data_5LJH # _model_server_result.job_id c1DxZpKxXHNzC_xs1We-bw _model_server_result.datetime_utc '2024-11-17 09:29:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ljh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5LJH # _exptl.entry_id 5LJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LJH _cell.length_a 34.531 _cell.length_b 47.603 _cell.length_c 77.944 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 19 A GLU 18 1_555 B NA NA . A NA 201 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc2 A OE2 GLU 19 A GLU 18 1_555 B NA NA . A NA 201 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc3 A OD1 ASP 64 A ASP 63 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? metalc ? metalc4 A OD2 ASP 64 A ASP 63 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc5 B NA NA . A NA 201 1_555 C O HOH . A HOH 310 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc6 B NA NA . A NA 201 1_555 C O HOH . A HOH 404 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc7 B NA NA . A NA 201 1_555 C O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LJH _atom_sites.fract_transf_matrix[1][1] 0.028959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01283 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 201 NA NA . C 3 HOH A 1 301 301 HOH HOH . C 3 HOH A 2 302 302 HOH HOH . C 3 HOH A 3 303 303 HOH HOH . C 3 HOH A 4 304 304 HOH HOH . C 3 HOH A 5 305 305 HOH HOH . C 3 HOH A 6 306 306 HOH HOH . C 3 HOH A 7 307 307 HOH HOH . C 3 HOH A 8 308 308 HOH HOH . C 3 HOH A 9 309 309 HOH HOH . C 3 HOH A 10 310 310 HOH HOH . C 3 HOH A 11 311 311 HOH HOH . C 3 HOH A 12 312 312 HOH HOH . C 3 HOH A 13 313 313 HOH HOH . C 3 HOH A 14 314 314 HOH HOH . C 3 HOH A 15 315 315 HOH HOH . C 3 HOH A 16 316 316 HOH HOH . C 3 HOH A 17 317 317 HOH HOH . C 3 HOH A 18 318 361 HOH HOH . C 3 HOH A 19 319 318 HOH HOH . C 3 HOH A 20 320 319 HOH HOH . C 3 HOH A 21 321 320 HOH HOH . C 3 HOH A 22 322 321 HOH HOH . C 3 HOH A 23 323 322 HOH HOH . C 3 HOH A 24 324 323 HOH HOH . C 3 HOH A 25 325 324 HOH HOH . C 3 HOH A 26 326 325 HOH HOH . C 3 HOH A 27 327 326 HOH HOH . C 3 HOH A 28 328 327 HOH HOH . C 3 HOH A 29 329 328 HOH HOH . C 3 HOH A 30 330 329 HOH HOH . C 3 HOH A 31 331 330 HOH HOH . C 3 HOH A 32 332 331 HOH HOH . C 3 HOH A 33 333 332 HOH HOH . C 3 HOH A 34 334 333 HOH HOH . C 3 HOH A 35 335 334 HOH HOH . C 3 HOH A 36 336 335 HOH HOH . C 3 HOH A 37 337 336 HOH HOH . C 3 HOH A 38 338 337 HOH HOH . C 3 HOH A 39 339 338 HOH HOH . C 3 HOH A 40 340 339 HOH HOH . C 3 HOH A 41 341 340 HOH HOH . C 3 HOH A 42 342 341 HOH HOH . C 3 HOH A 43 343 342 HOH HOH . C 3 HOH A 44 344 343 HOH HOH . C 3 HOH A 45 345 344 HOH HOH . C 3 HOH A 46 346 345 HOH HOH . C 3 HOH A 47 347 346 HOH HOH . C 3 HOH A 48 348 360 HOH HOH . C 3 HOH A 49 349 347 HOH HOH . C 3 HOH A 50 350 348 HOH HOH . C 3 HOH A 51 351 350 HOH HOH . C 3 HOH A 52 352 351 HOH HOH . C 3 HOH A 53 353 352 HOH HOH . C 3 HOH A 54 354 353 HOH HOH . C 3 