data_5LJ7 # _model_server_result.job_id sOm5zZN04AnoxUVl8HItMw _model_server_result.datetime_utc '2024-12-04 02:45:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 5LJ7 # _exptl.entry_id 5LJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.54 _cell.angle_gamma 90 _cell.entry_id 5LJ7 _cell.length_a 112.328 _cell.length_b 82.61 _cell.length_c 125.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 67 A SER 47 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc2 A OE1 GLN 112 A GLN 92 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc3 C O2G ATP . A ATP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc4 C O2B ATP . A ATP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 D MG MG . A MG 702 1_555 G O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc6 D MG MG . A MG 702 1_555 G O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc7 B OG SER 67 B SER 47 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc8 B OE1 GLN 112 B GLN 92 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc9 E O1G ATP . B ATP 701 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc10 E O1B ATP . B ATP 701 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc11 F MG MG . B MG 702 1_555 H O HOH . B HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc12 F MG MG . B MG 702 1_555 H O HOH . B HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5LJ7 _atom_sites.fract_transf_matrix[1][1] 0.008902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000551 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 701 1 ATP ATP . D 3 MG A 1 702 1 MG MG . E 2 ATP B 1 701 1 ATP ATP . F 3 MG B 1 702 1 MG MG . G 4 HOH A 1 801 4 HOH HOH . G 4 HOH A 2 802 3 HOH HOH . H 4 HOH B 1 801 2 HOH HOH . H 4 HOH B 2 802 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 2 13.124 53.054 58.943 1 54.66 ? PG ATP 701 B 1 HETATM 2 O O1G ATP . . . E 2 13.595 51.959 58.021 1 55.81 ? O1G ATP 701 B 1 HETATM 3 O O2G ATP . . . E 2 11.626 53.07 59.14 1 47.23 ? O2G ATP 701 B 1 HETATM 4 O O3G ATP . . . E 2 13.732 54.407 58.664 1 39.34 ? O3G ATP 701 B 1 HETATM 5 P PB ATP . . . E 2 14.371 51.256 60.782 1 50.87 ? PB ATP 701 B 1 HETATM 6 O O1B ATP . . . E 2 14.307 50.294 59.621 1 54.82 ? O1B ATP 701 B 1 HETATM 7 O O2B ATP . . . E 2 13.8 50.849 62.117 1 55.67 ? O2B ATP 701 B 1 HETATM 8 O O3B ATP . . . E 2 13.719 52.681 60.397 1 60.91 ? O3B ATP 701 B 1 HETATM 9 P PA ATP . . . E 2 17.064 50.525 61.002 1 65.71 ? PA ATP 701 B 1 HETATM 10 O O1A ATP . . . E 2 17.453 50.304 59.561 1 67.8 ? O1A ATP 701 B 1 HETATM 11 O O2A ATP . . . E 2 16.62 49.37 61.866 1 52.46 ? O2A ATP 701 B 1 HETATM 12 O O3A ATP . . . E 2 15.907 51.642 61.051 1 63.72 ? O3A ATP 701 B 1 HETATM 13 O O5' ATP . . . E 2 18.258 51.306 61.743 1 58.67 ? O5' ATP 701 B 1 HETATM 14 C C5' ATP . . . E 2 18.635 50.946 63.066 1 57.36 ? C5' ATP 701 B 1 HETATM 15 C C4' ATP . . . E 2 19.613 51.955 63.654 1 65.53 ? C4' ATP 701 B 1 HETATM 16 O O4' ATP . . . E 2 20.949 51.456 63.541 1 64.79 ? O4' ATP 701 B 1 HETATM 17 C C3' ATP . . . E 2 19.583 53.331 63.009 1 68.07 ? C3' ATP 701 B 1 HETATM 18 O O3' ATP . . . E 2 19.411 54.283 64.059 1 70.71 ? O3' ATP 701 B 1 HETATM 19 C C2' ATP . . . E 2 20.928 53.487 62.331 1 67.79 ? C2' ATP 701 B 1 HETATM 20 O O2' ATP . . . E 2 21.437 54.809 62.505 1 75.98 ? O2' ATP 701 B 1 HETATM 21 C C1' ATP . . . E 2 21.817 52.459 63.009 1 71.94 ? C1' ATP 701 B 1 HETATM 22 N N9 ATP . . . E 2 22.769 51.825 62.069 1 72.51 ? N9 ATP 701 B 1 HETATM 23 C C8 ATP . . . E 2 22.432 50.994 61.064 1 74.84 ? C8 ATP 701 B 1 HETATM 24 N N7 ATP . . . E 2 23.539 50.578 60.4 1 80.63 ? N7 ATP 701 B 1 HETATM 25 C C5 ATP . . . E 2 24.607 51.146 60.987 1 76.01 ? C5 ATP 701 B 1 HETATM 26 C C6 ATP . . . E 2 26.071 51.128 60.779 1 76.55 ? C6 ATP 701 B 1 HETATM 27 N N6 ATP . . . E 2 26.621 50.395 59.78 1 91.34 ? N6 ATP 701 B 1 HETATM 28 N N1 ATP . . . E 2 26.832 51.866 61.62 1 83.43 ? N1 ATP 701 B 1 HETATM 29 C C2 ATP . . . E 2 26.299 52.599 62.617 1 83.1 ? C2 ATP 701 B 1 HETATM 30 N N3 ATP . . . E 2 24.975 52.659 62.857 1 65.89 ? N3 ATP 701 B 1 HETATM 31 C C4 ATP . . . E 2 24.096 51.969 62.09 1 76.04 ? C4 ATP 701 B 1 HETATM 32 H "H5'1" ATP . . . E 2 17.745 50.893 63.696 1 68.83 ? "H5'1" ATP 701 B 1 HETATM 33 H "H5'2" ATP . . . E 2 19.097 49.956 63.055 1 68.83 ? "H5'2" ATP 701 B 1 HETATM 34 H H4' ATP . . . E 2 19.368 52.078 64.718 1 78.64 ? H4' ATP 701 B 1 HETATM 35 H H3' ATP . . . E 2 18.771 53.389 62.271 1 81.68 ? H3' ATP 701 B 1 HETATM 36 H HO3' ATP . . . E 2 19.386 55.174 63.685 1 84.85 ? HO3' ATP 701 B 1 HETATM 37 H H2' ATP . . . E 2 20.832 53.243 61.264 1 81.35 ? H2' ATP 701 B 1 HETATM 38 H HO2' ATP . . . E 2 20.83 55.444 62.099 1 91.18 ? HO2' ATP 701 B 1 HETATM 39 H H1' ATP . . . E 2 22.367 52.949 63.825 1 86.33 ? H1' ATP 701 B 1 HETATM 40 H H8 ATP . . . E 2 21.419 50.7 60.82 1 89.81 ? H8 ATP 701 B 1 HETATM 41 H HN61 ATP . . . E 2 27.622 50.391 59.648 1 109.61 ? HN61 ATP 701 B 1 HETATM 42 H HN62 ATP . . . E 2 26.029 49.854 59.166 1 109.61 ? HN62 ATP 701 B 1 HETATM 43 H H2 ATP . . . E 2 26.965 53.167 63.254 1 99.72 ? H2 ATP 701 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #