDO 403 X 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 12 #