HOH A 55 355 354 HOH HOH . C 3 HOH A 56 356 355 HOH HOH . C 3 HOH A 57 357 349 HOH HOH . C 3 HOH A 58 358 356 HOH HOH . C 3 HOH A 59 359 357 HOH HOH . C 3 HOH A 60 360 358 HOH HOH . C 3 HOH A 61 361 359 HOH HOH . C 3 HOH A 62 362 362 HOH HOH . C 3 HOH A 63 363 363 HOH HOH . C 3 HOH A 64 364 364 HOH HOH . C 3 HOH A 65 365 365 HOH HOH . C 3 HOH A 66 366 366 HOH HOH . C 3 HOH A 67 367 367 HOH HOH . C 3 HOH A 68 368 368 HOH HOH . C 3 HOH A 69 369 369 HOH HOH . C 3 HOH A 70 370 370 HOH HOH . C 3 HOH A 71 371 371 HOH HOH . C 3 HOH A 72 372 372 HOH HOH . C 3 HOH A 73 373 373 HOH HOH . C 3 HOH A 74 374 374 HOH HOH . C 3 HOH A 75 375 375 HOH HOH . C 3 HOH A 76 376 376 HOH HOH . C 3 HOH A 77 377 377 HOH HOH . C 3 HOH A 78 378 378 HOH HOH . C 3 HOH A 79 379 379 HOH HOH . C 3 HOH A 80 380 380 HOH HOH . C 3 HOH A 81 381 381 HOH HOH . C 3 HOH A 82 382 382 HOH HOH . C 3 HOH A 83 383 383 HOH HOH . C 3 HOH A 84 384 384 HOH HOH . C 3 HOH A 85 385 385 HOH HOH . C 3 HOH A 86 386 386 HOH HOH . C 3 HOH A 87 387 387 HOH HOH . C 3 HOH A 88 388 388 HOH HOH . C 3 HOH A 89 389 389 HOH HOH . C 3 HOH A 90 390 390 HOH HOH . C 3 HOH A 91 391 391 HOH HOH . C 3 HOH A 92 392 392 HOH HOH . C 3 HOH A 93 393 393 HOH HOH . C 3 HOH A 94 394 394 HOH HOH . C 3 HOH A 95 395 395 HOH HOH . C 3 HOH A 96 396 396 HOH HOH . C 3 HOH A 97 397 397 HOH HOH . C 3 HOH A 98 398 398 HOH HOH . C 3 HOH A 99 399 399 HOH HOH . C 3 HOH A 100 400 401 HOH HOH . C 3 HOH A 101 401 402 HOH HOH . C 3 HOH A 102 402 405 HOH HOH . C 3 HOH A 103 403 403 HOH HOH . C 3 HOH A 104 404 404 HOH HOH . C 3 HOH A 105 405 406 HOH HOH . C 3 HOH A 106 406 400 HOH HOH . C 3 HOH A 107 407 407 HOH HOH . C 3 HOH A 108 408 408 HOH HOH . C 3 HOH A 109 409 409 HOH HOH . C 3 HOH A 110 410 410 HOH HOH . C 3 HOH A 111 411 411 HOH HOH . C 3 HOH A 112 412 412 HOH HOH . C 3 HOH A 113 413 413 HOH HOH . C 3 HOH A 114 414 414 HOH HOH . C 3 HOH A 115 415 415 HOH HOH . C 3 HOH A 116 416 416 HOH HOH . C 3 HOH A 117 417 417 HOH HOH . C 3 HOH A 118 418 418 HOH HOH . C 3 HOH A 119 419 419 HOH HOH . C 3 HOH A 120 420 420 HOH HOH . C 3 HOH A 121 421 421 HOH HOH . C 3 HOH A 122 422 422 HOH HOH . C 3 HOH A 123 423 423 HOH HOH . C 3 HOH A 124 424 424 HOH HOH . C 3 HOH A 125 425 425 HOH HOH . C 3 HOH A 126 426 426 HOH HOH . C 3 HOH A 127 427 427 HOH HOH . C 3 HOH A 128 428 428 HOH HOH . C 3 HOH A 129 429 429 HOH HOH . C 3 HOH A 130 430 430 HOH HOH . C 3 HOH A 131 431 432 HOH HOH . C 3 HOH A 132 432 431 HOH HOH . C 3 HOH A 133 433 433 HOH HOH . C 3 HOH A 134 434 434 HOH HOH . C 3 HOH A 135 435 435 HOH HOH . C 3 HOH A 136 436 436 HOH HOH . C 3 HOH A 137 437 437 HOH HOH . C 3 HOH A 138 438 438 HOH HOH . C 3 HOH A 139 439 439 HOH HOH . C 3 HOH A 140 440 440 HOH HOH . C 3 HOH A 141 441 441 HOH HOH . C 3 HOH A 142 442 442 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -15.905 _atom_site.Cartn_y 1.325 _atom_site.Cartn_z -10.055 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #