data_5LJB # _model_server_result.job_id yOgrPrOdAKEHTsgR7mhcTA _model_server_result.datetime_utc '2024-11-23 14:27:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ljb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5LJB # _exptl.entry_id 5LJB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LJB _cell.length_a 34.12 _cell.length_b 49.142 _cell.length_c 75.801 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LJB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H30 O' _chem_comp.formula_weight 286.452 _chem_comp.id RTL _chem_comp.mon_nstd_flag . _chem_comp.name RETINOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RTL sing 277 n n C1 C6 RTL sing 278 n n C1 C16 RTL sing 279 n n C1 C17 RTL sing 280 n n C2 C3 RTL sing 281 n n C2 H21 RTL sing 282 n n C2 H22 RTL sing 283 n n C3 C4 RTL sing 284 n n C3 H31 RTL sing 285 n n C3 H32 RTL sing 286 n n C4 C5 RTL sing 287 n n C4 H41 RTL sing 288 n n C4 H42 RTL sing 289 n n C5 C6 RTL doub 290 n n C5 C18 RTL sing 291 n n C6 C7 RTL sing 292 n n C7 C8 RTL doub 293 e n C7 H7 RTL sing 294 n n C8 C9 RTL sing 295 n n C8 H8 RTL sing 296 n n C9 C10 RTL doub 297 e n C9 C19 RTL sing 298 n n C10 C11 RTL sing 299 n n C10 H10 RTL sing 300 n n C11 C12 RTL doub 301 e n C11 H11 RTL sing 302 n n C12 C13 RTL sing 303 n n C12 H12 RTL sing 304 n n C13 C14 RTL doub 305 e n C13 C20 RTL sing 306 n n C14 C15 RTL sing 307 n n C14 H14 RTL sing 308 n n C15 O1 RTL sing 309 n n C15 H151 RTL sing 310 n n C15 H152 RTL sing 311 n n O1 HO1 RTL sing 312 n n C16 H161 RTL sing 313 n n C16 H162 RTL sing 314 n n C16 H163 RTL sing 315 n n C17 H171 RTL sing 316 n n C17 H172 RTL sing 317 n n C17 H173 RTL sing 318 n n C18 H181 RTL sing 319 n n C18 H182 RTL sing 320 n n C18 H183 RTL sing 321 n n C19 H191 RTL sing 322 n n C19 H192 RTL sing 323 n n C19 H193 RTL sing 324 n n C20 H201 RTL sing 325 n n C20 H202 RTL sing 326 n n C20 H203 RTL sing 327 n n # _atom_sites.entry_id 5LJB _atom_sites.fract_transf_matrix[1][1] 0.029308 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RTL A 1 201 1 RTL RTL . C 3 HOH A 1 301 137 HOH HOH . C 3 HOH A 2 302 126 HOH HOH . C 3 HOH A 3 303 164 HOH HOH . C 3 HOH A 4 304 158 HOH HOH . C 3 HOH A 5 305 162 HOH HOH . C 3 HOH A 6 306 64 HOH HOH . C 3 HOH A 7 307 160 HOH HOH . C 3 HOH A 8 308 139 HOH HOH . C 3 HOH A 9 309 134 HOH HOH . C 3 HOH A 10 310 81 HOH HOH . C 3 HOH A 11 311 75 HOH HOH . C 3 HOH A 12 312 125 HOH HOH . C 3 HOH A 13 313 22 HOH HOH . C 3 HOH A 14 314 161 HOH HOH . C 3 HOH A 15 315 98 HOH HOH . C 3 HOH A 16 316 174 HOH HOH . C 3 HOH A 17 317 70 HOH HOH . C 3 HOH A 18 318 76 HOH HOH . C 3 HOH A 19 319 80 HOH HOH . C 3 HOH A 20 320 96 HOH HOH . C 3 HOH A 21 321 122 HOH HOH . C 3 HOH A 22 322 145 HOH HOH . C 3 HOH A 23 323 146 HOH HOH . C 3 HOH A 24 324 33 HOH HOH . C 3 HOH A 25 325 95 HOH HOH . C 3 HOH A 26 326 109 HOH HOH . C 3 HOH A 27 327 86 HOH HOH . C 3 HOH A 28 328 59 HOH HOH . C 3 HOH A 29 329 72 HOH HOH . C 3 HOH A 30 330 11 HOH HOH . C 3 HOH A 31 331 25 HOH HOH . C 3 HOH A 32 332 34 HOH HOH . C 3 HOH A 33 333 24 HOH HOH . C 3 HOH A 34 334 5 HOH HOH . C 3 HOH A 35 335 128 HOH HOH . C 3 HOH A 36 336 32 HOH HOH . C 3 HOH A 37 337 41 HOH HOH . C 3 HOH A 38 338 82 HOH HOH . C 3 HOH A 39 339 8 HOH HOH . C 3 HOH A 40 340 91 HOH HOH . C 3 HOH A 41 341 173 HOH HOH . C 3 HOH A 42 342 170 HOH HOH . C 3 HOH A 43 343 26 HOH HOH . C 3 HOH A 44 344 19 HOH HOH . C 3 HOH A 45 345 29 HOH HOH . C 3 HOH A 46 346 35 HOH HOH . C 3 HOH A 47 347 88 HOH HOH . C 3 HOH A 48 348 157 HOH HOH . C 3 HOH A 49 349 113 HOH HOH . C 3 HOH A 50 350 10 HOH HOH . C 3 HOH A 51 351 74 HOH HOH . C 3 HOH A 52 352 61 HOH HOH . C 3 HOH A 53 353 138 HOH HOH . C 3 HOH A 54 354 156 HOH HOH . C 3 HOH A 55 355 3 HOH HOH . C 3 HOH A 56 356 77 HOH HOH . C 3 HOH A 57 357 167 HOH HOH . C 3 HOH A 58 358 15 HOH HOH . C 3 HOH A 59 359 14 HOH HOH . C 3 HOH A 60 360 4 HOH HOH . C 3 HOH A 61 361 121 HOH HOH . C 3 HOH A 62 362 55 HOH HOH . C 3 HOH A 63 363 102 HOH HOH . C 3 HOH A 64 364 94 HOH HOH . C 3 HOH A 65 365 144 HOH HOH . C 3 HOH A 66 366 62 HOH HOH . C 3 HOH A 67 367 38 HOH HOH . C 3 HOH A 68 368 6 HOH HOH . C 3 HOH A 69 369 18 HOH HOH . C 3 HOH A 70 370 120 HOH HOH . C 3 HOH A 71 371 46 HOH HOH . C 3 HOH A 72 372 16 HOH HOH . C 3 HOH A 73 373 130 HOH HOH . C 3 HOH A 74 374 78 HOH HOH . C 3 HOH A 75 375 51 HOH HOH . C 3 HOH A 76 376 36 HOH HOH . C 3 HOH A 77 377 45 HOH HOH . C 3 HOH A 78 378 30 HOH HOH . C 3 HOH A 79 379 63 HOH HOH . C 3 HOH A 80 380 118 HOH HOH . C 3 HOH A 81 381 57 HOH HOH . C 3 HOH A 82 382 119 HOH HOH . C 3 HOH A 83 383 31 HOH HOH . C 3 HOH A 84 384 7 HOH HOH . C 3 HOH A 85 385 49 HOH HOH . C 3 HOH A 86 386 114 HOH HOH . C 3 HOH A 87 387 20 HOH HOH . C 3 HOH A 88 388 69 HOH HOH . C 3 HOH A 89 389 1 HOH HOH . C 3 HOH A 90 390 71 HOH HOH . C 3 HOH A 91 391 179 HOH HOH . C 3 HOH A 92 392 28 HOH HOH . C 3 HOH A 93 393 9 HOH HOH . C 3 HOH A 94 394 13 HOH HOH . C 3 HOH A 95 395 110 HOH HOH . C 3 HOH A 96 396 17 HOH HOH . C 3 HOH A 97 397 90 HOH HOH . C 3 HOH A 98 398 23 HOH HOH . C 3 HOH A 99 399 54 HOH HOH . C 3 HOH A 100 400 50 HOH HOH . C 3 HOH A 101 401 135 HOH HOH . C 3 HOH A 102 402 48 HOH HOH . C 3 HOH A 103 403 12 HOH HOH . C 3 HOH A 104 404 42 HOH HOH . C 3 HOH A 105 405 68 HOH HOH . C 3 HOH A 106 406 40 HOH HOH . C 3 HOH A 107 407 127 HOH HOH . C 3 HOH A 108 408 111 HOH HOH . C 3 HOH A 109 409 44 HOH HOH . C 3 HOH A 110 410 116 HOH HOH . C 3 HOH A 111 411 84 HOH HOH . C 3 HOH A 112 412 73 HOH HOH . C 3 HOH A 113 413 99 HOH HOH . C 3 HOH A 114 414 172 HOH HOH . C 3 HOH A 115 415 165 HOH HOH . C 3 HOH A 116 416 43 HOH HOH . C 3 HOH A 117 417 39 HOH HOH . C 3 HOH A 118 418 175 HOH HOH . C 3 HOH A 119 419 136 HOH HOH . C 3 HOH A 120 420 83 HOH HOH . C 3 HOH A 121 421 27 HOH HOH . C 3 HOH A 122 422 154 HOH HOH . C 3 HOH A 123 423 166 HOH HOH . C 3 HOH A 124 424 97 HOH HOH . C 3 HOH A 125 425 92 HOH HOH . C 3 HOH A 126 426 93 HOH HOH . C 3 HOH A 127 427 58 HOH HOH . C 3 HOH A 128 428 101 HOH HOH . C 3 HOH A 129 429 21 HOH HOH . C 3 HOH A 130 430 142 HOH HOH . C 3 HOH A 131 431 143 HOH HOH . C 3 HOH A 132 432 168 HOH HOH . C 3 HOH A 133 433 53 HOH HOH . C 3 HOH A 134 434 106 HOH HOH . C 3 HOH A 135 435 67 HOH HOH . C 3 HOH A 136 436 115 HOH HOH . C 3 HOH A 137 437 2 HOH HOH . C 3 HOH A 138 438 60 HOH HOH . C 3 HOH A 139 439 153 HOH HOH . C 3 HOH A 140 440 163 HOH HOH . C 3 HOH A 141 441 85 HOH HOH . C 3 HOH A 142 442 52 HOH HOH . C 3 HOH A 143 443 151 HOH HOH . C 3 HOH A 144 444 141 HOH HOH . C 3 HOH A 145 445 56 HOH HOH . C 3 HOH A 146 446 159 HOH HOH . C 3 HOH A 147 447 150 HOH HOH . C 3 HOH A 148 448 117 HOH HOH . C 3 HOH A 149 449 169 HOH HOH . C 3 HOH A 150 450 129 HOH HOH . C 3 HOH A 151 451 107 HOH HOH . C 3 HOH A 152 452 149 HOH HOH . C 3 HOH A 153 453 79 HOH HOH . C 3 HOH A 154 454 103 HOH HOH . C 3 HOH A 155 455 100 HOH HOH . C 3 HOH A 156 456 87 HOH HOH . C 3 HOH A 157 457 178 HOH HOH . C 3 HOH A 158 458 147 HOH HOH . C 3 HOH A 159 459 37 HOH HOH . C 3 HOH A 160 460 112 HOH HOH . C 3 HOH A 161 461 66 HOH HOH . C 3 HOH A 162 462 152 HOH HOH . C 3 HOH A 163 463 104 HOH HOH . C 3 HOH A 164 464 171 HOH HOH . C 3 HOH A 165 465 155 HOH HOH . C 3 HOH A 166 466 65 HOH HOH . C 3 HOH A 167 467 148 HOH HOH . C 3 HOH A 168 468 133 HOH HOH . C 3 HOH A 169 469 131 HOH HOH . C 3 HOH A 170 470 177 HOH HOH . C 3 HOH A 171 471 47 HOH HOH . C 3 HOH A 172 472 176 HOH HOH . C 3 HOH A 173 473 89 HOH HOH . C 3 HOH A 174 474 140 HOH HOH . C 3 HOH A 175 475 124 HOH HOH . C 3 HOH A 176 476 108 HOH HOH . C 3 HOH A 177 477 105 HOH HOH . C 3 HOH A 178 478 132 HOH HOH . C 3 HOH A 179 479 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RTL . . . B 2 2.539 5.144 -14.669 1 20.59 ? C1 RTL 201 A 1 HETATM 2 C C2 RTL . . . B 2 2.869 6.258 -15.743 1 23.29 ? C2 RTL 201 A 1 HETATM 3 C C3 RTL . . . B 2 3.204 5.649 -17.052 1 23.05 ? C3 RTL 201 A 1 HETATM 4 C C4 RTL . . . B 2 4.459 4.829 -16.687 1 29.27 ? C4 RTL 201 A 1 HETATM 5 C C5 RTL . . . B 2 4.349 3.855 -15.722 1 24.09 ? C5 RTL 201 A 1 HETATM 6 C C6 RTL . . . B 2 3.458 4.033 -14.662 1 19.83 ? C6 RTL 201 A 1 HETATM 7 C C7 RTL . . . B 2 3.436 2.97 -13.736 1 18.07 ? C7 RTL 201 A 1 HETATM 8 C C8 RTL . . . B 2 2.463 2.853 -12.646 1 19.05 ? C8 RTL 201 A 1 HETATM 9 C C9 RTL . . . B 2 2.532 1.695 -11.724 1 18.23 ? C9 RTL 201 A 1 HETATM 10 C C10 RTL . . . B 2 1.497 1.75 -10.71 1 17.8 ? C10 RTL 201 A 1 HETATM 11 C C11 RTL . . . B 2 1.379 0.718 -9.677 1 18.9 ? C11 RTL 201 A 1 HETATM 12 C C12 RTL . . . B 2 0.306 0.976 -8.765 1 22.03 ? C12 RTL 201 A 1 HETATM 13 C C13 RTL . . . B 2 0.037 0.091 -7.651 1 17.16 ? C13 RTL 201 A 1 HETATM 14 C C14 RTL . . . B 2 -1.091 0.596 -6.868 1 20.47 ? C14 RTL 201 A 1 HETATM 15 C C15 RTL . . . B 2 -1.566 -0.06 -5.667 1 24.41 ? C15 RTL 201 A 1 HETATM 16 O O1 RTL . . . B 2 -0.906 1.019 -4.874 1 19.22 ? O1 RTL 201 A 1 HETATM 17 C C16 RTL . . . B 2 1.307 4.374 -15.205 1 43.71 ? C16 RTL 201 A 1 HETATM 18 C C17 RTL . . . B 2 2.501 5.942 -13.331 1 23.25 ? C17 RTL 201 A 1 HETATM 19 C C18 RTL . . . B 2 5.376 2.887 -15.807 1 30.48 ? C18 RTL 201 A 1 HETATM 20 C C19 RTL . . . B 2 3.624 0.61 -11.771 1 20.09 ? C19 RTL 201 A 1 HETATM 21 C C20 RTL . . . B 2 0.889 -1.119 -7.323 1 19.89 ? C20 RTL 201 A 1 HETATM 22 H H21 RTL . . . B 2 3.716 6.849 -15.401 1 27.94 ? H21 RTL 201 A 1 HETATM 23 H H22 RTL . . . B 2 2.004 6.907 -15.866 1 27.94 ? H22 RTL 201 A 1 HETATM 24 H H31 RTL . . . B 2 3.432 6.419 -17.792 1 27.66 ? H31 RTL 201 A 1 HETATM 25 H H32 RTL . . . B 2 2.393 5.004 -17.398 1 27.66 ? H32 RTL 201 A 1 HETATM 26 H H41 RTL . . . B 2 5.224 5.526 -16.356 1 35.12 ? H41 RTL 201 A 1 HETATM 27 H H42 RTL . . . B 2 4.812 4.345 -17.595 1 35.12 ? H42 RTL 201 A 1 HETATM 28 H H7 RTL . . . B 2 4.162 2.167 -13.862 1 21.68 ? H7 RTL 201 A 1 HETATM 29 H H8 RTL . . . B 2 1.688 3.609 -12.518 1 22.86 ? H8 RTL 201 A 1 HETATM 30 H H10 RTL . . . B 2 0.822 2.606 -10.686 1 21.36 ? H10 RTL 201 A 1 HETATM 31 H H11 RTL . . . B 2 2.076 -0.113 -9.57 1 22.68 ? H11 RTL 201 A 1 HETATM 32 H H12 RTL . . . B 2 -0.275 1.892 -8.871 1 26.44 ? H12 RTL 201 A 1 HETATM 33 H H14 RTL . . . B 2 -1.561 1.531 -7.173 1 24.57 ? H14 RTL 201 A 1 HETATM 34 H H151 RTL . . . B 2 -1.118 -1.051 -5.531 1 29.29 ? H151 RTL 201 A 1 HETATM 35 H H152 RTL . . . B 2 -2.659 -0.059 -5.599 1 29.29 ? H152 RTL 201 A 1 HETATM 36 H HO1 RTL . . . B 2 -1.297 1.905 -5.126 1 23.06 ? HO1 RTL 201 A 1 HETATM 37 H H161 RTL . . . B 2 1.055 3.567 -14.517 1 52.45 ? H161 RTL 201 A 1 HETATM 38 H H162 RTL . . . B 2 1.538 3.957 -16.186 1 52.45 ? H162 RTL 201 A 1 HETATM 39 H H163 RTL . . . B 2 0.461 5.056 -15.291 1 52.45 ? H163 RTL 201 A 1 HETATM 40 H H171 RTL . . . B 2 2.264 5.263 -12.511 1 27.9 ? H171 RTL 201 A 1 HETATM 41 H H172 RTL . . . B 2 1.738 6.717 -13.391 1 27.9 ? H172 RTL 201 A 1 HETATM 42 H H173 RTL . . . B 2 3.473 6.4 -13.152 1 27.9 ? H173 RTL 201 A 1 HETATM 43 H H181 RTL . . . B 2 6.277 3.349 -16.212 1 36.58 ? H181 RTL 201 A 1 HETATM 44 H H182 RTL . . . B 2 5.059 2.077 -16.463 1 36.58 ? H182 RTL 201 A 1 HETATM 45 H H183 RTL . . . B 2 5.586 2.491 -14.814 1 36.58 ? H183 RTL 201 A 1 HETATM 46 H H191 RTL . . . B 2 4.55 1.044 -12.147 1 24.1 ? H191 RTL 201 A 1 HETATM 47 H H192 RTL . . . B 2 3.306 -0.197 -12.431 1 24.1 ? H192 RTL 201 A 1 HETATM 48 H H193 RTL . . . B 2 3.788 0.216 -10.768 1 24.1 ? H193 RTL 201 A 1 HETATM 49 H H201 RTL . . . B 2 1.687 -0.828 -6.639 1 23.87 ? H201 RTL 201 A 1 HETATM 50 H H202 RTL . . . B 2 1.324 -1.516 -8.241 1 23.87 ? H202 RTL 201 A 1 HETATM 51 H H203 RTL . . . B 2 0.27 -1.884 -6.855 1 23.87 ? H203 RTL 201 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 51 #