data_5LJP # _model_server_result.job_id XMVQwxTUmhDSPxnxFS2CQQ _model_server_result.datetime_utc '2024-10-18 14:27:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ljp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5LJP # _exptl.entry_id 5LJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LJP _cell.length_a 37.919 _cell.length_b 62.911 _cell.length_c 64.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 5LJP _atom_sites.fract_transf_matrix[1][1] 0.026372 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 201 170 FMN FMN . C 3 HOH A 1 301 121 HOH HOH . C 3 HOH A 2 302 21 HOH HOH . C 3 HOH A 3 303 90 HOH HOH . C 3 HOH A 4 304 11 HOH HOH . C 3 HOH A 5 305 65 HOH HOH . C 3 HOH A 6 306 83 HOH HOH . C 3 HOH A 7 307 58 HOH HOH . C 3 HOH A 8 308 48 HOH HOH . C 3 HOH A 9 309 50 HOH HOH . C 3 HOH A 10 310 8 HOH HOH . C 3 HOH A 11 311 38 HOH HOH . C 3 HOH A 12 312 42 HOH HOH . C 3 HOH A 13 313 53 HOH HOH . C 3 HOH A 14 314 97 HOH HOH . C 3 HOH A 15 315 82 HOH HOH . C 3 HOH A 16 316 60 HOH HOH . C 3 HOH A 17 317 88 HOH HOH . C 3 HOH A 18 318 105 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 37 HOH HOH . C 3 HOH A 21 321 114 HOH HOH . C 3 HOH A 22 322 78 HOH HOH . C 3 HOH A 23 323 87 HOH HOH . C 3 HOH A 24 324 101 HOH HOH . C 3 HOH A 25 325 2 HOH HOH . C 3 HOH A 26 326 14 HOH HOH . C 3 HOH A 27 327 55 HOH HOH . C 3 HOH A 28 328 81 HOH HOH . C 3 HOH A 29 329 73 HOH HOH . C 3 HOH A 30 330 4 HOH HOH . C 3 HOH A 31 331 72 HOH HOH . C 3 HOH A 32 332 43 HOH HOH . C 3 HOH A 33 333 91 HOH HOH . C 3 HOH A 34 334 12 HOH HOH . C 3 HOH A 35 335 79 HOH HOH . C 3 HOH A 36 336 45 HOH HOH . C 3 HOH A 37 337 107 HOH HOH . C 3 HOH A 38 338 15 HOH HOH . C 3 HOH A 39 339 10 HOH HOH . C 3 HOH A 40 340 68 HOH HOH . C 3 HOH A 41 341 74 HOH HOH . C 3 HOH A 42 342 17 HOH HOH . C 3 HOH A 43 343 69 HOH HOH . C 3 HOH A 44 344 94 HOH HOH . C 3 HOH A 45 345 64 HOH HOH . C 3 HOH A 46 346 16 HOH HOH . C 3 HOH A 47 347 29 HOH HOH . C 3 HOH A 48 348 80 HOH HOH . C 3 HOH A 49 349 52 HOH HOH . C 3 HOH A 50 350 6 HOH HOH . C 3 HOH A 51 351 35 HOH HOH . C 3 HOH A 52 352 85 HOH HOH . C 3 HOH A 53 353 24 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 7 HOH HOH . C 3 HOH A 56 356 36 HOH HOH . C 3 HOH A 57 357 109 HOH HOH . C 3 HOH A 58 358 25 HOH HOH . C 3 HOH A 59 359 5 HOH HOH . C 3 HOH A 60 360 99 HOH HOH . C 3 HOH A 61 361 1 HOH HOH . C 3 HOH A 62 362 40 HOH HOH . C 3 HOH A 63 363 113 HOH HOH . C 3 HOH A 64 364 27 HOH HOH . C 3 HOH A 65 365 33 HOH HOH . C 3 HOH A 66 366 49 HOH HOH . C 3 HOH A 67 367 31 HOH HOH . C 3 HOH A 68 368 51 HOH HOH . C 3 HOH A 69 369 67 HOH HOH . C 3 HOH A 70 370 59 HOH HOH . C 3 HOH A 71 371 57 HOH HOH . C 3 HOH A 72 372 115 HOH HOH . C 3 HOH A 73 373 9 HOH HOH . C 3 HOH A 74 374 13 HOH HOH . C 3 HOH A 75 375 26 HOH HOH . C 3 HOH A 76 376 106 HOH HOH . C 3 HOH A 77 377 3 HOH HOH . C 3 HOH A 78 378 104 HOH HOH . C 3 HOH A 79 379 23 HOH HOH . C 3 HOH A 80 380 30 HOH HOH . C 3 HOH A 81 381 84 HOH HOH . C 3 HOH A 82 382 46 HOH HOH . C 3 HOH A 83 383 18 HOH HOH . C 3 HOH A 84 384 32 HOH HOH . C 3 HOH A 85 385 102 HOH HOH . C 3 HOH A 86 386 92 HOH HOH . C 3 HOH A 87 387 96 HOH HOH . C 3 HOH A 88 388 93 HOH HOH . C 3 HOH A 89 389 108 HOH HOH . C 3 HOH A 90 390 110 HOH HOH . C 3 HOH A 91 391 56 HOH HOH . C 3 HOH A 92 392 70 HOH HOH . C 3 HOH A 93 393 111 HOH HOH . C 3 HOH A 94 394 112 HOH HOH . C 3 HOH A 95 395 100 HOH HOH . C 3 HOH A 96 396 28 HOH HOH . C 3 HOH A 97 397 77 HOH HOH . C 3 HOH A 98 398 117 HOH HOH . C 3 HOH A 99 399 39 HOH HOH . C 3 HOH A 100 400 34 HOH HOH . C 3 HOH A 101 401 20 HOH HOH . C 3 HOH A 102 402 44 HOH HOH . C 3 HOH A 103 403 41 HOH HOH . C 3 HOH A 104 404 89 HOH HOH . C 3 HOH A 105 405 103 HOH HOH . C 3 HOH A 106 406 98 HOH HOH . C 3 HOH A 107 407 63 HOH HOH . C 3 HOH A 108 408 122 HOH HOH . C 3 HOH A 109 409 22 HOH HOH . C 3 HOH A 110 410 47 HOH HOH . C 3 HOH A 111 411 71 HOH HOH . C 3 HOH A 112 412 76 HOH HOH . C 3 HOH A 113 413 116 HOH HOH . C 3 HOH A 114 414 75 HOH HOH . C 3 HOH A 115 415 120 HOH HOH . C 3 HOH A 116 416 95 HOH HOH . C 3 HOH A 117 417 66 HOH HOH . C 3 HOH A 118 418 61 HOH HOH . C 3 HOH A 119 419 62 HOH HOH . C 3 HOH A 120 420 123 HOH HOH . C 3 HOH A 121 421 119 HOH HOH . C 3 HOH A 122 422 118 HOH HOH . C 3 HOH A 123 423 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -18.324 0.559 18.046 1 8.08 ? N1 FMN 201 A 1 HETATM 2 C C2 FMN . . . B 2 -18.92 1.542 17.318 1 7.92 ? C2 FMN 201 A 1 HETATM 3 O O2 FMN . . . B 2 -18.86 1.561 16.069 1 8.55 ? O2 FMN 201 A 1 HETATM 4 N N3 FMN . . . B 2 -19.612 2.533 17.95 1 8.17 ? N3 FMN 201 A 1 HETATM 5 C C4 FMN . . . B 2 -19.741 2.627 19.301 1 8.43 ? C4 FMN 201 A 1 HETATM 6 O O4 FMN . . . B 2 -20.361 3.615 19.808 1 9.61 ? O4 FMN 201 A 1 HETATM 7 C C4A FMN . . . B 2 -19.093 1.652 20.082 1 8.48 ? C4A FMN 201 A 1 HETATM 8 N N5 FMN . . . B 2 -19.168 1.69 21.446 1 9.04 ? N5 FMN 201 A 1 HETATM 9 C C5A FMN . . . B 2 -18.567 0.671 22.17 1 8.66 ? C5A FMN 201 A 1 HETATM 10 C C6 FMN . . . B 2 -18.69 0.618 23.54 1 9.48 ? C6 FMN 201 A 1 HETATM 11 C C7 FMN . . . B 2 -18.124 -0.37 24.323 1 9.76 ? C7 FMN 201 A 1 HETATM 12 C C7M FMN . . . B 2 -18.309 -0.346 25.819 1 10.77 ? C7M FMN 201 A 1 HETATM 13 C C8 FMN . . . B 2 -17.376 -1.402 23.668 1 9.84 ? C8 FMN 201 A 1 HETATM 14 C C8M FMN . . . B 2 -16.787 -2.543 24.447 1 10.01 ? C8M FMN 201 A 1 HETATM 15 C C9 FMN . . . B 2 -17.233 -1.372 22.298 1 9.06 ? C9 FMN 201 A 1 HETATM 16 C C9A FMN . . . B 2 -17.821 -0.362 21.522 1 8.82 ? C9A FMN 201 A 1 HETATM 17 N N10 FMN . . . B 2 -17.729 -0.344 20.108 1 8.19 ? N10 FMN 201 A 1 HETATM 18 C C10 FMN . . . B 2 -18.405 0.62 19.384 1 8.67 ? C10 FMN 201 A 1 HETATM 19 C C1' FMN . . . B 2 -16.931 -1.359 19.417 1 8.52 ? C1' FMN 201 A 1 HETATM 20 C C2' FMN . . . B 2 -15.442 -1.015 19.405 1 8.12 ? C2' FMN 201 A 1 HETATM 21 O O2' FMN . . . B 2 -15.197 0.142 18.624 1 8.77 ? O2' FMN 201 A 1 HETATM 22 C C3' FMN . . . B 2 -14.712 -2.174 18.712 1 8.71 ? C3' FMN 201 A 1 HETATM 23 O O3' FMN . . . B 2 -14.681 -3.296 19.642 1 9.33 ? O3' FMN 201 A 1 HETATM 24 C C4' FMN . . . B 2 -13.311 -1.8 18.256 1 9.05 ? C4' FMN 201 A 1 HETATM 25 O O4' FMN . . . B 2 -12.76 -2.85 17.466 1 10.37 ? O4' FMN 201 A 1 HETATM 26 C C5' FMN . . . B 2 -12.396 -1.471 19.392 1 8.83 ? C5' FMN 201 A 1 HETATM 27 O O5' FMN . . . B 2 -11.142 -1.029 18.824 1 8.82 ? O5' FMN 201 A 1 HETATM 28 P P FMN . . . B 2 -9.828 -0.964 19.743 1 8.37 ? P FMN 201 A 1 HETATM 29 O O1P FMN . . . B 2 -9.509 -2.373 20.2 1 9.07 ? O1P FMN 201 A 1 HETATM 30 O O2P FMN . . . B 2 -10.076 -0.045 20.906 1 9.48 ? O2P FMN 201 A 1 HETATM 31 O O3P FMN . . . B 2 -8.772 -0.451 18.761 1 8.38 ? O3P FMN 201 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #