data_5LKU # _model_server_result.job_id 4Rcu_oTI_fVyuxN3Qa4N7g _model_server_result.datetime_utc '2024-12-01 00:24:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lku # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1705}' # _entry.id 5LKU # _exptl.entry_id 5LKU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LKU _cell.length_a 93.96 _cell.length_b 156.4 _cell.length_c 110.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LKU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 169 A CYS 1201 1_555 A SG CYS 172 A CYS 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc1 A SG CYS 131 A CYS 1163 1_555 D ZN ZN . A ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc2 A SG CYS 132 A CYS 1164 1_555 D ZN ZN . A ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc3 A SG CYS 145 A CYS 1177 1_555 B ZN ZN . A ZN 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc4 A SG CYS 151 A CYS 1183 1_555 B ZN ZN . A ZN 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc5 A SG CYS 169 A CYS 1201 1_555 B ZN ZN . A ZN 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc6 A SG CYS 172 A CYS 1204 1_555 B ZN ZN . A ZN 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc7 A SG CYS 215 A CYS 1247 1_555 C ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc8 A SG CYS 218 A CYS 1250 1_555 C ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc9 A ND1 HIS 223 A HIS 1255 1_555 D ZN ZN . A ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc10 A SG CYS 226 A CYS 1258 1_555 D ZN ZN . A ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc11 A SG CYS 240 A CYS 1272 1_555 C ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc12 A SG CYS 243 A CYS 1275 1_555 C ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc13 A NE2 HIS 283 A HIS 1315 1_555 E ZN ZN . A ZN 1704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc14 A NE2 HIS 283 A HIS 1315 1_555 E ZN ZN . A ZN 1704 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc15 A SG CYS 376 A CYS 1408 1_555 E ZN ZN . A ZN 1704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc16 A SG CYS 376 A CYS 1408 1_555 E ZN ZN . A ZN 1704 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 5LKU _atom_sites.fract_transf_matrix[1][1] 0.010643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006394 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1701 1 ZN ZN . C 2 ZN A 1 1702 2 ZN ZN . D 2 ZN A 1 1703 3 ZN ZN . E 2 ZN A 1 1704 4 ZN ZN . F 3 COA A 1 1705 1 COA COA . G 4 HOH A 1 1801 2 HOH HOH . G 4 HOH A 2 1802 10 HOH HOH . G 4 HOH A 3 1803 1 HOH HOH . G 4 HOH A 4 1804 9 HOH HOH . G 4 HOH A 5 1805 8 HOH HOH . G 4 HOH A 6 1806 12 HOH HOH . G 4 HOH A 7 1807 3 HOH HOH . G 4 HOH A 8 1808 15 HOH HOH . G 4 HOH A 9 1809 5 HOH HOH . G 4 HOH A 10 1810 16 HOH HOH . G 4 HOH A 11 1811 6 HOH HOH . G 4 HOH A 12 1812 11 HOH HOH . G 4 HOH A 13 1813 7 HOH HOH . G 4 HOH A 14 1814 14 HOH HOH . G 4 HOH A 15 1815 4 HOH HOH . G 4 HOH A 16 1816 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . F 3 -9.088 27.805 -23.856 1 52.03 ? N1A COA 1705 A 1 HETATM 2 C C2A COA . . . F 3 -8.699 26.954 -24.912 1 53.06 ? C2A COA 1705 A 1 HETATM 3 N N3A COA . . . F 3 -8.056 25.755 -24.579 1 51.01 ? N3A COA 1705 A 1 HETATM 4 C C4A COA . . . F 3 -7.829 25.476 -23.279 1 48.86 ? C4A COA 1705 A 1 HETATM 5 C C5A COA . . . F 3 -8.204 26.305 -22.308 1 48.11 ? C5A COA 1705 A 1 HETATM 6 C C6A COA . . . F 3 -8.827 27.442 -22.594 1 48.04 ? C6A COA 1705 A 1 HETATM 7 N N6A COA . . . F 3 -9.174 28.211 -21.577 1 48.09 ? N6A COA 1705 A 1 HETATM 8 N N7A COA . . . F 3 -7.838 25.776 -21.15 1 49.58 ? N7A COA 1705 A 1 HETATM 9 C C8A COA . . . F 3 -7.239 24.624 -21.394 1 48.68 ? C8A COA 1705 A 1 HETATM 10 N N9A COA . . . F 3 -7.221 24.458 -22.707 1 48.71 ? N9A COA 1705 A 1 HETATM 11 C C1B COA . . . F 3 -6.721 23.346 -23.469 1 50.75 ? C1B COA 1705 A 1 HETATM 12 C C2B COA . . . F 3 -5.345 22.901 -23.11 1 52.22 ? C2B COA 1705 A 1 HETATM 13 O O2B COA . . . F 3 -4.371 23.536 -24 1 53.25 ? O2B COA 1705 A 1 HETATM 14 C C3B COA . . . F 3 -5.481 21.392 -23.341 1 51.55 ? C3B COA 1705 A 1 HETATM 15 O O3B COA . . . F 3 -5.344 21.06 -24.755 1 53.05 ? O3B COA 1705 A 1 HETATM 16 P P3B COA . . . F 3 -4.68 19.672 -25.264 1 54.31 ? P3B COA 1705 A 1 HETATM 17 O O7A COA . . . F 3 -3.688 19.833 -26.339 1 52.53 ? O7A COA 1705 A 1 HETATM 18 O O8A COA . . . F 3 -3.926 19.062 -23.984 1 53.65 ? O8A COA 1705 A 1 HETATM 19 O O9A COA . . . F 3 -5.962 18.704 -25.634 1 54.73 ? O9A COA 1705 A 1 HETATM 20 C C4B COA . . . F 3 -6.917 21.082 -22.898 1 50.04 ? C4B COA 1705 A 1 HETATM 21 O O4B COA . . . F 3 -7.623 22.338 -22.969 1 51.52 ? O4B COA 1705 A 1 HETATM 22 C C5B COA . . . F 3 -7.002 20.464 -21.477 1 47.67 ? C5B COA 1705 A 1 HETATM 23 O O5B COA . . . F 3 -7.073 21.458 -20.43 1 42.7 ? O5B COA 1705 A 1 HETATM 24 P P1A COA . . . F 3 -6.433 21.231 -18.933 1 36.2 ? P1A COA 1705 A 1 HETATM 25 O O1A COA . . . F 3 -7.526 21.263 -17.921 1 36.71 ? O1A COA 1705 A 1 HETATM 26 O O2A COA . . . F 3 -5.318 22.361 -18.746 1 35.88 ? O2A COA 1705 A 1 HETATM 27 O O3A COA . . . F 3 -5.54 19.934 -19.006 1 33.18 ? O3A COA 1705 A 1 HETATM 28 P P2A COA . . . F 3 -4.837 19.262 -17.748 1 31.23 ? P2A COA 1705 A 1 HETATM 29 O O4A COA . . . F 3 -5.597 18.082 -17.257 1 30.26 ? O4A COA 1705 A 1 HETATM 30 O O5A COA . . . F 3 -3.377 18.854 -18.316 1 30.18 ? O5A COA 1705 A 1 HETATM 31 O O6A COA . . . F 3 -4.629 20.418 -16.674 1 30.46 ? O6A COA 1705 A 1 HETATM 32 C CBP COA . . . F 3 -4.572 21.223 -14.359 1 30.07 ? CBP COA 1705 A 1 HETATM 33 C CCP COA . . . F 3 -5.323 20.399 -15.424 1 30.07 ? CCP COA 1705 A 1 HETATM 34 C CDP COA . . . F 3 -5.594 21.835 -13.362 1 29.73 ? CDP COA 1705 A 1 HETATM 35 C CEP COA . . . F 3 -3.569 20.285 -13.642 1 31.34 ? CEP COA 1705 A 1 HETATM 36 C CAP COA . . . F 3 -3.82 22.327 -15.089 1 30.29 ? CAP COA 1705 A 1 HETATM 37 O OAP COA . . . F 3 -4.801 22.973 -15.892 1 29.86 ? OAP COA 1705 A 1 HETATM 38 C C9P COA . . . F 3 -3.177 23.364 -14.181 1 32.18 ? C9P COA 1705 A 1 HETATM 39 O O9P COA . . . F 3 -2.185 23.12 -13.489 1 30.85 ? O9P COA 1705 A 1 HETATM 40 N N8P COA . . . F 3 -3.783 24.552 -14.297 1 36.7 ? N8P COA 1705 A 1 HETATM 41 C C7P COA . . . F 3 -3.401 25.775 -13.582 1 40.05 ? C7P COA 1705 A 1 HETATM 42 C C6P COA . . . F 3 -3.746 25.632 -12.091 1 42.11 ? C6P COA 1705 A 1 HETATM 43 C C5P COA . . . F 3 -5.248 25.461 -11.812 1 42.47 ? C5P COA 1705 A 1 HETATM 44 O O5P COA . . . F 3 -6.105 25.746 -12.655 1 43.82 ? O5P COA 1705 A 1 HETATM 45 N N4P COA . . . F 3 -5.501 25.026 -10.563 1 42.22 ? N4P COA 1705 A 1 HETATM 46 C C3P COA . . . F 3 -6.831 24.8 -10.086 1 43.53 ? C3P COA 1705 A 1 HETATM 47 C C2P COA . . . F 3 -6.805 24.955 -8.602 1 45.53 ? C2P COA 1705 A 1 HETATM 48 S S1P COA . . . F 3 -8.278 24.035 -8.012 1 49.98 ? S1P COA 1705 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #