data_5LKX # _model_server_result.job_id YhMf6xbgZgMrGC0q3XIenw _model_server_result.datetime_utc '2024-11-07 22:34:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lkx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1708}' # _entry.id 5LKX # _exptl.entry_id 5LKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LKX _cell.length_a 93.81 _cell.length_b 155.26 _cell.length_c 109.79 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 169 A CYS 1201 1_555 A SG CYS 172 A CYS 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? disulf ? disulf2 A SG CYS 376 A CYS 1408 1_555 A SG CYS 376 A CYS 1408 3_554 ? B ? ? B ? ? ? ? ? ? ? 2.808 ? metalc ? metalc1 A SG CYS 131 A CYS 1163 1_555 D ZN ZN . A ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc2 A SG CYS 132 A CYS 1164 1_555 D ZN ZN . A ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc3 A SG CYS 145 A CYS 1177 1_555 B ZN ZN . A ZN 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc4 A SG CYS 151 A CYS 1183 1_555 B ZN ZN . A ZN 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc5 A SG CYS 169 A CYS 1201 1_555 B ZN ZN . A ZN 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc6 A SG CYS 172 A CYS 1204 1_555 B ZN ZN . A ZN 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc7 A SG CYS 215 A CYS 1247 1_555 C ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc8 A SG CYS 218 A CYS 1250 1_555 C ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc9 A ND1 HIS 223 A HIS 1255 1_555 D ZN ZN . A ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc10 A SG CYS 226 A CYS 1258 1_555 D ZN ZN . A ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc11 A SG CYS 240 A CYS 1272 1_555 C ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc12 A SG CYS 243 A CYS 1275 1_555 C ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc13 A NE2 HIS 283 A HIS 1315 1_555 E ZN ZN . A ZN 1704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc14 A NE2 HIS 283 A HIS 1315 1_555 E ZN ZN . A ZN 1704 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc15 A SG CYS 376 A CYS 1408 1_555 E ZN ZN . A ZN 1704 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc16 A SG CYS 376 A CYS 1408 1_555 E ZN ZN . A ZN 1704 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc17 A SG CYS 376 A CYS 1408 1_555 E ZN ZN . A ZN 1704 3_554 ? A ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc18 A SG CYS 376 A CYS 1408 1_555 E ZN ZN . A ZN 1704 3_554 ? B ? ? ? ? ? ? ? ? ? ? 2.544 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 232 n n C1 C2 GOL sing 233 n n C1 H11 GOL sing 234 n n C1 H12 GOL sing 235 n n O1 HO1 GOL sing 236 n n C2 O2 GOL sing 237 n n C2 C3 GOL sing 238 n n C2 H2 GOL sing 239 n n O2 HO2 GOL sing 240 n n C3 O3 GOL sing 241 n n C3 H31 GOL sing 242 n n C3 H32 GOL sing 243 n n O3 HO3 GOL sing 244 n n # _atom_sites.entry_id 5LKX _atom_sites.fract_transf_matrix[1][1] 0.01066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1701 1 ZN ZN . C 2 ZN A 1 1702 2 ZN ZN . D 2 ZN A 1 1703 3 ZN ZN . E 2 ZN A 1 1704 4 ZN ZN . F 3 1VU A 1 1705 1 1VU 1VU . G 4 DMS A 1 1706 1 DMS DMS . H 5 GOL A 1 1707 1 GOL GOL . I 5 GOL A 1 1708 2 GOL GOL . J 6 HOH A 1 1801 40 HOH HOH . J 6 HOH A 2 1802 36 HOH HOH . J 6 HOH A 3 1803 34 HOH HOH . J 6 HOH A 4 1804 162 HOH HOH . J 6 HOH A 5 1805 107 HOH HOH . J 6 HOH A 6 1806 26 HOH HOH . J 6 HOH A 7 1807 62 HOH HOH . J 6 HOH A 8 1808 63 HOH HOH . J 6 HOH A 9 1809 90 HOH HOH . J 6 HOH A 10 1810 138 HOH HOH . J 6 HOH A 11 1811 128 HOH HOH . J 6 HOH A 12 1812 25 HOH HOH . J 6 HOH A 13 1813 61 HOH HOH . J 6 HOH A 14 1814 70 HOH HOH . J 6 HOH A 15 1815 126 HOH HOH . J 6 HOH A 16 1816 39 HOH HOH . J 6 HOH A 17 1817 105 HOH HOH . J 6 HOH A 18 1818 71 HOH HOH . J 6 HOH A 19 1819 97 HOH HOH . J 6 HOH A 20 1820 120 HOH HOH . J 6 HOH A 21 1821 164 HOH HOH . J 6 HOH A 22 1822 44 HOH HOH . J 6 HOH A 23 1823 33 HOH HOH . J 6 HOH A 24 1824 116 HOH HOH . J 6 HOH A 25 1825 56 HOH HOH . J 6 HOH A 26 1826 123 HOH HOH . J 6 HOH A 27 1827 17 HOH HOH . J 6 HOH A 28 1828 41 HOH HOH . J 6 HOH A 29 1829 45 HOH HOH . J 6 HOH A 30 1830 96 HOH HOH . J 6 HOH A 31 1831 38 HOH HOH . J 6 HOH A 32 1832 88 HOH HOH . J 6 HOH A 33 1833 108 HOH HOH . J 6 HOH A 34 1834 109 HOH HOH . J 6 HOH A 35 1835 43 HOH HOH . J 6 HOH A 36 1836 111 HOH HOH . J 6 HOH A 37 1837 19 HOH HOH . J 6 HOH A 38 1838 8 HOH HOH . J 6 HOH A 39 1839 150 HOH HOH . J 6 HOH A 40 1840 86 HOH HOH . J 6 HOH A 41 1841 37 HOH HOH . J 6 HOH A 42 1842 72 HOH HOH . J 6 HOH A 43 1843 23 HOH HOH . J 6 HOH A 44 1844 92 HOH HOH . J 6 HOH A 45 1845 158 HOH HOH . J 6 HOH A 46 1846 127 HOH HOH . J 6 HOH A 47 1847 75 HOH HOH . J 6 HOH A 48 1848 154 HOH HOH . J 6 HOH A 49 1849 121 HOH HOH . J 6 HOH A 50 1850 113 HOH HOH . J 6 HOH A 51 1851 27 HOH HOH . J 6 HOH A 52 1852 3 HOH HOH . J 6 HOH A 53 1853 79 HOH HOH . J 6 HOH A 54 1854 7 HOH HOH . J 6 HOH A 55 1855 32 HOH HOH . J 6 HOH A 56 1856 24 HOH HOH . J 6 HOH A 57 1857 6 HOH HOH . J 6 HOH A 58 1858 148 HOH HOH . J 6 HOH A 59 1859 4 HOH HOH . J 6 HOH A 60 1860 110 HOH HOH . J 6 HOH A 61 1861 149 HOH HOH . J 6 HOH A 62 1862 137 HOH HOH . J 6 HOH A 63 1863 35 HOH HOH . J 6 HOH A 64 1864 14 HOH HOH . J 6 HOH A 65 1865 21 HOH HOH . J 6 HOH A 66 1866 73 HOH HOH . J 6 HOH A 67 1867 9 HOH HOH . J 6 HOH A 68 1868 161 HOH HOH . J 6 HOH A 69 1869 60 HOH HOH . J 6 HOH A 70 1870 31 HOH HOH . J 6 HOH A 71 1871 20 HOH HOH . J 6 HOH A 72 1872 91 HOH HOH . J 6 HOH A 73 1873 119 HOH HOH . J 6 HOH A 74 1874 167 HOH HOH . J 6 HOH A 75 1875 15 HOH HOH . J 6 HOH A 76 1876 42 HOH HOH . J 6 HOH A 77 1877 122 HOH HOH . J 6 HOH A 78 1878 98 HOH HOH . J 6 HOH A 79 1879 140 HOH HOH . J 6 HOH A 80 1880 84 HOH HOH . J 6 HOH A 81 1881 53 HOH HOH . J 6 HOH A 82 1882 168 HOH HOH . J 6 HOH A 83 1883 118 HOH HOH . J 6 HOH A 84 1884 12 HOH HOH . J 6 HOH A 85 1885 151 HOH HOH . J 6 HOH A 86 1886 2 HOH HOH . J 6 HOH A 87 1887 156 HOH HOH . J 6 HOH A 88 1888 141 HOH HOH . J 6 HOH A 89 1889 11 HOH HOH . J 6 HOH A 90 1890 74 HOH HOH . J 6 HOH A 91 1891 10 HOH HOH . J 6 HOH A 92 1892 5 HOH HOH . J 6 HOH A 93 1893 117 HOH HOH . J 6 HOH A 94 1894 159 HOH HOH . J 6 HOH A 95 1895 30 HOH HOH . J 6 HOH A 96 1896 87 HOH HOH . J 6 HOH A 97 1897 112 HOH HOH . J 6 HOH A 98 1898 16 HOH HOH . J 6 HOH A 99 1899 114 HOH HOH . J 6 HOH A 100 1900 139 HOH HOH . J 6 HOH A 101 1901 134 HOH HOH . J 6 HOH A 102 1902 133 HOH HOH . J 6 HOH A 103 1903 83 HOH HOH . J 6 HOH A 104 1904 13 HOH HOH . J 6 HOH A 105 1905 132 HOH HOH . J 6 HOH A 106 1906 163 HOH HOH . J 6 HOH A 107 1907 131 HOH HOH . J 6 HOH A 108 1908 106 HOH HOH . J 6 HOH A 109 1909 51 HOH HOH . J 6 HOH A 110 1910 18 HOH HOH . J 6 HOH A 111 1911 76 HOH HOH . J 6 HOH A 112 1912 100 HOH HOH . J 6 HOH A 113 1913 136 HOH HOH . J 6 HOH A 114 1914 1 HOH HOH . J 6 HOH A 115 1915 135 HOH HOH . J 6 HOH A 116 1916 82 HOH HOH . J 6 HOH A 117 1917 95 HOH HOH . J 6 HOH A 118 1918 89 HOH HOH . J 6 HOH A 119 1919 103 HOH HOH . J 6 HOH A 120 1920 129 HOH HOH . J 6 HOH A 121 1921 22 HOH HOH . J 6 HOH A 122 1922 165 HOH HOH . J 6 HOH A 123 1923 145 HOH HOH . J 6 HOH A 124 1924 124 HOH HOH . J 6 HOH A 125 1925 28 HOH HOH . J 6 HOH A 126 1926 65 HOH HOH . J 6 HOH A 127 1927 81 HOH HOH . J 6 HOH A 128 1928 29 HOH HOH . J 6 HOH A 129 1929 49 HOH HOH . J 6 HOH A 130 1930 57 HOH HOH . J 6 HOH A 131 1931 68 HOH HOH . J 6 HOH A 132 1932 66 HOH HOH . J 6 HOH A 133 1933 93 HOH HOH . J 6 HOH A 134 1934 155 HOH HOH . J 6 HOH A 135 1935 169 HOH HOH . J 6 HOH A 136 1936 102 HOH HOH . J 6 HOH A 137 1937 69 HOH HOH . J 6 HOH A 138 1938 54 HOH HOH . J 6 HOH A 139 1939 170 HOH HOH . J 6 HOH A 140 1940 166 HOH HOH . J 6 HOH A 141 1941 146 HOH HOH . J 6 HOH A 142 1942 85 HOH HOH . J 6 HOH A 143 1943 115 HOH HOH . J 6 HOH A 144 1944 46 HOH HOH . J 6 HOH A 145 1945 58 HOH HOH . J 6 HOH A 146 1946 171 HOH HOH . J 6 HOH A 147 1947 80 HOH HOH . J 6 HOH A 148 1948 50 HOH HOH . J 6 HOH A 149 1949 101 HOH HOH . J 6 HOH A 150 1950 78 HOH HOH . J 6 HOH A 151 1951 67 HOH HOH . J 6 HOH A 152 1952 144 HOH HOH . J 6 HOH A 153 1953 157 HOH HOH . J 6 HOH A 154 1954 104 HOH HOH . J 6 HOH A 155 1955 47 HOH HOH . J 6 HOH A 156 1956 48 HOH HOH . J 6 HOH A 157 1957 125 HOH HOH . J 6 HOH A 158 1958 52 HOH HOH . J 6 HOH A 159 1959 160 HOH HOH . J 6 HOH A 160 1960 152 HOH HOH . J 6 HOH A 161 1961 130 HOH HOH . J 6 HOH A 162 1962 77 HOH HOH . J 6 HOH A 163 1963 142 HOH HOH . J 6 HOH A 164 1964 94 HOH HOH . J 6 HOH A 165 1965 55 HOH HOH . J 6 HOH A 166 1966 64 HOH HOH . J 6 HOH A 167 1967 147 HOH HOH . J 6 HOH A 168 1968 99 HOH HOH . J 6 HOH A 169 1969 143 HOH HOH . J 6 HOH A 170 1970 59 HOH HOH . J 6 HOH A 171 1971 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 -1.787 24.732 3.285 1 48.83 ? C1 GOL 1708 A 1 HETATM 2 O O1 GOL . . . I 5 -2.483 23.525 2.966 1 45.32 ? O1 GOL 1708 A 1 HETATM 3 C C2 GOL . . . I 5 -2.678 25.757 4.006 1 53.45 ? C2 GOL 1708 A 1 HETATM 4 O O2 GOL . . . I 5 -3.5 25.176 5.025 1 57.5 ? O2 GOL 1708 A 1 HETATM 5 C C3 GOL . . . I 5 -1.818 26.779 4.723 1 54.98 ? C3 GOL 1708 A 1 HETATM 6 O O3 GOL . . . I 5 -1.027 26.1 5.703 1 56.39 ? O3 GOL 1708 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #