data_5LJ1 # _model_server_result.job_id v2U_6bUBo4rRVq1hoQ6L-A _model_server_result.datetime_utc '2024-10-19 03:59:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5LJ1 # _exptl.entry_id 5LJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.606 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-(((3R,4R,5S)-3-((4,4-difluorocyclohexyl)methoxy)-5-methoxypiperidin-4-yl)amino)-3-methyl-5-(5-methylpyridin-3-yl)-1,7-naphthyridin-2(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LJ1 _cell.length_a 41.67 _cell.length_b 109.19 _cell.length_c 30.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H35 F2 N5 O3' _chem_comp.formula_weight 527.606 _chem_comp.id 6XX _chem_comp.mon_nstd_flag . _chem_comp.name 8-(((3R,4R,5S)-3-((4,4-difluorocyclohexyl)methoxy)-5-methoxypiperidin-4-yl)amino)-3-methyl-5-(5-methylpyridin-3-yl)-1,7-naphthyridin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 O05 6XX sing 1 n n N11 C08 6XX sing 2 n n N11 C13 6XX sing 3 n n C08 C06 6XX sing 4 n n O05 C06 6XX sing 5 n n C13 C16 6XX sing 6 n n C06 C39 6XX sing 7 n n O18 C16 6XX sing 8 n n O18 C19 6XX sing 9 n n C16 C39 6XX sing 10 n n C19 C22 6XX sing 11 n n C39 N41 6XX sing 12 n n C36 C22 6XX sing 13 n n C36 C33 6XX sing 14 n n N41 C43 6XX sing 15 n n C22 C24 6XX sing 16 n n C33 C30 6XX sing 17 n n F32 C30 6XX sing 18 n n C24 C27 6XX sing 19 n n C30 C27 6XX sing 20 n n C30 F31 6XX sing 21 n n C43 N44 6XX doub 22 n y C43 C73 6XX sing 23 n y N71 C73 6XX sing 24 n n N71 C69 6XX sing 25 n n O70 C69 6XX doub 26 n n N44 C45 6XX sing 27 n y C73 C61 6XX doub 28 n y C69 C64 6XX sing 29 n n C45 C47 6XX doub 30 n y C61 C47 6XX sing 31 n y C61 C62 6XX sing 32 n n C64 C62 6XX doub 33 n n C64 C65 6XX sing 34 n n C47 C48 6XX sing 35 n n C48 C59 6XX doub 36 n y C48 C49 6XX sing 37 n y C59 C54 6XX sing 38 n y C49 N51 6XX doub 39 n y C54 C55 6XX sing 40 n n C54 C52 6XX doub 41 n y N51 C52 6XX sing 42 n y C13 H1 6XX sing 43 n n C13 H2 6XX sing 44 n n C22 H3 6XX sing 45 n n C24 H4 6XX sing 46 n n C24 H5 6XX sing 47 n n C01 H6 6XX sing 48 n n C01 H7 6XX sing 49 n n C01 H8 6XX sing 50 n n C06 H9 6XX sing 51 n n C08 H10 6XX sing 52 n n C08 H11 6XX sing 53 n n N11 H12 6XX sing 54 n n C16 H14 6XX sing 55 n n C19 H15 6XX sing 56 n n C19 H16 6XX sing 57 n n C27 H17 6XX sing 58 n n C27 H18 6XX sing 59 n n C33 H19 6XX sing 60 n n C33 H20 6XX sing 61 n n C36 H21 6XX sing 62 n n C36 H22 6XX sing 63 n n C39 H23 6XX sing 64 n n N41 H24 6XX sing 65 n n C45 H25 6XX sing 66 n n C49 H26 6XX sing 67 n n C52 H27 6XX sing 68 n n C55 H28 6XX sing 69 n n C55 H29 6XX sing 70 n n C55 H30 6XX sing 71 n n C59 H31 6XX sing 72 n n C62 H32 6XX sing 73 n n C65 H33 6XX sing 74 n n C65 H34 6XX sing 75 n n C65 H35 6XX sing 76 n n N71 H36 6XX sing 77 n n # _atom_sites.entry_id 5LJ1 _atom_sites.fract_transf_matrix[1][1] 0.023998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.033047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 3 6XX A 1 202 1 6XX LIG . D 4 HOH A 1 301 53 HOH HOH . D 4 HOH A 2 302 64 HOH HOH . D 4 HOH A 3 303 66 HOH HOH . D 4 HOH A 4 304 121 HOH HOH . D 4 HOH A 5 305 155 HOH HOH . D 4 HOH A 6 306 27 HOH HOH . D 4 HOH A 7 307 11 HOH HOH . D 4 HOH A 8 308 78 HOH HOH . D 4 HOH A 9 309 141 HOH HOH . D 4 HOH A 10 310 80 HOH HOH . D 4 HOH A 11 311 36 HOH HOH . D 4 HOH A 12 312 6 HOH HOH . D 4 HOH A 13 313 23 HOH HOH . D 4 HOH A 14 314 9 HOH HOH . D 4 HOH A 15 315 58 HOH HOH . D 4 HOH A 16 316 81 HOH HOH . D 4 HOH A 17 317 15 HOH HOH . D 4 HOH A 18 318 13 HOH HOH . D 4 HOH A 19 319 4 HOH HOH . D 4 HOH A 20 320 68 HOH HOH . D 4 HOH A 21 321 135 HOH HOH . D 4 HOH A 22 322 147 HOH HOH . D 4 HOH A 23 323 69 HOH HOH . D 4 HOH A 24 324 125 HOH HOH . D 4 HOH A 25 325 74 HOH HOH . D 4 HOH A 26 326 39 HOH HOH . D 4 HOH A 27 327 139 HOH HOH . D 4 HOH A 28 328 148 HOH HOH . D 4 HOH A 29 329 108 HOH HOH . D 4 HOH A 30 330 3 HOH HOH . D 4 HOH A 31 331 75 HOH HOH . D 4 HOH A 32 332 106 HOH HOH . D 4 HOH A 33 333 123 HOH HOH . D 4 HOH A 34 334 5 HOH HOH . D 4 HOH A 35 335 19 HOH HOH . D 4 HOH A 36 336 31 HOH HOH . D 4 HOH A 37 337 111 HOH HOH . D 4 HOH A 38 338 67 HOH HOH . D 4 HOH A 39 339 157 HOH HOH . D 4 HOH A 40 340 62 HOH HOH . D 4 HOH A 41 341 56 HOH HOH . D 4 HOH A 42 342 8 HOH HOH . D 4 HOH A 43 343 41 HOH HOH . D 4 HOH A 44 344 145 HOH HOH . D 4 HOH A 45 345 32 HOH HOH . D 4 HOH A 46 346 28 HOH HOH . D 4 HOH A 47 347 73 HOH HOH . D 4 HOH A 48 348 63 HOH HOH . D 4 HOH A 49 349 60 HOH HOH . D 4 HOH A 50 350 42 HOH HOH . D 4 HOH A 51 351 102 HOH HOH . D 4 HOH A 52 352 35 HOH HOH . D 4 HOH A 53 353 72 HOH HOH . D 4 HOH A 54 354 18 HOH HOH . D 4 HOH A 55 355 97 HOH HOH . D 4 HOH A 56 356 84 HOH HOH . D 4 HOH A 57 357 61 HOH HOH . D 4 HOH A 58 358 7 HOH HOH . D 4 HOH A 59 359 77 HOH HOH . D 4 HOH A 60 360 24 HOH HOH . D 4 HOH A 61 361 25 HOH HOH . D 4 HOH A 62 362 124 HOH HOH . D 4 HOH A 63 363 156 HOH HOH . D 4 HOH A 64 364 49 HOH HOH . D 4 HOH A 65 365 26 HOH HOH . D 4 HOH A 66 366 129 HOH HOH . D 4 HOH A 67 367 150 HOH HOH . D 4 HOH A 68 368 109 HOH HOH . D 4 HOH A 69 369 146 HOH HOH . D 4 HOH A 70 370 20 HOH HOH . D 4 HOH A 71 371 82 HOH HOH . D 4 HOH A 72 372 79 HOH HOH . D 4 HOH A 73 373 12 HOH HOH . D 4 HOH A 74 374 37 HOH HOH . D 4 HOH A 75 375 99 HOH HOH . D 4 HOH A 76 376 2 HOH HOH . D 4 HOH A 77 377 21 HOH HOH . D 4 HOH A 78 378 100 HOH HOH . D 4 HOH A 79 379 143 HOH HOH . D 4 HOH A 80 380 17 HOH HOH . D 4 HOH A 81 381 91 HOH HOH . D 4 HOH A 82 382 89 HOH HOH . D 4 HOH A 83 383 131 HOH HOH . D 4 HOH A 84 384 158 HOH HOH . D 4 HOH A 85 385 140 HOH HOH . D 4 HOH A 86 386 86 HOH HOH . D 4 HOH A 87 387 96 HOH HOH . D 4 HOH A 88 388 113 HOH HOH . D 4 HOH A 89 389 87 HOH HOH . D 4 HOH A 90 390 118 HOH HOH . D 4 HOH A 91 391 90 HOH HOH . D 4 HOH A 92 392 76 HOH HOH . D 4 HOH A 93 393 34 HOH HOH . D 4 HOH A 94 394 45 HOH HOH . D 4 HOH A 95 395 38 HOH HOH . D 4 HOH A 96 396 48 HOH HOH . D 4 HOH A 97 397 1 HOH HOH . D 4 HOH A 98 398 10 HOH HOH . D 4 HOH A 99 399 83 HOH HOH . D 4 HOH A 100 400 101 HOH HOH . D 4 HOH A 101 401 120 HOH HOH . D 4 HOH A 102 402 55 HOH HOH . D 4 HOH A 103 403 152 HOH HOH . D 4 HOH A 104 404 153 HOH HOH . D 4 HOH A 105 405 142 HOH HOH . D 4 HOH A 106 406 44 HOH HOH . D 4 HOH A 107 407 134 HOH HOH . D 4 HOH A 108 408 85 HOH HOH . D 4 HOH A 109 409 71 HOH HOH . D 4 HOH A 110 410 164 HOH HOH . D 4 HOH A 111 411 16 HOH HOH . D 4 HOH A 112 412 33 HOH HOH . D 4 HOH A 113 413 51 HOH HOH . D 4 HOH A 114 414 119 HOH HOH . D 4 HOH A 115 415 161 HOH HOH . D 4 HOH A 116 416 159 HOH HOH . D 4 HOH A 117 417 40 HOH HOH . D 4 HOH A 118 418 110 HOH HOH . D 4 HOH A 119 419 104 HOH HOH . D 4 HOH A 120 420 138 HOH HOH . D 4 HOH A 121 421 54 HOH HOH . D 4 HOH A 122 422 30 HOH HOH . D 4 HOH A 123 423 22 HOH HOH . D 4 HOH A 124 424 117 HOH HOH . D 4 HOH A 125 425 115 HOH HOH . D 4 HOH A 126 426 95 HOH HOH . D 4 HOH A 127 427 151 HOH HOH . D 4 HOH A 128 428 133 HOH HOH . D 4 HOH A 129 429 98 HOH HOH . D 4 HOH A 130 430 65 HOH HOH . D 4 HOH A 131 431 126 HOH HOH . D 4 HOH A 132 432 132 HOH HOH . D 4 HOH A 133 433 144 HOH HOH . D 4 HOH A 134 434 114 HOH HOH . D 4 HOH A 135 435 43 HOH HOH . D 4 HOH A 136 436 107 HOH HOH . D 4 HOH A 137 437 149 HOH HOH . D 4 HOH A 138 438 57 HOH HOH . D 4 HOH A 139 439 50 HOH HOH . D 4 HOH A 140 440 160 HOH HOH . D 4 HOH A 141 441 93 HOH HOH . D 4 HOH A 142 442 105 HOH HOH . D 4 HOH A 143 443 130 HOH HOH . D 4 HOH A 144 444 46 HOH HOH . D 4 HOH A 145 445 59 HOH HOH . D 4 HOH A 146 446 127 HOH HOH . D 4 HOH A 147 447 47 HOH HOH . D 4 HOH A 148 448 103 HOH HOH . D 4 HOH A 149 449 52 HOH HOH . D 4 HOH A 150 450 163 HOH HOH . D 4 HOH A 151 451 92 HOH HOH . D 4 HOH A 152 452 70 HOH HOH . D 4 HOH A 153 453 29 HOH HOH . D 4 HOH A 154 454 14 HOH HOH . D 4 HOH A 155 455 136 HOH HOH . D 4 HOH A 156 456 154 HOH HOH . D 4 HOH A 157 457 162 HOH HOH . D 4 HOH A 158 458 88 HOH HOH . D 4 HOH A 159 459 94 HOH HOH . D 4 HOH A 160 460 122 HOH HOH . D 4 HOH A 161 461 128 HOH HOH . D 4 HOH A 162 462 112 HOH HOH . D 4 HOH A 163 463 137 HOH HOH . D 4 HOH A 164 464 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 6XX . . . C 3 -23.569 -4.429 0.542 1 28.33 ? C13 6XX 202 A 1 HETATM 2 C C22 6XX . . . C 3 -26.997 -2.503 2.857 1 45.69 ? C22 6XX 202 A 1 HETATM 3 C C24 6XX . . . C 3 -27.415 -1.266 3.625 1 50.01 ? C24 6XX 202 A 1 HETATM 4 C C01 6XX . . . C 3 -27.803 -6.349 -0.681 1 35.18 ? C01 6XX 202 A 1 HETATM 5 O O05 6XX . . . C 3 -27.014 -5.581 0.219 1 35.57 ? O05 6XX 202 A 1 HETATM 6 C C06 6XX . . . C 3 -25.865 -6.269 0.736 1 33.16 ? C06 6XX 202 A 1 HETATM 7 C C08 6XX . . . C 3 -24.78 -6.322 -0.33 1 32.6 ? C08 6XX 202 A 1 HETATM 8 N N11 6XX . . . C 3 -24.265 -4.989 -0.617 1 27.05 ? N11 6XX 202 A 1 HETATM 9 C C16 6XX . . . C 3 -24.586 -4.268 1.661 1 31.35 ? C16 6XX 202 A 1 HETATM 10 O O18 6XX . . . C 3 -25.545 -3.345 1.136 1 37.98 ? O18 6XX 202 A 1 HETATM 11 C C19 6XX . . . C 3 -25.844 -2.209 1.939 1 37.73 ? C19 6XX 202 A 1 HETATM 12 C C27 6XX . . . C 3 -28.514 -1.598 4.629 1 57.31 ? C27 6XX 202 A 1 HETATM 13 C C30 6XX . . . C 3 -29.684 -2.319 4.013 1 62.14 ? C30 6XX 202 A 1 HETATM 14 F F31 6XX . . . C 3 -30.529 -2.759 4.999 1 67.45 ? F31 6XX 202 A 1 HETATM 15 F F32 6XX . . . C 3 -30.44 -1.443 3.27 1 62.45 ? F32 6XX 202 A 1 HETATM 16 C C33 6XX . . . C 3 -29.251 -3.474 3.157 1 58.1 ? C33 6XX 202 A 1 HETATM 17 C C36 6XX . . . C 3 -28.206 -3.042 2.132 1 49.46 ? C36 6XX 202 A 1 HETATM 18 C C39 6XX . . . C 3 -25.383 -5.525 1.973 1 32.51 ? C39 6XX 202 A 1 HETATM 19 N N41 6XX . . . C 3 -24.653 -6.45 2.822 1 32.85 ? N41 6XX 202 A 1 HETATM 20 C C43 6XX . . . C 3 -24.526 -6.31 4.155 1 33.69 ? C43 6XX 202 A 1 HETATM 21 N N44 6XX . . . C 3 -25.277 -5.341 4.751 1 38.06 ? N44 6XX 202 A 1 HETATM 22 C C45 6XX . . . C 3 -25.186 -5.146 6.07 1 38.08 ? C45 6XX 202 A 1 HETATM 23 C C47 6XX . . . C 3 -24.381 -5.871 6.932 1 39.68 ? C47 6XX 202 A 1 HETATM 24 C C48 6XX . . . C 3 -24.374 -5.548 8.391 1 43.89 ? C48 6XX 202 A 1 HETATM 25 C C49 6XX . . . C 3 -24.618 -6.496 9.382 1 48.24 ? C49 6XX 202 A 1 HETATM 26 N N51 6XX . . . C 3 -24.641 -6.215 10.694 1 54.1 ? N51 6XX 202 A 1 HETATM 27 C C52 6XX . . . C 3 -24.42 -4.943 11.055 1 46.92 ? C52 6XX 202 A 1 HETATM 28 C C54 6XX . . . C 3 -24.174 -3.916 10.157 1 48.53 ? C54 6XX 202 A 1 HETATM 29 C C55 6XX . . . C 3 -23.92 -2.504 10.619 1 51.07 ? C55 6XX 202 A 1 HETATM 30 C C59 6XX . . . C 3 -24.16 -4.244 8.813 1 47.13 ? C59 6XX 202 A 1 HETATM 31 C C61 6XX . . . C 3 -23.573 -6.872 6.365 1 34.83 ? C61 6XX 202 A 1 HETATM 32 C C62 6XX . . . C 3 -22.671 -7.707 7.113 1 31.86 ? C62 6XX 202 A 1 HETATM 33 C C64 6XX . . . C 3 -21.936 -8.687 6.54 1 32.44 ? C64 6XX 202 A 1 HETATM 34 C C65 6XX . . . C 3 -21.002 -9.535 7.363 1 35.5 ? C65 6XX 202 A 1 HETATM 35 C C69 6XX . . . C 3 -22.012 -8.911 5.096 1 30.72 ? C69 6XX 202 A 1 HETATM 36 O O70 6XX . . . C 3 -21.389 -9.783 4.49 1 28.34 ? O70 6XX 202 A 1 HETATM 37 N N71 6XX . . . C 3 -22.879 -8.107 4.423 1 31.21 ? N71 6XX 202 A 1 HETATM 38 C C73 6XX . . . C 3 -23.656 -7.099 4.98 1 32.29 ? C73 6XX 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #