data_5LLD # _model_server_result.job_id l8MLYLPu86wmo7lE83MsGQ _model_server_result.datetime_utc '2024-10-20 00:45:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lld # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5LLD # _exptl.entry_id 5LLD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LLD _cell.length_a 151.7 _cell.length_b 151.7 _cell.length_c 96.5 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LLD _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 A,B,C,D,E,F 1 3 A,B,C,D,E,F 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 75.85 131.376054 0 3 'crystal symmetry operation' 7_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 96.5 4 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+1 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 75.85 131.376054 96.5 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 79 1_555 C FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc2 A OE1 GLU 81 A GLU 81 1_555 C FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc3 A OD2 ASP 83 A ASP 83 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc4 A NE2 HIS 84 A HIS 84 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 A NE2 HIS 147 A HIS 147 1_555 C FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc6 A OD1 ASP 166 A ASP 166 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc7 A OD2 ASP 166 A ASP 166 1_555 C FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc8 A NE2 HIS 227 A HIS 227 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc9 B FE FE . A FE 501 1_555 D O1 OXY . A OXY 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LLD _atom_sites.fract_transf_matrix[1][1] 0.006592 _atom_sites.fract_transf_matrix[1][2] 0.003806 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010363 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 501 480 FE FE . C 2 FE A 1 502 481 FE FE . D 3 OXY A 1 503 482 OXY OXY . E 4 FMN A 1 504 483 FMN FMN . F 5 HOH A 1 601 61 HOH HOH . F 5 HOH A 2 602 93 HOH HOH . F 5 HOH A 3 603 18 HOH HOH . F 5 HOH A 4 604 34 HOH HOH . F 5 HOH A 5 605 2 HOH HOH . F 5 HOH A 6 606 23 HOH HOH . F 5 HOH A 7 607 6 HOH HOH . F 5 HOH A 8 608 77 HOH HOH . F 5 HOH A 9 609 69 HOH HOH . F 5 HOH A 10 610 68 HOH HOH . F 5 HOH A 11 611 4 HOH HOH . F 5 HOH A 12 612 113 HOH HOH . F 5 HOH A 13 613 40 HOH HOH . F 5 HOH A 14 614 92 HOH HOH . F 5 HOH A 15 615 59 HOH HOH . F 5 HOH A 16 616 128 HOH HOH . F 5 HOH A 17 617 26 HOH HOH . F 5 HOH A 18 618 36 HOH HOH . F 5 HOH A 19 619 62 HOH HOH . F 5 HOH A 20 620 64 HOH HOH . F 5 HOH A 21 621 63 HOH HOH . F 5 HOH A 22 622 37 HOH HOH . F 5 HOH A 23 623 16 HOH HOH . F 5 HOH A 24 624 5 HOH HOH . F 5 HOH A 25 625 60 HOH HOH . F 5 HOH A 26 626 57 HOH HOH . F 5 HOH A 27 627 78 HOH HOH . F 5 HOH A 28 628 94 HOH HOH . F 5 HOH A 29 629 91 HOH HOH . F 5 HOH A 30 630 72 HOH HOH . F 5 HOH A 31 631 35 HOH HOH . F 5 HOH A 32 632 81 HOH HOH . F 5 HOH A 33 633 24 HOH HOH . F 5 HOH A 34 634 17 HOH HOH . F 5 HOH A 35 635 28 HOH HOH . F 5 HOH A 36 636 70 HOH HOH . F 5 HOH A 37 637 14 HOH HOH . F 5 HOH A 38 638 3 HOH HOH . F 5 HOH A 39 639 10 HOH HOH . F 5 HOH A 40 640 9 HOH HOH . F 5 HOH A 41 641 43 HOH HOH . F 5 HOH A 42 642 12 HOH HOH . F 5 HOH A 43 643 22 HOH HOH . F 5 HOH A 44 644 51 HOH HOH . F 5 HOH A 45 645 84 HOH HOH . F 5 HOH A 46 646 47 HOH HOH . F 5 HOH A 47 647 21 HOH HOH . F 5 HOH A 48 648 33 HOH HOH . F 5 HOH A 49 649 20 HOH HOH . F 5 HOH A 50 650 30 HOH HOH . F 5 HOH A 51 651 25 HOH HOH . F 5 HOH A 52 652 8 HOH HOH . F 5 HOH A 53 653 101 HOH HOH . F 5 HOH A 54 654 55 HOH HOH . F 5 HOH A 55 655 13 HOH HOH . F 5 HOH A 56 656 116 HOH HOH . F 5 HOH A 57 657 15 HOH HOH . F 5 HOH A 58 658 19 HOH HOH . F 5 HOH A 59 659 74 HOH HOH . F 5 HOH A 60 660 75 HOH HOH . F 5 HOH A 61 661 42 HOH HOH . F 5 HOH A 62 662 83 HOH HOH . F 5 HOH A 63 663 109 HOH HOH . F 5 HOH A 64 664 107 HOH HOH . F 5 HOH A 65 665 105 HOH HOH . F 5 HOH A 66 666 45 HOH HOH . F 5 HOH A 67 667 88 HOH HOH . F 5 HOH A 68 668 1 HOH HOH . F 5 HOH A 69 669 97 HOH HOH . F 5 HOH A 70 670 79 HOH HOH . F 5 HOH A 71 671 114 HOH HOH . F 5 HOH A 72 672 124 HOH HOH . F 5 HOH A 73 673 95 HOH HOH . F 5 HOH A 74 674 50 HOH HOH . F 5 HOH A 75 675 90 HOH HOH . F 5 HOH A 76 676 85 HOH HOH . F 5 HOH A 77 677 52 HOH HOH . F 5 HOH A 78 678 39 HOH HOH . F 5 HOH A 79 679 121 HOH HOH . F 5 HOH A 80 680 54 HOH HOH . F 5 HOH A 81 681 7 HOH HOH . F 5 HOH A 82 682 96 HOH HOH . F 5 HOH A 83 683 102 HOH HOH . F 5 HOH A 84 684 58 HOH HOH . F 5 HOH A 85 685 29 HOH HOH . F 5 HOH A 86 686 100 HOH HOH . F 5 HOH A 87 687 66 HOH HOH . F 5 HOH A 88 688 76 HOH HOH . F 5 HOH A 89 689 46 HOH HOH . F 5 HOH A 90 690 104 HOH HOH . F 5 HOH A 91 691 82 HOH HOH . F 5 HOH A 92 692 89 HOH HOH . F 5 HOH A 93 693 117 HOH HOH . F 5 HOH A 94 694 48 HOH HOH . F 5 HOH A 95 695 11 HOH HOH . F 5 HOH A 96 696 99 HOH HOH . F 5 HOH A 97 697 122 HOH HOH . F 5 HOH A 98 698 71 HOH HOH . F 5 HOH A 99 699 31 HOH HOH . F 5 HOH A 100 700 44 HOH HOH . F 5 HOH A 101 701 123 HOH HOH . F 5 HOH A 102 702 65 HOH HOH . F 5 HOH A 103 703 120 HOH HOH . F 5 HOH A 104 704 49 HOH HOH . F 5 HOH A 105 705 111 HOH HOH . F 5 HOH A 106 706 86 HOH HOH . F 5 HOH A 107 707 73 HOH HOH . F 5 HOH A 108 708 110 HOH HOH . F 5 HOH A 109 709 119 HOH HOH . F 5 HOH A 110 710 126 HOH HOH . F 5 HOH A 111 711 118 HOH HOH . F 5 HOH A 112 712 67 HOH HOH . F 5 HOH A 113 713 32 HOH HOH . F 5 HOH A 114 714 87 HOH HOH . F 5 HOH A 115 715 106 HOH HOH . F 5 HOH A 116 716 38 HOH HOH . F 5 HOH A 117 717 115 HOH HOH . F 5 HOH A 118 718 108 HOH HOH . F 5 HOH A 119 719 127 HOH HOH . F 5 HOH A 120 720 56 HOH HOH . F 5 HOH A 121 721 98 HOH HOH . F 5 HOH A 122 722 125 HOH HOH . F 5 HOH A 123 723 41 HOH HOH . F 5 HOH A 124 724 80 HOH HOH . F 5 HOH A 125 725 53 HOH HOH . F 5 HOH A 126 726 27 HOH HOH . F 5 HOH A 127 727 103 HOH HOH . F 5 HOH A 128 728 112 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.511 _atom_site.Cartn_y 60.821 _atom_site.Cartn_z 29.198 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #